BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19240.1
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472147 jgi|Araly1|472147|fgenesh2_kg.1__2101__AT1G19240.1 856 0.0
> Ahg472147 jgi|Araly1|472147|fgenesh2_kg.1__2101__AT1G19240.1
Length=670
Score = 856 bits (463), Expect = 0.0
Identities = 616/684 (90%), Gaps = 33/684 (5%)
Strand=Plus/Plus
Query 4 ATTGAACCCTAAACCCTAATTGATCG--G-CCAGA-AATGGAGGGTTTGGAGAAGTTTTA 59
|||||||||||||||||||||||||| | | || ||||||||||||||||||||||||
Sbjct 1 ATTGAACCCTAAACCCTAATTGATCGTTGTGC-GATAATGGAGGGTTTGGAGAAGTTTTA 59
Query 60 CAGCAAGATGGTGAAAGAAGCGAAATCGGCAGCTTCTTCTTCGTCGTCTTCTCTATCTGA 119
|||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||
Sbjct 60 CAGCAAGATGGTGAAAGATGCGAAATCGGCAGTTTCTTCTTCGTCATCTTCTCTATCTGA 119
Query 120 TTTTGCGGATAATCTGATGCAAGACAAACGAGCCGCCGCCGGCAACTTGACTACTACATA 179
||||||||||||||||||||| |||||||||| ||||| | |||| ||| ||||||||
Sbjct 120 TTTTGCGGATAATCTGATGCAGGACAAACGAGGCGCCGGCAGCAATTTG---ACTACATA 176
Query 180 CGACGCAGGATCCGGCACTCTGGT-AACCAGACCTCCCAGCGGAGTTTCGGTCTGGACGT 238
|||||||||||||||| ||| || || ||||||||| ||||||||||||||||||||||
Sbjct 177 CGACGCAGGATCCGGCGTTCTAGTCAA-CAGACCTCCGAGCGGAGTTTCGGTCTGGACGT 235
Query 239 GTTCAAAGTTGTGCGCTGTTTTCTTTGTCGCTGGAGTGTTTGTGGGTTATACACTTAAGA 298
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 236 GTTCAAAGTTGTGCGCTGTTTTCTTTGTCGCTGGAGTGTTTGTTGGTTATACCCTTAAGA 295
Query 299 GACGGGTTCGACGCTGGGCTTCTAAATTACTGAGAAGAATAAAGGATGATTAACTCCAAC 358
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 296 GACGGGTTCGACGCTGGGCTTCTAAATTGCTGAGAAGAATAAAGGATGATTAACTCCAAC 355
Query 359 CTC-GT-----CTTCTACTGCAAGTTTTGGTACACTTAGCACAAAGGCATTACTCTAT-T 411
||| || |||||||||| ||||||||||| ||| |||| |||||||||||||| |
Sbjct 356 CTCTGTTTTGTCTTCTACTGCGAGTTTTGGTACTGTTATCACATAGGCATTACTCTATGT 415
Query 412 -CTTATCCTTGAATGTGTTTTAGTACCAATATACTGTGCT-GAGGCACCTTATCAATGAA 469
| | || |||||||||||| ||||||||||||||||||| |||||||||| || |||||
Sbjct 416 TCCT-TC-TTGAATGTGTTTCAGTACCAATATACTGTGCTTGAGGCACCTTGTCGATGAA 473
Query 470 AATTTGTTGTTTGCTTCTCTGCCTTTGTGACTAGTAG---CTTGTGGTAATGGAAAGAGA 526
| ||| |||||| ||| ||||||| |||||||||||| ||||||||||||||||||||
Sbjct 474 ACTTTTTTGTTTACTTTTCTGCCTCTGTGACTAGTAGTAGCTTGTGGTAATGGAAAGAGA 533
Query 527 GATTGAATCATCTTGGGAAAGACACGTATATTATTTCGTATAG--TAACTTAGATTTGTT 584
||||| ||||||||||||||||| ||||||||||||||||||| ||||||| |||||||
Sbjct 534 GATTGGATCATCTTGGGAAAGACGCGTATATTATTTCGTATAGAGTAACTTATATTTGTT 593
Query 585 ATTTTCATGCCTTTAGGCGGGGTCTATACAAACAGGCAAGACAATGTTTCCTTTTTTAAC 644
||||||||||||||||||||| ||||||||||||||||||||||||||| | | |
Sbjct 594 ATTTTCATGCCTTTAGGCGGG-TCTATACAAACAGGCAAGACAATGTTTG-TG----A-C 646
Query 645 ATAGTGTATATAATCTACTTTGCT 668
||||||||||||||||||||||||
Sbjct 647 ATAGTGTATATAATCTACTTTGCT 670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24589281465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5