BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19190.1
Length=1102
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920861 jgi|Araly1|920861|scaffold_102142.1 1157 0.0
> Ahg920861 jgi|Araly1|920861|scaffold_102142.1
Length=985
Score = 1157 bits (626), Expect = 0.0
Identities = 783/860 (91%), Gaps = 6/860 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCCGAAATCGCATTCGACTATTCTCCGAGGTTTCGTATATTCAAGAACGGTGGC 60
|||||||||||||||||||||||| |||||||||||||| | || ||||||||||| ||
Sbjct 21 ATGGATTCCGAAATCGCATTCGACAATTCTCCGAGGTTTAGGATCTTCAAGAACGGCCGC 80
Query 61 ATCGAACGCCTCGTACCCGAAACATTCGTCCCACCGTCACTAAATCCCGAAAACGGCGTC 120
|| |||||||||||||| ||||| ||| |||||||||| ||||| ||||||| |||||||
Sbjct 81 ATAGAACGCCTCGTACCGGAAACTTTCATCCCACCGTCGCTAAAACCCGAAAGCGGCGTC 140
Query 121 GTATCTAAAGATGCCGTCTATTCACCGGAGAAAAACCTCTCTCTCCGCATTTACCTCCCT 180
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 GTATCTAAAGACGCAGTCTATTCACCGGAGAAAAACCTCTCTCTCCGCATTTACCTCCCT 200
Query 181 CA-AAATTCCGTCTATGAAACCGGCGAGAAGAAAATCCCACTACTCGTCTACTTTCATGG 239
|| ||| |||||| |||| ||||||| | ||||||||||||||||||||||||||| ||
Sbjct 201 CAGAAA-TCCGTCGATGACACCGGCGCTAGGAAAATCCCACTACTCGTCTACTTTCACGG 259
Query 240 CGGAGGATTCATCATGGAAACAGCTTTCTCTCCAATTTACCACACTTTTCTCACATCGGC 299
||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 260 CGGAGCTTTTATCATGGAAACAGCTTTCTCTACAATTTACCACACTTTTCTCACATCGGC 319
Query 300 AGTTTCAGCCACCGATTGCATCGCTGTCTCAGTAGAAT-ACCGTCGTGCACCTGAGCATC 358
||||||||| ||||||||||||| |||||||||| || |||| ||||||||||||||||
Sbjct 320 TGTTTCAGCCGCCGATTGCATCGCCGTCTCAGTAG-ATCACCGGCGTGCACCTGAGCATC 378
Query 359 CGATTCCAACCTTGTACGAAGATTCATGGGACGCGATTCAATGGATCTTCACTCATATCA 418
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 379 CGATTCCAACCGCGTACGAAGATTCATGGCACGCGATTCAATGGATCTTCACTCATATCG 438
Query 419 CAAGATCTGGTCCTGAAGATTGGCTAAACAAACACGCCGATTTCAGTAAAGTCTTTCTCG 478
| |||||||||||||||| |||| ||||||||||| |||||||||||||| | ||||
Sbjct 439 CCGGATCTGGTCCTGAAGACCGGCTGAACAAACACGCTGATTTCAGTAAAGTATACCTCG 498
Query 479 CCGGAGATAGCGCCGGAGCTAACATCGCGCATCACATGGCGATTAGAGTAGACAAAGAGA 538
||||||| |||||||||||||||||||| ||||||||||||||||||| ||| |||||||
Sbjct 499 CCGGAGACAGCGCCGGAGCTAACATCGCTCATCACATGGCGATTAGAGCAGAGAAAGAGA 558
Query 539 AACTCCCCCCGGAAAATTTCAAAATATCGGGGATGATTCTGTTTCATCCGTATTTCTTGT 598
||||| | ||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 559 AACTCTCGCCGGAAAATTTCAAAATCTCGGGGATGATTTTGTTTCATCCGTATTTCTTGT 618
Query 599 CAAAAGCTTTGATTGAGGAGATGGAAGTGGAAGCGATGAGATATTACGAAAGGCTTTGGA 658
|||||||||||||||||||||||||||||| ||||||||||||||| || |||||||| |
Sbjct 619 CAAAAGCTTTGATTGAGGAGATGGAAGTGGGAGCGATGAGATATTATGAGAGGCTTTGCA 678
Query 659 GAATCGCGAGTCCTGATAGTGGAAACGGTGTGGAGGATCCGTGGATTAATGTGGTCGGGT 718
| ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 679 GGATCGCGACTCCTGGTAGTGAAAACGGTGTGGAGGATCCGTGGATTAATGTGGTCGGGT 738
Query 719 CGGATCTAACCG-GATTGGGTTGTAGGCGGGTTTTGGTGATGGTGGCGGGAAATGATGTG 777
|||||||| | | | |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 739 CGGATCTATCTGAG-TTGGGTTGCGGGCGGGTTTTGGTGATGGTGGCGGGAAATGATGTG 797
Query 778 TTGGCTAGGGGAGGTTGGAGTTACGTGGCGGAGCTGGAGAAGAGTGGATGGATAGGGAAA 837
||||| ||||||||||||||||||| || ||| ||| ||||| |||||||| ||||||||
Sbjct 798 TTGGCGAGGGGAGGTTGGAGTTACGCGGTGGATCTGAAGAAGTGTGGATGGGTAGGGAAA 857
Query 838 GTGAAAGTGATGGAGACTAA 857
||| ||||| ||||||||||
Sbjct 858 GTGGAAGTGGTGGAGACTAA 877
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41058381609
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5