BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19160.1
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920858 jgi|Araly1|920858|scaffold_102139.1 1195 0.0
Ahg949826 jgi|Araly1|949826|scaffold_801713.1 704 0.0
> Ahg920858 jgi|Araly1|920858|scaffold_102139.1
Length=1108
Score = 1195 bits (647), Expect = 0.0
Identities = 931/1067 (87%), Gaps = 23/1067 (2%)
Strand=Plus/Plus
Query 1 ATGATTCCTGAAGACCCTTTGGTCGAAATTCTCCTAAGATTGCCTGTGAAATCAC-TAGC 59
|||||||||||||||| ||||| ||||||||||||||| || ||||||||| | | | ||
Sbjct 24 ATGATTCCTGAAGACCTTTTGGACGAAATTCTCCTAAGGTTACCTGTGAAAAC-CTTGGC 82
Query 60 GAGATTTCTATGCGTATCCAAGCGTTGCTACTCAATCATCCGCAGTCGACATTTCATCAA 119
||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 83 GAGATGTCTATGCGTATCCAAGCATTGCTACTCAATCATCCGCAGTCGACGTTTCATCAA 142
Query 120 CTTATACCAATCTCGAGCCTCTACTCGTGAGTCACGTGTCATGTTTGCTTTCCGTGATAC 179
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 143 CTTATACCAGTCTCGATCCTCTACTCGTGAGTCACGTGTCATGTTTGCTTTCCGTGATGT 202
Query 180 AAACACATTTTTTCGCTGGAATTTCTTCTCGTTATCTCAACCACCTTCTTCAGTTA-C-- 236
| |||||||| |||||||| |||||||||| ||| ||||||||||||||| ||||| |
Sbjct 203 ATACACATTTCTTCGCTGGTATTTCTTCTCCTTACCTCAACCACCTTCTTTAGTTACCAA 262
Query 237 --C-A-A---T--ATCGATAGTACTTCTTATTGTATGCCTGTTTGCGTCAATGGCTTGAT 287
| | | | ||||||||||| |||| ||||||||||||||||||| | ||||||||
Sbjct 263 TTCAACATGCTGCATCGATAGTACATCTTTTTGTATGCCTGTTTGCGTCCACGGCTTGAT 322
Query 288 ATGTGTCGAACACATGTTTCGACTGTGGATATGCAATCCTGTCACGAAAAAGATCACACT 347
||||||||||||||||||||| |||||||||||||||||||||||| |||| || ||||
Sbjct 323 ATGTGTCGAACACATGTTTCGGCTGTGGATATGCAATCCTGTCACGGGAAAGGTCGCACT 382
Query 348 TTTTCCCGATTGC-GGTCCCCGTAAACAATTCACGACATGGTATATGGGATATGATCCAA 406
|| ||| | | ||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 383 GTTGCCCCA-ACCAGGTCCCCGTGAACAATTCACGACATGGTATATGGGATATGATCCTA 441
Query 407 TCAATTATCAATACAAGGTCTTGTATTTGTCAAGAGAACATTTAATAGCTCCTTATATAG 466
||||||| || || ||||| |||| |||||||| | || |||| ||| | | |||| ||
Sbjct 442 TCAATTACCATTATAAGGTATTGTTTTTGTCAAAAAAATGTTTATTAGATGCATATAAAG 501
Query 467 TGGAAGTGTTCACATTTGGAGATGAAGGTTCGTGGAGAATGATCGAGGCCGATGAGAAT- 525
|||||||||| ||||| ||||| ||| || | |||| || |||||| | |||| ||||
Sbjct 502 TGGAAGTGTTTACATTCGGAGAAGAAAGTACATGGAAAACGATCGA-G--GATGGGAATA 558
Query 526 TTCCACTCTCCAGAAACCAGAGGAGTATGCACCCACGGGGTTCTGTATTATGGTGCTTAT 585
|| |||| |||||||||||||||| |||||| |||||||||| ||||||| |||||| |
Sbjct 559 TT-CACTTTCCAGAAACCAGAGGAATATGCATCCACGGGGTTTTGTATTACGGTGCTCAC 617
Query 586 ACGGGGGATGGAGCGAAAATTGTGAGGTTCGATGTGAGGACGGAAAAGTTTGGTAAGTTC 645
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 ACGGGGAATGGACCGAAAATTGTGAGGTTCGATGTGAGGACGGAAAAGTTTGGTAAGTTC 677
