BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19200.1
Length=732
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911737 jgi|Araly1|911737|Al_scaffold_0001_1991 765 0.0
Ahg926875 jgi|Araly1|926875|scaffold_202436.1 117 1e-25
> Ahg911737 jgi|Araly1|911737|Al_scaffold_0001_1991
Length=663
Score = 765 bits (414), Expect = 0.0
Identities = 579/656 (88%), Gaps = 22/656 (3%)
Strand=Plus/Plus
Query 1 ATGGTGGTTCCAGGTAA-AAACTCCACTATTTCGCCGG-ATTATTTCACGGCTAGTCAAA 58
|||||||||||||| || |||||| | |||| || ||| | ||||||||||||||| ||
Sbjct 22 ATGGTGGTTCCAGG-AATAAACTCGATTATTACGTCGGCA-AATTTCACGGCTAGTCGAA 79
Query 59 CAAGTCCTTTAGATATGATGAAATTCCCGTCGCCTGGAAGTTCGAAGAGGTACGATA-AT 117
||||||| |||||||||| || ||||| |||||||||||||||||||||||||| | |
Sbjct 80 CAAGTCCATTAGATATGA--AATTTCCC-TCGCCTGGAAGTTCGAAGAGGTACGA-AGAC 135
Query 118 GGCGGTGGAATTGGTTTAGGTATCGTCGCTGCGCTTGAGAAATCCAGCATCGGGATCAAT 177
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 136 GGCGGTGGAATTGGTTTAGGTATCGTCGCTGCGCTTGAGAAATCCGGCATCGGGATCAAT 195
Query 178 CCGGTTTGCCATACCGGTGCCGGTTCCAAA-GGATTTGACCTGGCTCGATATTC-CAAGA 235
||||||||| || ||| |||||| |||| |||| |||| || ||| || || | ||
Sbjct 196 CCGGTTTGCTATCCCGCAACCGGTT-CAAACGGATCCGACCCGGTTCGCTA-TCGTAGGA 253
Query 236 GATTCCAATTCGCGGCGGGGATTGATCTATCTGACTCTGAGGAATACACTTGCGTCACGA 295
|| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 254 GAGTCCAATTGGCGGCGGATATTGATCTATCTGACTCTGAGGAATACACTTGCGTCACGA 313
Query 296 CTCGTGATGGCCTGACCAAAGTCTATTACAAGGAAGAAGAGTTTGAATTTGGTCATAATC 355
|||||||||||| |||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 314 CTCGTGATGGCCGGACCAAAGTCTATTACAACGAAGAAGAATTTGAATTTGGTCAGAATC 373
Query 356 TATTGAACGGTGATCAGAGATGGAGAAAACCGATAGAAATCGCCGAGGAGTCACCGGCGA 415
||| || |||||||||||||| || |||| |||||||||||||||||| ||||||| ||
Sbjct 374 TATCGACCGGTGATCAGAGATTGAAAAAATGGATAGAAATCGCCGAGGAATCACCGGTGA 433
Query 416 AGGAGAGGCG-GGTATTGAGAGATTGTCCAGATTTTCTAACTTCTTGTTGCTTGTGTAAG 474
|| ||| | | |||||||||||||| |||||||||||| ||||| ||||| |||||||||
Sbjct 434 AGAAGA-GAGAGGTATTGAGAGATTCTCCAGATTTTCTGACTTCATGTTGTTTGTGTAAG 492
Query 475 AAGAAACTTCAAGGCAAAGACATTTACATGTACAAAGGAGATGAAGGATTTTGTAGTAAA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 493 AAGAAACTTCAAGGCAAAGACATTTACATGTACAAAGGAGATGAAGGATTTTGTAGTAAA 552
Query 535 GAGTGTAGATCGTTGAAGATAATGGAGGATAGTTTAAAAGAGCAACATAAATTGACAAG- 593
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||| ||
Sbjct 553 GAGTGTAGATCGTTGAAAATAATGGATGATAGTTTAAACGAGCAACATAAATTGAGAAAC 612
Query 594 TGTTGAGGTTCTAACCGGAGAAGAGATTGCCTCCCCCGGAATATTCCTT-ATATGA 648
| | | | | | |||||||||||||||||||||||||||||| || ||||||
Sbjct 613 TCTCCATGCG-T--C-GGAGAAGAGATTGCCTCCCCCGGAATATTC-TTGATATGA 663
> Ahg926875 jgi|Araly1|926875|scaffold_202436.1
Length=712
Score = 117 bits (63), Expect = 1e-25
Identities = 78/85 (92%), Gaps = 2/85 (2%)
Strand=Plus/Plus
Query 448 TTTCTAACTTCTTGTTGCTTGTGTAAGAAGAAACTTCAAGGCAAAGACATTTACATGTAC 507
||||| | ||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 471 TTTCTGAGTTCGTGTTGCTTGTGTAAGAAGAAACTTCAAGGCAAAGACATATACATGTAC 530
Query 508 AAAGGAGATGAAGG-ATTTTGTAGT 531
|||||||| || || ||||||||||
Sbjct 531 AAAGGAGA-GATGGGATTTTGTAGT 554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26952902319
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5