BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19230.2
Length=2878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312861 jgi|Araly1|312861|fgenesh1_pm.C_scaffold_1001641 3356 0.0
> Ahg312861 jgi|Araly1|312861|fgenesh1_pm.C_scaffold_1001641
Length=2841
Score = 3356 bits (1817), Expect = 0.0
Identities = 1959/2025 (97%), Gaps = 19/2025 (1%)
Strand=Plus/Plus
Query 783 GGCTGATAGTAACGAAGACGGGAAGATCACTAGAGAAGAAATCAAAGAACTTCTAATGCT 842
||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 834 GGCTGATAGCAACGAAGATGGGAAGATCACTAGAGAAGAAATCAAAGAACTTTTGATGCT 893
Query 843 AAGTGCATCAGCAAACAAGTTAGCAAAACTCAAGGAACAAGCTGAAGAGTACGCATCTCT 902
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 894 AAGTGCATCAGCAAACAAGTTAGCAAAACTCAAGGAACAAGCAGAAGAGTACGCATCTCT 953
Query 903 GATCATGGAAGAGCTTGATCCTGAGAATTTTGGATACATTGAGTTATGGCAACTCGAGAC 962
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 954 GATCATGGAAGAACTTGATCCAGAGAATTTTGGATACATTGAGTTATGGCAACTCGAGAC 1013
Query 963 ACTCTTACTTCAGAGAGACGCATACATGAATTACAGTAGACCACTTAGCACAACAAGCGG 1022
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1014 ACTCTTACTTCAGAGAGACGCATACATGAATTACAGTAGACCGCTTAGCACAACAAGCGC 1073
Query 1023 TGGAGTAAGTACACCAAGACGGAATCTAATAAGACCTCGTCATGTGGTTC-AAAAGTGTA 1081
|||||| ||||||||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct 1074 TGGAGTGAGTACACCAAGACGGAATCTAATCAGACCTCGTCATGTGGTTCGAAAA-TGTA 1132
Query 1082 GaaaaaaaCTTCAATGTCTGATTCTAGATAACTGGCAAAGAAGCTGGGTTCTTTTAG-TG 1140
||||||||||||| |||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 1133 GAAAAAAACTTCAGTGTCTGGTTCTAGATAACTGGCAAAGAAGCTGGGTTCTTTT-GCTG 1191
Query 1141 TGGGTCATGCTTATGGCCATCCTCTTTGTCTGGAAGTTTCTAGAGTACAGAGAAAAAGCT 1200
||| ||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||
Sbjct 1192 TGGATCATGCTTATGGCCATCCTATTCGTCTGGAAGTTTCTTGAGTACAGAGAGAAAGCT 1251
Query 1201 GCGTTTAAGGTCATGGGGTATTGTTTAACCACTGCTAAAGGAGCTGCAGAGACTCTTAAG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 GCGTTTAAGGTCATGGGGTATTGTTTAACCACTGCTAAAGGAGCTGCAGAGACTCTTAAG 1311
Query 1261 CTCAACATGGCTCTGGTTTTATTACCTGTCTGTAGAAACACATTGACTTGGCTAAGATCT 1320
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1312 CTCAATATGGCTCTGGTTTTATTACCTGTCTGCAGAAACACATTGACTTGGCTAAGATCT 1371
Query 1321 ACACGCGCTCGAGCTTGTGTTCCTTTTGATGACAACATCAATTTCCATAAGATTATTGCT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 ACACGCGCTCGAGCTTGTGTTCCTTTTGATGACAACATCAATTTCCATAAGATTATTGCT 1431
Query 1381 TGTGCCATAGCGATTGGGATACTTGTTCATGCTGGTACTCATTTGGCGTGTGATTTCCCC 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 TGTGCCATAGCGATTGGGATACTTGTTCATGCTGGTACTCATTTGGCGTGTGATTTCCCC 1491
