BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19180.1
Length=1329
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472142 jgi|Araly1|472142|fgenesh2_kg.1__2096__AT1G19180.2 804 0.0
> Ahg472142 jgi|Araly1|472142|fgenesh2_kg.1__2096__AT1G19180.2
Length=1089
Score = 804 bits (435), Expect = 0.0
Identities = 577/638 (90%), Gaps = 40/638 (6%)
Strand=Plus/Plus
Query 381 GGAAC-TTTAGGCAACTCACGTCAGCCGACAACAACCATGAGTTTATTCCCTTGTGAAGC 439
||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 454 GGAACGTTT-GGCAACTCACGTCAGCCGACAACAACGATGAGTTTATTCCCTTGTGAAGC 512
Query 440 TTCTAACATGGATTCCATGGT---------TCAAGATGTTAAACCGACGAATCTGTTTCC 490
||| ||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 513 TTCAAACATGGATTCCATGGTAGCACCAGCTCAAGATGTTAAACCGACGAATTTGTTTCC 572
Query 491 TA-GGCAACCAAGCTTTTCTTCCTCATCTTCCTCTCTTCCAAAGGAAGATGTTTTGAAAA 549
| |||||| ||| ||||||||||||||||||||| ||| ||||||||||||| ||||||
Sbjct 573 -ACGGCAACTAAGTTTTTCTTCCTCATCTTCCTCTGTTCTAAAGGAAGATGTTCTGAAAA 631
Query 550 TGACACAGACTACCAGATCTGTGAAACCAGAGTCTCAAACTGCACCATTGACTATATTCT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 632 TGACACAGACTACCAGATCTGTGAAACCAGAGTCTCAAACTGCACCATTGACTATATTCT 691
Query 610 ACGCCGGGCAAGTGATTGTATTCAATGACTTTTCTGCTGAGAAAGCCAAAGAAGTGATCA 669
||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |
Sbjct 692 ACGCCGGGCAAGTGATTGTATTCAATGACTTCTCTGCTGAAAAAGTCAAAGAAGTGATGA 751
Query 670 ACTTGGCGAGCAAAGGCACCGCTAATAGCTT-A--G----C-CA---A--G--AA-T--- 710
||||||| ||||||||||||||||||||||| | | | || | | || |
Sbjct 752 ACTTGGCTAGCAAAGGCACCGCTAATAGCTTCACCGGTTTCACATCTAATGTCAACTTAG 811
Query 711 C-AA-A--C---C-GATATCAGAAGCAACATCGCTACTATCGCAAACCAAGTTCCTCATC 762
| || | | | || |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 812 CCAAGAATCAAACCGAGATCAGAAGCAACATCGCTACTATCACAAACCAAGTTCCTCATC 871
Query 763 CAAGAAAAACCACAACACAAGAGCCAATCCAATCCTCCCCAACACCATTGACAGAACTTC 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CAAGAAAAACCACAACACAAGAGCCAATCCAATCCTCCCCAACACCATTGACAGAACTTC 931
Query 823 CTATTGCTAGAAGAGCTTCACTTCACCGGTTCTTGGAGAAGAGAAAGGACAGAGTTACGT 882
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 932 CTATTGCTAGAAGAGCTTCACTTCACCGGTTCTTGGAGAAGAGAAAGGACAGGGTTACGT 991
Query 883 CAAAGGCACCATACCAATTATGCGATCCAGCCAAAGCGTCTTCAAACCCTCAAACCACAG 942
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 992 CAAAGGCACCATACCAGTTATGCGATCCAGCCAAAGCGTCTTCAAAGCCTCAAACCGCAG 1051
Query 943 GCAACATGTCGTGGCTCGGTTTAGCAGCTGAAATATGA 980
||||||||||||||||||||| |||||||||||||||
Sbjct 1052 ACAACATGTCGTGGCTCGGTTTGGCAGCTGAAATATGA 1089
Score = 265 bits (143), Expect = 7e-70
Identities = 173/187 (93%), Gaps = 3/187 (2%)
Strand=Plus/Plus
Query 196 TTTGAAAGTTTTAATTGTTAAAGATGTCGAGTTCTATGGAATGTTCTGAGTTCGTCGGTA 255
||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 106 TTTCAAAGTTTTATTTGTTAAAGATGTCGAGTTCTATGGAATGCTCTGAGTTCGTCGCTA 165
Query 256 GCCGGAGATTTACTGGGAAGAAGCCTAGCTTCTCACAGACGTGTAGTCGATTGAGTCAGT 315
| |||||||||||||||||| || ||||||||||| ||||||||||||||||||||||
Sbjct 166 GTCGGAGATTTACTGGGAAG---CCGAGCTTCTCACAAACGTGTAGTCGATTGAGTCAGT 222
Query 316 ATCTAAAAGAGAACGGTAGCTTTGGAGATCTGAGCTTAGGAATGGCATGCAAGCCTGATG 375
| || || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 223 ACCTGAAGGAGAACGGTAGCTTTGGAGATCTGAGCTTAGGCATGGCATGCAAGCCTGATG 282
Query 376 TCAATGG 382
|||||||
Sbjct 283 TCAATGG 289
Score = 113 bits (61), Expect = 3e-24
Identities = 98/114 (86%), Gaps = 9/114 (8%)
Strand=Plus/Plus
Query 21 AACTCTGCAACCAAACCAACCAACCCCAAAGCCAAACAAAGTTTTATAGAGACCTTCCAT 80
||||||||||||||||||| || || || || || |||| |||| ||||||| |||||
Sbjct 1 AACTCTGCAACCAAACCAA--AA--CC-AA-CCCAA-AAAGCTTTAAAGAGACCCTCCAT 53
Query 81 TTCTCCCTCTCGTGACAAACGCAATTTGCAGAGAAGCAACAGCAACAACAAGAA 134
|||| || ||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 54 TTCT-CC-CTCGTGACAAACGCAATTTGCAGAGAAGCAACAACATCAATAAGAA 105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49712283768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5