BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19250.1
Length=1745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312863 jgi|Araly1|312863|fgenesh1_pm.C_scaffold_1001643 2575 0.0
> Ahg312863 jgi|Araly1|312863|fgenesh1_pm.C_scaffold_1001643
Length=1593
Score = 2575 bits (1394), Expect = 0.0
Identities = 1531/1598 (96%), Gaps = 5/1598 (0%)
Strand=Plus/Plus
Query 26 ATGGCTTCTAACTATGATAAGCTTACTTCTTCGAGAGTAGCCATCATCGGTGCTGGTGTT 85
||||||||| |||| ||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1 ATGGCTTCTTACTACGATAAGCTTACTTCTTCAAGAGTAGCGATCATCGGTGCTGGTGTT 60
Query 86 AGCGGATTAGCAGCCGCTAAGAACTTAGTTCATCACAACCCGACCGTATTCGAAGCCTCG 145
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 AGCGGATTAGCAGCCGCTAAGAACTTAGCTCATCACAACCCGACCGTATTCGAAGCCTCG 120
Query 146 GATTCAGTCGGAGGTGTTTGGAGGAGCTGCACTTACGAGACGACTAAATTACAATCGGCT 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GATTCAGTCGGAGGTGTTTGGAGGAGCTGCACTTACGAGACGACTAAATTACAATCGGCT 180
Query 206 CGAGTCGATTACGAGTTCTCCGACTTTCCATGGCCCAATAATAGAGATGACACAACTTTC 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CGAGTCGATTACGAGTTCTCCGACTTTCCATGGCCCAATAATAGAGATGACACAACTTTC 240
Query 266 CCACCTTACCTTGAGATATTAGATTACTTGGAATCTTATGCCAAACATTTTGATCTTCTC 325
||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 241 CCATCTTACGTTGAGATATTAGATTACTTGGAATCTTATGCTAAGCATTTTGATCTTCTC 300
Query 326 AAATTCATGAAGTTTGGCTCTAAGGTCATCGAAGTAAGGTTCATCGGTGATGGCGAAACT 385
|| |||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||
Sbjct 301 AAGTTCATGAAGTTTGGCTCTAAGGTCATCGAAGTTAGGTTCATCGGTGACGGCCAAACT 360
Query 386 CCTCAGATGGTTGACCTTGGTGCTTACGGCAACTTGTTGCCCGGAAAACCTGTATGGGAA 445
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 361 CCTCAGATGGTTGACCTTGGTGCTTACGGCAATTTGTTGCCCGGAAAACCTGTATGGGAA 420
Query 446 GTTGCTGTTCAGATCGGAGATTCTGGAGATATTCAGTGGCATGCATTTGAGTTCGTGGTT 505
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTGCAGTTCAGACCGGAGATTCTGGAGATATTCAGTGGCATGCATTTGAGTTCGTGGTA 480
Query 506 GTGTGTACCGGGAAATACGGCGACGTTCCAAGAATACCAGCTTTTCCGGCAAAGAAAGGG 565
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 GTGTGTACCGGAAAATACGGCGACGTTCCAAGAATACCTGCTTTTCCGGCAAAGAAAGGG 540
Query 566 CCGGAGATGTTTCAAGGAAAAGTAATGCATTCGATGGATTACTGCAAGTTAGAGAAAGAA 625
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCGGAGATATTTCAAGGAAAAGTAATGCATTCGATGGATTACTGCAAGTTAGAGAAAGAC 600
Query 626 GAAGCTTCTACTCTCCTCAGTGGCAAAAAAGTAGCCGTCATCGGCTTCAAGAAATCCGCC 685
|||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 601 GAAGCTTCTAGTCTCCTCCGTGGCAAAAAAGTGGCCGTCATCGGCTTCAAGAAATCCGCC 660
Query 686 ATTGATTTGGCTTTAGAGTCTGCTTTAGCTAATCAAGGGGAAGGAGGAAAAGCTTGCACA 745
|| ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 661 ATCGATTTGGCTTTAGAGTCTGCTTTAGCTAATCAAGG--A-GGAGGAAAAGCTTGCACA 717