Query 1441 CGGATTATAAACTCGAGTCCAGAACAATTTGTCTTGATCGCTTCTGCCTTCAATGGTACT 1500
|||||||||||||||||||||||| |||| | |||||| |||||||||||||||||||||
Sbjct 1492 CGGATTATAAACTCGAGTCCAGAAGAATTCGCCTTGATTGCTTCTGCCTTCAATGGTACT 1551
Query 1501 AAGCCTACATTCAAAGACCTGATGACAGGTGCAGAAGGAATCACCGGGATCTCGATGGTG 1560
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1552 AAGCCCACATTCAAAGACCTGATGACAGGTGCAGAAGGAATCACTGGGATCTCGATGGTG 1611
Query 1561 ATCTTGACAACCATTGCATTCACATTAGCATCAACTCATTTCAGGAGAAACCGTGTGAGG 1620
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 ATCTTGACAACCATCGCATTCACATTAGCATCAACTCATTTCAGGAGAAACCGTGTGAGG 1671
Query 1621 CTTCCGGCACCACTTGATCGGTTGACTGGCTTTAACGCATTCTGGTACACTCATCACCTT 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 CTTCCGGCACCACTTGATCGGTTGACTGGCTTTAACGCATTCTGGTACACTCATCACCTT 1731
Query 1681 CTAGTGGTTGTCTACATCATGCTCATTGTCCACGGGACCTTCCTGTTCTTTGCTGATAAG 1740
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1732 CTAGTGGTTGTCTACATCATGCTCATTGTCCACGGTACCTTCCTGTTCTTTGCTGATAAG 1791
Query 1741 TGGTATCAGAAAACGACTTGGATGTACATCTCGGTTCCTTTGGTGCTCTACGTGGCAGAA 1800
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1792 TGGTATCAGAAAACTACTTGGATGTACATCTCGGTTCCTTTGGTGCTCTATGTGGCAGAA 1851
Query 1801 CGAAGTCTGCGAGCTTGTAGGTCAAAGCATTACTCTGTCAAAATCCTCAAGGTTTCCATG 1860
|||||||||||||||||||||||||||||||||||||| | || | |||
Sbjct 1852 CGAAGTCTGCGAGCTTGTAGGTCAAAGCATTACTCTGT-----T--TC----T----ATG 1896
Query 1861 CTACCTGGAGAAGTACTCAGCTTAATCATGTCAAAGCCTCCTGGATTCAAGTACAAGAGC 1920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1897 CTACCTGGAGAAGTACTCAGCTTAATCATGTCAAAGCCTCCTGGATTCAAGTACAAGAGC 1956
Query 1921 GGTCAGTACATATTCTTGCAGTGTCCAACTATCTCTCGATTTGAATGGCACCCATTTTCT 1980
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1957 GGTCAATACATATTCTTGCAGTGTCCAACTATCTCTCGATTTGAATGGCACCCATTTTCT 2016
Query 1981 ATTACCTCTGCACCAGGAGATGACCAACTTAGTGTTCACATCCGAACACTCGGAGACTGG 2040
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2017 ATTACCTCTGCACCAGGAGATGACCAACTTAGTGTTCACATCCGAACACTCGGAGACTGG 2076
Query 2041 ACAGAGGAGCTACGACGAGTTCTAACTGTGGGCAAAGATCTTTCAACATGCGTGATTGGG 2100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2077 ACAGAGGAGCTACGACGAGTTCTAACTGTGGGCAAAGATCTTTCAACATGCGTGATTGGG 2136
Query 2101 CGTTCAAAATTCTCTGCCTATTGCAATATTGATATGATAAACCGACCAAAATTACTAGTA 2160
|||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2137 CGTTCAAAATTCTCTGCCTATTGCAATATTGATACAATAAACCGACCGAAATTACTAGTA 2196
Query 2161 GACGGTCCATATGGAGCTCCAGCACAGGACTACAGAAGCTATGATGTCTTGCTCCTCATT 2220
