BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19150.1
Length=1043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472139 jgi|Araly1|472139|fgenesh2_kg.1__2093__AT1G19150.1 1491 0.0
> Ahg472139 jgi|Araly1|472139|fgenesh2_kg.1__2093__AT1G19150.1
Length=1042
Score = 1491 bits (807), Expect = 0.0
Identities = 977/1055 (93%), Gaps = 28/1055 (3%)
Strand=Plus/Plus
Query 1 ACAATCAAAGATGACACTAGCTAGACATTTTCGTTTTCATCTCCCCACGAATCAAAGATG 60
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 1 ACAATCAAAGATGACACTAGCTAGACATTTTCATTTTCATCT-CCCACGAATCAAAGATG 59
Query 61 GCTTTTGCCATTGCTTCTGCTCTCACTTCCACACTCACATTATCCACGAGCAGAGTCCAA 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 60 GCTTTTGCCATTGCTTCTGCTCTCACTTCCACACTCACATTATCTACGAGCAGAGTCCAA 119
Query 121 AATC-CTACCCAGAGAAGACCACATGTAGCGTCCACATCATCCACCGGTGGAAGATTAAT 179
|| | | ||||||||||||||||| ||||||||| ||||| |||| ||||||||| | |
Sbjct 120 AA-CGCGACCCAGAGAAGACCACAAGTAGCGTCCGCATCACCCACTGGTGGAAGA--A-T 175
Query 180 GAGAGAGCGCTTGGTGGTGGTTCGTGCCGGCAAAGAAGTTTCTAGCGTCTGTGAACCACT 239
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 176 GAGTGAGCGCTTGGTGGTGGTTCGTGCCGGCAAAGAAGTTTCTAGCATCTGTGAACCACT 235
Query 240 TCCTCCGGACCGTCCTTTATGGTTCCCTGGTAGCTCTCCACCTGAATGGCTCGATGGCAG 299
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 236 TCCTCCGGACCGTCCTTTGTGGTTCCCTGGTAGCTCTCCACCTGAATGGCTCGATGGCAG 295
Query 300 CTTACCTGGTGATTTCGGTTTCGATCCTCTCGGTTTAGGGTCTGATCCGGACACCCTCAA 359
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 296 CTTACCTGGTGATTTTGGTTTCGATCCTCTCGGTTTAGGGTCTGACCCGGACACCCTCAA 355
Query 360 ATGGTTTGCACAAGCTGAGCTTATACATAGCCGGTGGGCAATGCTGGCCGTGACCGGTAT 419
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 356 ATGGTTTGCACAAGCTGAGCTCATACATAGCCGGTGGGCAATGCTGGCCGTGACAGGTAT 415
Query 420 CATAATACCAGAATGTCTCGAGCGGTTAGGTTTCATTGAAAATTTCTCATGGTATGACGC 479
| ||||||| |||||||| ||||||||||||||||| || |||||||||||||| |||||
Sbjct 416 CCTAATACCGGAATGTCTAGAGCGGTTAGGTTTCATCGAGAATTTCTCATGGTACGACGC 475
Query 480 AGGGTCTCGTGAGTACTTCGCGGATTCCACTACGCTGTTTGTGGCTCAAATGGTTTTAAT 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 476 AGGGTCTCGTGAGTACTTCGCGGATTCCACTACGTTGTTTGTGGCTCAAATGGTTTTAAT 535
Query 540 GGGCTGGGCAGAAGGTAGAAGATGGGCTGATTTGATTAAACCGGGGTCTGTTGACATAGA 599
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 536 GGGCTGGGCAGAGGGTAGAAGATGGGCTGATTTGATTAAACCGGGGTCTGTGGACATAGA 595
Query 600 ACCAAAGTACCCGCATAAAGTAAATCCTAAACCGGATGTTGGTTACCCTGGAGGTTTGTG 659
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||| ||
Sbjct 596 ACCAAAGTACCCGCACAAAGTAAATCCTAAACCGGATGTTGGTTACCCGGGCGGTTTATG 655
Query 660 GTTCGATTTTATGATGTGGGGGAGAGGTTCTCCTGAACCGGTAATGGTTTTGAGGACTAA 719
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTTCGATTTTATGATGTGGGGTAGAGGTTCTCCTGAACCGGTAATGGTTTTGAGGACTAA 715
Query 720 AGAGATTAAGAACGGACGGCTCGCGATGCTTGCTTTCCTTGGGTTCTGTTTCCAAGCTAC 779
||||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 716 AGAGATTAAAAACGGACGGCTCGCGATGCTTGCTTTCGTTGGGTTTTGTTTCCAAGCTAA 775
Query 780 CTACACTAGCCAAGATCCAATTGAGAATCTCATGGCTCATCTGGCTGATCCTGGTCATTG 839
||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 776 CTACACTAGTCAAGATCCAATTGAAAATCTCATGGCTCATCTTGCTGATCCTGGTCATTG 835
Query 840 CAACGTCTTTTCGGCATTTACATCACATTAATGAGGATTAGCTTGGGGCGAATAT-AATA 898
||||||||| |||||||||||||||||||||||||||||||| || ||| || || |||
Sbjct 836 CAACGTCTTCTCGGCATTTACATCACATTAATGAGGATTAGCCTGCGGCAAA-ATTAAT- 893
Query 899 TTTTTTATA--TAT--T---T-ATGGATGTTGAACTTTTGTATA--GTGTCACTCGCCGT 948
||||||||| ||| | | |||||||||||||||||||||| | ||||||||||||
Sbjct 894 TTTTTTATAAATATAATAGATCATGGATGTTGAACTTTTGTATATAGCGTCACTCGCCGT 953
Query 949 TGTTACAACTTC-TGCTTACTTAATTAAC-ATGTAAAATATATTTTATA-TATATGTAGA 1005
|||||||| ||| ||||||||||||||| | |||| || || || | |||||| | |
Sbjct 954 TGTTACAA-TTCATGCTTACTTAATTAATTACGTAACATGTAAAATA-AGTATATG-A-A 1009
Query 1006 AGAAAGAAACAAGAAGAGAAAATGAGCATTATTAT 1040
|| ||||||||| |||||||||||| |||||||
Sbjct 1010 C-AA-GAAACAAGACGAGAAAATGAGCTTTATTAT 1042
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38809129506
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5