Query 646 ATTGAAATGCCGGCCGAGGCTTGTAGTATTCATGGTGTCTATTTGGGTCTCTATACCCTT 705
|||||| | ||||| ||||||||| ||||| ||||||| | ||||||| |||||||||||
Sbjct 678 ATTGAATTTCCGGCTGAGGCTTGTGGTATTTATGGTGTGTGTTTGGGTTTCTATACCCTT 737
Query 706 TTGGACTACCAAGGGAAGTTAGGTTTACTTGCTACACAAGCTACAAGCACATATGATTTA 765
||| ||||||||||||| ||| |||||||||| || || | | ||||| ||||||||||
Sbjct 738 GTGGCCTACCAAGGGAAGCTAGCTTTACTTGCTTCAAAAACCATAAGCATATATGATTTA 797
Query 766 TGGGTTTTGGAAGATGCGGAGAAACATGAGTGGTCTAAGGTTTCTATCTTCATAACTCGA 825
||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||| |
Sbjct 798 TGGGTTTTGGAAGATGCCGAGAAACATGCGTGGTCTAAGGTTTCTATCGTCATAACTCCA 857
Query 826 GAGATGTGTCCGTATGATCTTATTTGGCCAGGTGTGGTGGGTTTTGTTGCTGGTAGTGGT 885
||||||||| |||| || |||||||||||||||||| |||||||||||||||||||| |
Sbjct 858 GAGATGTGTTCGTACGAGCTTATTTGGCCAGGTGTGACGGGTTTTGTTGCTGGTAGTGAT 917
Query 886 GAGCTTATAGTTACTGCTCGTGATGAGCTTGGTCAGTTTCATATTCTCTATGTTGATCTC 945
|||||||||||||||||||||||| | || | |||||||| || ||||||||||||||
Sbjct 918 GAGCTTATAGTTACTGCTCGTGATCAATTTCATGAGTTTCATCTTGTCTATGTTGATCTC 977
Query 946 AAGAAG-AATCGTTCGAGGGAAGTTTGGTTCGAAGAAATCACACCCTCGTTTGGATCAGC 1004
|||| | || ||||||||||||||| ||||||||| ||||| | |||| ||||||||| |
Sbjct 978 AAGACGCAA-CGTTCGAGGGAAGTTCGGTTCGAAGGAATCAGATCCTCATTTGGATCATC 1036
Query 1005 TCTGGTGCTTGCTTTCACGGATTACGTTGAAAGTATTGTCTTAATGT 1051
|||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1037 GCTGGTGCTTGCTTTCACGGATTACGTTGAAAGTATTGTTTTACTGT 1083
> Ahg949826 jgi|Araly1|949826|scaffold_801713.1
Length=1090
Score = 704 bits (381), Expect = 0.0
Identities = 853/1072 (80%), Gaps = 68/1072 (6%)
Strand=Plus/Plus
Query 1 ATGATTCCTGAAGACCCTTTGGTCGAAATTCTCCTAAGATTGCCTGTGAAATCACTAGCG 60
||| || ||||||||| |||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 21 ATGTTTACTGAAGACCTTTTGGTCGAAATTCTCTTAAGATTGCCTGTGAAAACCCTAGCG 80
Query 61 AGATTTCTATGCGTATCCAAGC-GTT-GCTACTCAATCATCCGCAGTCGACATTTCATCA 118
| || |||||| || ||||||| || || |||||||||||||||||||||||||||||
Sbjct 81 ATATGTCTATGTGTGTCCAAGCTTTTGGC--CTCAATCATCCGCAGTCGACATTTCATCA 138
Query 119 ACTTATACCAATCTCGAGCCTCTACTCGTGAGTCA-CGTGTCATGTTTGCTTTCCGTGAT 177
||||||||||||||||| ||||||||| | || || | ||||||||||||||| ||||||
Sbjct 139 ACTTATACCAATCTCGATCCTCTACTCATCAG-CAACATGTCATGTTTGCTTTACGTGAT 197
Query 178 ACAAACACATTTTTTCGCTGGAATTTCTTCTCGTTATCTCAACCACCTTCTTCAGTTACC 237
| | ||| |||| ||| ||| ||||||||| | ||| ||||| ||||| ||||||
Sbjct 198 ATATTCACGTTTTCTCGTTGGCATTTCTTCTTATCATCCCAACC---TTCTTTGGTTACC 254
Query 238 AATATCGATA-G-TACTTC--T--TA-TTGTAT---GCCTGTTTGCGTCAATGGCTTGAT 287
||| ||||| | | | || | || || | | ||||| ||||||||||||||||||
Sbjct 255 AATG-CGATATGCTGCGTCGATAATACTTCTCTCACGCCTGATTGCGTCAATGGCTTGAT 313
Query 288 ATGTGTCGAACACATGTTTCGACTGTGGATATGCAATCCTGTCACGA-AAAAGATCACAC 346