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2197 GACGGCCCATATGGAGCTCCAGCACAGGACTACAGAAGCTATGATGTCTTACTCCTCATT 2256
Query 2221 GGACTGGGAATAGGAGCTACTCCTTTCATAAGCATCCTGAAGGATCTGCTGAACAATTCA 2280
||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2257 GGATTGGGAATAGGAGCTACTCCTTTCATAAGTATCCTGAAGGATCTCCTGAACAATTCA 2316
Query 2281 AGAGACGAACAAACAGACAATGAATTCAGCAGATCGGATTTCAGCTGGAATAGCTGTACA 2340
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2317 AGAGACGAACAAACAGACAATGAATTCAGCAGATCGGATTTCAGCTGGAATAGCTATACC 2376
Query 2341 TCTTCATATACCACAGCAACCCCAACTTCAACACATGGAGGGAAAAAGAAAGCAGTGAAG 2400
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2377 TCTTCATATACCACAACAACCCCAACTTCAACACATGGAGGGAAAAAGAAAGCAGTGAAG 2436
Query 2401 GCTCACTTTTACTGGGTCACAAGGGAGCCAGGATCCGTTGAATGGTTTAGAGGAGTAATG 2460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2437 GCTCACTTTTACTGGGTCACAAGGGAGCCAGGATCCGTTGAATGGTTTAGAGGAGTAATG 2496
Query 2461 GAGGAAATATCAGACATGGACTGCAGAGGCCAGATTGAGTTGCACAACTACCTTACAAGC 2520
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2497 GAAGAAATATCAGACATGGACTGCAGAGGCCAGATTGAGTTGCACAACTACCTTACAAGC 2556
Query 2521 GTATATGATGAAGGTGATGCAAGATCAACCCTGATAAAAATGGTCCAGGCTTTGAACCAT 2580
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2557 GTATATGATGAAGGTGATGCAAGATCAACCCTGATAAAAATGGTTCAGGCTTTGAACCAT 2616
Query 2581 GCCAAACATGGAGTTGATATTCTATCCGGAACACGGGTGAGAACACATTTTGCAAGGCCC 2640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2617 GCCAAACATGGAGTTGATATTCTATCCGGAACACGGGTGAGAACACATTTTGCAAGGCCC 2676
Query 2641 AACTGGAAGGAAGTCTTCAGTAGCATAGCAAGAAAGCATCCAAATTCGACAGTCGGAGTG 2700
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2677 AACTGGAAGGAAGTCTTCAGTAGCATAGCAAGAAAGCATCCAAATTCGACAGTCGGCGTG 2736
Query 2701 TTTTACTGCGGCATACAAACCGTGGCAAAGGAGTTGAAGAAGCAAGCACAAGACATGAGT 2760
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2737 TTTTACTGCGGCATACCAACCGTGGCAAAGGAGTTGAAGAAGCAAGCACAAGACATGAGT 2796
Query 2761 CAAAAAACAACCACACGGTTCGAGTTCCATAAGGAGCATTTCTAA 2805
||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2797 CAAAAAACAACCACACGGTTCGAATTCCATAAGGAGCATTTCTAA 2841
Score = 1160 bits (628), Expect = 0.0
Identities = 734/785 (94%), Gaps = 7/785 (1%)
Strand=Plus/Plus
Query 1 ATGAAGTTATCGCCTCTGAGTTTCTCTACGAGTTCGAGTTTCAGTCACGCCGATGGAATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGTTATCGCCTCTGAGTTTCTCTACGAGTTCGAGTTTCAGTCACGCCGATGGAATC 60
Query 61 GACGACGGTGTTGAGTTAATATCATCTCCATTTGCCGGCGGCGCAATGCTGCCGGTTTTT 120
