BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19210.1
Length=709
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472144 jgi|Araly1|472144|fgenesh2_kg.1__2098__AT1G19210.1 979 0.0
Ahg476631 jgi|Araly1|476631|fgenesh2_kg.2__1761__AT1G74930.1 248 4e-65
> Ahg472144 jgi|Araly1|472144|fgenesh2_kg.1__2098__AT1G19210.1
Length=698
Score = 979 bits (530), Expect = 0.0
Identities = 646/699 (92%), Gaps = 20/699 (3%)
Strand=Plus/Plus
Query 6 AGGG-TCGTCTTCTTCGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGAA 64
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 8 AGGGATCGTCTTCTTCGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGGA 67
Query 65 AATGGGTTTCAGAGATCAGACTTCCCAACAGCAGAGAACGTATTTGGTTGGGCTCTTACG 124
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 68 AATGGGTTTCAGAGATCAGACTACCAAACAGCAGAGAACGTATTTGGTTGGGCTCTTACG 127
Query 125 ATACTCCTGAGAAGGCGGCGCGTGCTTTCGACGCGGCTCTTTATTGTCTCCGTGGCAACA 184
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 128 ATACTCCTGAGAAGGCGGCGCGTGCTTTCGACGCGGCTCTTTATTGCCTCCGTGGCAACA 187
Query 185 ACGCAAAGTTCAATTTCCCTGATAATCCTCCGGTGATCTCCGGCGGACGTAACTTGTCGC 244
|||| |||||||||||||||||||| |||||||||||| || |||||| ||||||||||
Sbjct 188 ACGCCAAGTTCAATTTCCCTGATAACCCTCCGGTGATCAACGACGGACGAAACTTGTCGC 247
Query 245 GATCTGAGATAAGAGAAGCTGCTGCGAGGTTCGCTAATTCGGCGGAGGATGATTCAAGTG 304
|||||||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 248 GATCTGAGATCCGAGAAGCTGCTGCTAGGTTCGCTAATTCGTCGGAGGATGATTCAAGTG 307
Query 305 GCGGAG---CAGGATACGAGATACGGCAAGAATCTG-CTTCAACATCGATGGACGTTGAT 360
|||||| |||||||||||||||||||||| || | ||||||||||||||||| |||||
Sbjct 308 GCGGAGGAGCAGGATACGAGATACGGCAAGAGTC-GACTTCAACATCGATGGACATTGAT 366
Query 361 TCGGAGTTTTTGAGTATGCTTCCGACGGTTGGTTCGGGTAACTTCGCTTCGGAGTTTGGG 420
|||||||| |||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 367 TCGGAGTTCTTGACTATGCTTCCGACTGTTGGTTCGGGTAATTTCGCTTCGGAGTTTGGG 426
Query 421 TTATTCCCTGGGTTTGATGATTTCTCCGATGAATACTCCGGTGATCGTTTCAGAGAGCAG 480
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 427 TTGTTCCCTGGGTTTGATGATTTCTCCGATGAATACTCCGGCGATCGTTTCAGAGAGCAG 486
Query 481 CTTTCGCCTACACAAGATTATTATCAGCTTGGAGAAGAG-ACTTACGCCGATGGTTCCAT 539
||||| |||||||||||||||||||| ||||||||| | ||||| || |||||||||
Sbjct 487 CTTTCACCTACACAAGATTATTATCAA---GGAGAAGAGGA-TTACGACGGTGGTTCCAT 542
Query 540 GTTTCTTTGGAATTTTTGAATTCCAT-T-ATTCACAATCTGAAAATTTTGACTTGGGttt 597
|||||||||||||||||||||| ||| | |||||||||||||||||||||| ||||||||
Sbjct 543 GTTTCTTTGGAATTTTTGAATTTCATGTGATTCACAATCTGAAAATTTTGATTTGGGTTT 602
Query 598 ttta-tttttttttgt-agttcttt--acccaatttttttttGATCATTGGGATAAAGAG 653
|||| ||||||||||| | |||||| ||||||||||||| |||||||||||||| | |
Sbjct 603 TTTAATTTTTTTTTGTTA-TTCTTTTTACCCAATTTTTTTG-GATCATTGGGATAAGG-G 659
Query 654 TTATTCATTCACTAtttttttCCCACGTGTTAGATTTTT 692
|||||||||| |||||||||||||||||||||| ||||
Sbjct 660 ATATTCATTCATTATTTTTTTCCCACGTGTTAGAATTTT 698
> Ahg476631 jgi|Araly1|476631|fgenesh2_kg.2__1761__AT1G74930.1
Length=816
Score = 248 bits (134), Expect = 4e-65
Identities = 190/216 (88%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 20 CGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTTTCAGAGA 79
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 134 CGATGCAGTCAAAGTACAAAGGAGTGAGGAAGAGGAAATGGGGAAAATGGGTATCGGAGA 193
Query 80 TCAGACTTCC-CAACAGCAGAGAACGTATTTGGTTGGGCTCTTACGATACTCCTGAGAAG 138
|||||||||| || |||||||||||||| ||||| ||||||||||| ||||| ||||||
Sbjct 194 TCAGACTTCCACAT-AGCAGAGAACGTATCTGGTTAGGCTCTTACGAAACTCCAGAGAAG 252
Query 139 GCGGCGCGTGCTTTCGACGCGGCTCT-TTATTGTCTCCGTGGCA-ACAACGCAAAGTTCA 196
|||||||||||||||||||| |||| || ||||||||| ||| | || || || ||||
Sbjct 253 GCGGCGCGTGCTTTCGACGCCGCTCAATT-TTGTCTCCGCGGCGGAGAA-GCTAATTTCA 310
Query 197 ATTTCCCTGATAATCCTCCGG-TGATCTCCGGCGGA 231
||||||| |||||||| ||| | |||||||| |||
Sbjct 311 ATTTCCCAGATAATCCACCGTCT-ATCTCCGGAGGA 345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26076075228
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5