|||| ||||| ||||| |||| ||||||||| |||||||| ||||| ||||| | ||
Sbjct 314 ATGTCTCGAAGACATGCATCGATTGTGGATATACAATCCTGCCACGAGAAAAGG-CGTAC 372
Query 347 TTTTTCCCGATTGCGGTCCCCGTAAACAATTCACGACATGGTATATGGGATATGATCCAA 406
|||| ||| | | || |||| ||||| || | || ||||||||||||||| ||||| |
Sbjct 373 TTTTGCCCCAATCCGCTCCCTATAAACCGTTTAGGAAATGGTATATGGGATACGATCCTA 432
Query 407 TCAATTATCAATACAAGGTCTTGTATTTGTCAAGAGAACATTTAATA-GCTCCTTATATA 465
||||||||||||| ||||| |||| ||| |||| |||| | ||| || | ||| |||| |
Sbjct 433 TCAATTATCAATATAAGGTATTGTTTTTCTCAAAAGAAAAGTTAGTATG-TCCCTATAAA 491
Query 466 GTGGAAGTGTTCACATTTGGAGATGAAGGTTCGTGGAGAATGATCGAGGCCGATGAGAAT 525
||||||||||| ||||| |||| | ||||||| |||| |||||| |||| |||||||
Sbjct 492 GTGGAAGTGTTTACATTGGGAGGTCAAGGTTCATGGAAAATGATTGAGGT---TGAGAAT 548
Query 526 T-TCCACTCTCCAGAAACCAGAGGAGTATGCACCCACGGGGTTCTGTATTATGGTGCTTA 584
|| | ||||| | ||||||||||||||||| | | |||||| ||||||| ||| || |
Sbjct 549 AATC-ATTCTCCCGCAACCAGAGGAGTATGCATCGATGGGGTTGTGTATTACGGTTCTCA 607
Query 585 TACGGGGGATGGAGC-GAAAATTGTGAGGTTCGATGTGAG-GACGGAAAAGTTTGGTAAG 642
|||| | ||||| | || | ||| ||| ||| ||||| | ||||||||||||||||||
Sbjct 608 CACGGCGCATGGA-CTGAGACTTGAGAGATTCTATGTG-GCGACGGAAAAGTTTGGTAAT 665
Query 643 TTCATTGAAATGCCGGCCGAGGCTTGTAGTATTCATGGTGTCTATTTGGGTCTCTATACC 702
||||||||||| |||| ||||||| ||| | | | | | ||| || | ||| ||||
Sbjct 666 TTCATTGAAATACCGGTCGAGGCTAGTA--A--C-T--T-T-TAT--GGTT-TCTTTACC 713
Query 703 CTTT-TGGACTACCAAGGGAAGTTAGGTTTACTTGCTACACAAGCTAC-AAGCACATATG 760
||| || ||||||||||||| ||| |||||||| |||| || || || || ||||
Sbjct 714 -TTTGTGAACTACCAAGGGAAACTAGCTTTACTTGTTACAAAAAATATTAA-CATGTATG 771
Query 761 ATTTATGGGTTTTGGAAGATGC-GGAGAAACATGAGTGGTCTAAGGTTTCTATC-TTCAT 818
|||||||||||||||||| ||| || |||||| || |||||||||||||||||| || |
Sbjct 772 ATTTATGGGTTTTGGAAGTTGCCGG-GAAACAAGAATGGTCTAAGGTTTCTATCGTTT-T 829
Query 819 AACTCGAGAGATGTGTC-CGTATGATCTTATTTGGCCAG-GTGTGGTGGGTTTTGTTGCT 876
| |||||||| ||| || ||||||||||| |||| | || || | || ||||||||||||
Sbjct 830 ACCTCGAGAGTTGT-TCTCGTATGATCTTGTTTGTCTAGAGT-TAGTTGGTTTTGTTGCT 887
Query 877 GGTAGTGGTGAGCTTATAGTTACTGCTCGTGATGAG-CTTGGTCAG-TTTCATATTCTCT 934
||||||||||||||||||||||| ||||||||| | ||| ||| ||| || || |||
Sbjct 888 GGTAGTGGTGAGCTTATAGTTACAGCTCGTGATCAATCTTA-TCATCTTT-ATCTTGTCT 945
Query 935 ATGTTGATCTCAAGAAGAATCGTTCGAGGGA-AGTTTGG-TTCGAAGAAATCACACCCTC 992
||||||||||||||| ||| ||||| | | ||||||| || | | | ||| | |||
Sbjct 946 ATGTTGATCTCAAGATGAAACGTTCAAAT-ACAGTTTGGCTTGGGGGGA-TCAGATGCTC 1003
Query 993 GTTTGGATCAGCTCTG---GTGCTTGCTTTCACGGATTACGTTGAAAGTATT 1041
| | || || || | |||||| ||||||||||||||||||||||||||
Sbjct 1004 ATATCGACCATCTTTATTAGTGCTTACTTTCACGGATTACGTTGAAAGTATT 1055
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5