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATGACGGTGTTGAGTTAAGATCATCTCCATTTGCCGGCGGCGCAATGCTGCCGGTTTTT 120
Query 121 CTCAACGATTTGAGTCGTAACAGTGGAGAATCCGGAAGCGGTAGTAGCTGGGAAAGAGAG 180
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CTCAACGGTTTGAGTCGTAACAGTGGAGAATCCGGAAG---TAGTAGCTGGGAAAGAGAG 177
Query 181 CTCGTGGAGGTTACGTTAGAGCTCGACGTCGGCGATGACTCCATACTCGTCTGCGGAATG 240
||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 178 CTCGTGGAGGTGACGTTGGAGCTCGACGTCGGCGATGACTCCATACTCGTTTGCGGAATG 237
Query 241 TCTGAGGCGGCGTCTGTTGATTCTCGGGCGAGATCGGTGGATTTGGTAACCGCGAGGTTA 300
|| |||||||||||||||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct 238 TCGGAGGCGGCGTCTGTTGATTCTCGGCCGAGATCGGTGGATTTAGTAACCGCGAGATTG 297
Query 301 TCGAGGAATTTATCGAATGCGTCTACGAGAATCCGCCAGAAACTAGGGAAGTTACTGAGG 360
||||||||| |||||||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct 298 TCGAGGAATCTATCGAATGCATCTACGAGAATCCGGCAGAAACTGGGGAAATTACTGAGG 357
Query 361 TCGGAATCGTGGAAAACGACGACGTCTTCTACCGCCGGCGAGAGAGATAGAGATCTTGAA 420
||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 358 TCGGAGTCTTGGAAAACGACGACGTCTTCTACCGCCGGCGAGAGAGATAGAGATCTCGAA 417
Query 421 CGTCAGACGGCGGTGACTTTGGGGATTCTGACGGCGAGGGATAAACGGAAAGAAGACGCG 480
||||||||||||| ||||| ||| ||| ||||||||||||||||||||| |||| |||||
Sbjct 418 CGTCAGACGGCGGAGACTTCGGGAATTATGACGGCGAGGGATAAACGGAGAGAAAACGCG 477
Query 481 AAACTACAGCGATCAACGTCGAGTGCGCAAAGAGCGTTAAAAGGATTACAGTTTATAAAT 540
| | |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 478 ATATTACAGCGATCAACGTCGAGTGCGCAAAGAGCGTTAAAAGGATTACAATTTATCAAT 537
Query 541 AAAACCACGAGAGGAAATAGCTGCGTCTGCGATTGGGATTGCGATTGCGATCAGATGTGG 600
||||||||||||||||| ||||||| |||||||||||||||| |||||||||||||||||
Sbjct 538 AAAACCACGAGAGGAAACAGCTGCGACTGCGATTGGGATTGCAATTGCGATCAGATGTGG 597
Query 601 AAAAAAGTTGA-AAAGCGATTCGAATCGCTTTCTAAA-AATGGATTACTCGCCCGAGACG 658
||||||||||| ||| ||||||||||||||| ||||| || ||| ||||||| |||||||
Sbjct 598 AAAAAAGTTGAGAAA-CGATTCGAATCGCTTGCTAAAGAA-GGACTACTCGCGCGAGACG 655
Query 659 ATTTTGGCGAGTGCGTTGGGATGGTGGATTCGAAGGACTTTGCGGTGAGTGTATTCGACG 718
||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 656 ATTTTGGCGAGTGCGTTGGGATGGTGGATTCGAAGGAATTCGCGGTCAGTGTATTCGACG 715
Query 719 CGTTGGCTAGGAGAAGAAGACAGAAACTGGAGAAGATAACGAAAGATGAACTTCATGATT 778
| |||||| | ||||| ||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 716 CTTTGGCTCGAAGAAGGAGACAGAAACTGGAGAAGATAACGAGAGATGAACTTCATGACT 775
Query 779 TCTGG 783
|||||
Sbjct 776 TCTGG 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108633378740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5