BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19170.1
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472140 jgi|Araly1|472140|fgenesh2_kg.1__2094__AT1G19170.1 2760 0.0
> Ahg472140 jgi|Araly1|472140|fgenesh2_kg.1__2094__AT1G19170.1
Length=1751
Score = 2760 bits (1494), Expect = 0.0
Identities = 1668/1752 (95%), Gaps = 12/1752 (1%)
Strand=Plus/Plus
Query 10 TCACCAGCTTCTGACACAGACTT-TGCAACTCTCATGACGGATCTTTGCTTCTAATTCAC 68
||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||
Sbjct 1 TCACCAGCTTCTGACACAGACTTCT-CAACTCTCATGGCGGATCTTTGCTTCTAATTCAC 59
Query 69 TATTTCTCGGCTAGATCTGTGGCA--AA-ACCAGAACCTCAATGTTTCTAGTTCCTCGTT 125
|||||||| |||||||||| |||| || | ||||||||||||||||||| ||||||||
Sbjct 60 TATTTCTCAGCTAGATCTGAGGCACCAATATCAGAACCTCAATGTTTCTAATTCCTCGTA 119
Query 126 AATCGAATCATGGTGGAGAATTTGTTTCCTTCTCGATTTCAATTTCATCTTCAGAGACTT 185
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 120 AATCGAATCATGGTTGAGAATTTGCTTCCTTCTCGATTTCAATTTCATCTTCAGAGACTT 179
Query 186 GACCCGAAGCGTCGTCTTACTTCTCTCCTTGCTTCTCACAAAACACTCTTCACATTTCTC 245
|||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||||||
Sbjct 180 GACCCGAAGCGTCGTCTTACTTCTTTCCTTGCTTCCCACAAGACACTCTTCACATTTCTC 239
Query 246 TGGATCACTGCCTTTGGTTCCGTCTTTCTATGGCAGCGAACGGCTTACATCGAAGGCGGC 305
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 240 TGGATCACTGCCTTTGGTTCCGTCTTCCTATGGCAGCGAACGGCTTACATCGAGGGCGGC 299
Query 306 TCTGGAACTGGTCCTGTCGGAGGAAAGTTCACAATTTTCGGTAAGATCAAACCGATTCAG 365
|||||| |||| || ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 300 TCTGGAGCTGGCCCCGTCGGAGGAAAGTTCACGATTTTCGGTAAGATCAAACCGATTCAG 359
Query 366 CCAATTCCCCGATTGAGACCTGTGGTGTTTGATTTGAAGGATTTTGGAGGTGTTGGAGAT 425
||| |||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 360 CCACTTCCCCGATTGAGACCAGTTGTGTTTGATTTGAAGGATTTTGGAGGTGTCGGAGAT 419
Query 426 GGGTTTACGCTTAACACTGAAGCATTCGAGAGAGCTGTGATTTCAATCTCTAAGCTTGGG 485
|| |||||||||||||| ||||| |||||||||||||||||||||||||| ||||||| |
Sbjct 420 GGCTTTACGCTTAACACCGAAGCGTTCGAGAGAGCTGTGATTTCAATCTCGAAGCTTGAG 479
Query 486 GGAAGTAGCGGCGGAGGTCAGCTGAATGTGCCGCCTGGACGGTGGCTTACGGCGCCGTTT 545
||| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 480 AGAAATAGCGGCGGAGGACAGCTGAATGTGCCGCCTGGACGGTGGCTCACGGCGCCGTTT 539
Query 546 AATCTCACTAGCCATATGACTCTGTTTCTCGCAGAGGATTCCGAGATTCTTGGTGTTGAG 605
||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 540 AATCTCACTAGCCATATGACTCTGTTTCTTGCTGAGGATTCCGAGATTCTTGGCGTTGAG 599
Query 606 GATGAGAAGTATTGGCCTTTAATGCCACCATTGCCTTCATATGGTTACGGTAGAGAGCGT 665
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 600 GATGAGAAGTATTGGCCTTTAATGCCACCATTGCCTTCATATGGTTACGGTAGAGAGCAT 659
Query 666 CCGGGACCTCGTTATGGGAGCTTAATCCATGGTCAAAACCTCAAAGATATTGTGATAACT 725
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 660 CCGGGACCTCGTTATGGGAGCTTAATCCATGGTCAAAACCTCAAAGACATTGTGATAACG 719
Query 726 GGTCATAATGGAACAATAAACGGGCAAGGACAATCGTGGTGGAAGAAGCATCAAAGAAGA 785
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 GGTCATAATGGAACAATAAACGGGCAAGGACAATCGTGGTGGAAGAAGTATCAAAGAAGA 779
Query 786 CTTCTCAACTATACGAGAGGGCCTTTAGTTCAAATTATGTGGTCTAGTGACATAGTTATC 845
||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||
Sbjct 780 CTTCTCAACTATACGAGGGGGCCTTTAGTTCAAATAATGTGGTCGAGTGACATAGTTATC 839
Query 846 GCTAACATTACAATGCGTGACTCACCGTTCTGGACTCTGCATCCATATGACTGCAAAAAT 905
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GCTAACATAACAATGCGTGACTCACCGTTCTGGACTCTGCATCCATATGACTGCAAAAAC 899
Query 906 GTAACAATAAGGAATGTCACCATCTTGGCTCCTGTAACCGGAGCACCAAACACTGATGGA 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 GTAACAATAAGGAATGTCACCATCTTGGCTCCTGTAACCGGAGCACCAAACACTGATGGA 959
Query 966 ATTGATCCAGATTCGTGCGAGGATATGGTAATTGAGGACTGTTACATTAGCACCGGGGAT 1025
|||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 960 ATTGATCCGGATTCGTGTGAGGATATGGTAATTGAGGACTGCTACATTAGCACAGGGGAT 1019
Query 1026 GATGCGATCGCGATAAAGAGTGGATGGGATCAGTTTGGGATTGCATATGGACGACCTTCA 1085
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1020 GATGCGATCGCGATAAAAAGTGGATGGGATCAGTTTGGCATTGCATATGGACGACCTTCA 1079
Query 1086 ACAAACATTCTTATTCGTAATCTCGTTGTTCGCTCTGTTATCAGTGCTGGTGTATCAATC 1145
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ACAAACATTCTTATCCGTAATCTCGTTGTTCGCTCTGTTATCAGTGCTGGTGTATCAATC 1139
Query 1146 GGAAGCGAAATGTCTGGTGGAATATCTAATGTGACGATCGAGAACCTTCTGATCTGGAAC 1205
||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1140 GGAAGTGAAATGTCCGGTGGAATATCTAACGTGATGATCGAGAACCTTCTGATCTGGAAC 1199
Query 1206 TCACGCCGTGGAATCAGAATTAAAACGGCTCCAGGACGAGGCGGTTACATCAGAAACATA 1265
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1200 TCACGCCGTGGAATCAGAATTAAAACGGCACCAGGACGAGGCGGTTACATCAGAAACATA 1259
Query 1266 ACCTACAAAAACCTAACACTAGACAATGTTCGGGTTGGGATAGTGATCAAAACGGATTAC 1325
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1260 ACCTACAAAAACCTAACACTAGACAATGTTCGGGTTGGGATCGTGATCAAAACGGATTAC 1319
Query 1326 AACGAGCATGCAGACGATAATTATGATCGGAAAGCATACCCGATACTTTCGGGATTCAGT 1385
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 1320 AACGAGCATGCAGACGATAATTATGATCGGAAAGCATATCCGATACTCTCAGGATTCAGT 1379
Query 1386 TTCGCGGGAATCCACGGACAAGGAGTGCGAGTGCCGGTCCGGATCCATGGAAGCGAACAG 1445
|| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1380 TTTGCAGGAATCCACGGACAAGGAGTGCGAGTGCCGGTCCGAATCCATGGTAGCGAACAG 1439
Query 1446 ATTCCGGTAAGGAATGTGACGTTTCGGGACATGTCCGTTGGGTTAACGTACAAGAAGAAA 1505
|||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 1440 ATTCCGGTGAGGAATGTGACGTTTCGGGATATGTCGGTTGGGTTAACGTACAAGAAGAAA 1499
Query 1506 CATATATTCCAATGTTCGTTCGTGAAAGGACGAGTGTTCGGTTCGATATTTCCTCGACCT 1565
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 1500 CATATATTCCAATGTTCGTTCGTGAAAGGACGAGTCTTCGGTTCGATATTTCCACGACCT 1559
Query 1566 TGCGAGAATTTTGATGTTTACGACGAGGAAGGTCGTCTGGTTAAGCCTGCAGCTGAGTCC 1625
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1560 TGCGAGAATTTTGATGTTTACGACGAGGAAGGTCGTCTTGTTAAGCCTGCAGCTGAGTCC 1619
Query 1626 AATGTGGCGGACATTGACTACGACATTTGAATGTTTTTTCAGTTCATTGTCATTTGTGTA 1685
|||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1620 AATGTGACGGACATTGACTACGACATTTGAATGTTTTTTCAATTCATTGTCATTTGTGTA 1679
Query 1686 CATAAAAGTAAATTTTGGGACACAAAAATGAAAATT-ATTT-TT-----CTTTGGACCAT 1738
||||||||||||||||||||||||||||||||| || |||| || |||||||| ||
Sbjct 1680 CATAAAAGTAAATTTTGGGACACAAAAATGAAATTTTATTTGTTTTTTTCTTTGGACTAT 1739
Query 1739 TTCTCTTCGTCG 1750
||||||||||||
Sbjct 1740 TTCTCTTCGTCG 1751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66277026300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5