Query 746 ATGGTGGTGAGAACAACTCATTGGGGGATCCCACATTATTGGGTGTGGGGCTTACCATTC 805
|||||||||||||| |||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 718 ATGGTGGTGAGAACTACTCATTGGGTGTTCCCACATTATTGGGTGTGGGGTTTACCATTC 777
Query 806 TTCTTGTTCTACTCTTCGAGAGCTTCTCAGTTCCTCCATGATAGGCCTAACCAAAGCTTC 865
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TTCTTGTTCTACTCAACGAGAGCTTCTCAGTTCCTCCATGATAGGCCTAACCAAAGCTTC 837
Query 866 CTTAGAACTCTCTTTTGCCTCCTCTTCTCTCTTCTGCGTGCCGTAGTTTCCAAGTTCATC 925
||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||
Sbjct 838 CTTAGAACTCTCTTTTGCCTCATCTTCTCTCTTCTGCGTGCTGCGGTTTCCAAGTTCATC 897
Query 926 GAATCATATGTTTTATGGAAGCTACCTCTTGAGAAATATGGTCTAAAACCAAACCATTCT 985
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 898 GAATCATATGTTTTGTGGAAGCTACCTCTTGAGAAATATGGTCTTAAACCGGACCATTCT 957
Query 986 TTCGAGGAAGACTATGCTTCTTGTCAAATGGCGATCATACCGGAGAATTTCTTTGAGGAA 1045
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 958 TTCGAGGAAGACTACGCTTCTTGTCAAATGGCGATCATACCGGAGAAATTCTTTGAGGAA 1017
Query 1046 GCGGATAAAGGGATGATCCGGTTTAAGAAATCATCAAAATGGTGGTTTTATGAAGAAGGG 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1018 GCGGATAAAGGGATGATCCGGTTTAAGAAATCATCAAAATGGTGGTTTTATGATGAAGGG 1077
Query 1106 ATTGTGTTTGAAGATGGGACGACATTAGAAGCTGATGTTGTGATACTTGCTACTGGTTAT 1165
|||| ||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 1078 ATTGAGTTTGAAGATGGGACTACGTTAGAAGCTGATGTTGTGATACTTGCGACTGGTTAT 1137
Query 1166 GATGGCAAGAAGAAGCTCAAAGCTATTGTTCCTGAACCTTTCCGAACTTGGCTTGAGTTT 1225
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1138 GATGGTAAGAAGAAGCTCAAAGCTATTGTTCCCGAACCTTTCCGAACTTGGCTTGAGTTT 1197
Query 1226 CCAAGCGGTGTCATGCCTTTATACAGGGGAACAATCCATCCATTGATACCAAACATGGGT 1285
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1198 CCATGCGGTGTCATGCCTTTATACAGGGGAACAATCCATCCATTGATACCGAACATGGGT 1257
Query 1286 TTCGTAGGATACGTCCAAAGCAGCTCGAACTTACACACATCAGAGCTACGTTCAATGTGG 1345
||||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||||
Sbjct 1258 TTCGTGGGATACGTCCAAAGCAACTCGAACTTACACACATCAGAGCTACGTACGATGTGG 1317
Query 1346 CTAAGCCGGCTAGTGGATGAGAAATTCAGATTACCAAGCAAAGAGAAGATGTTGGATCAA 1405
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 CTAAGCCGGCTGGTGGATGAGAAATTCAGATTACCAAGCAAAGAGAAGATGTTGGATCAA 1377
Query 1406 TTCTTAAAAGAAATGGAAGTGACGAGAAACTCAAGCAGATTCTACAAACGTCATTGCATT 1465
||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1378 TTCTTCAAAGAAATGGAAGTGACGAGAAATTCAAGCAGATTCTATAAACGTCATTGCATT 1437
Query 1466 TCCACGTTCAGCATCCAACATGCTGATGATATGTGCAACGACATGGGACTCAATCCTTGG 1525
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1438 TCCACTTTCAGCATCCAACATGCTGATGATATGTGCAACGACATGGGACTCAATCCTTGG 1497
Query 1526 CGTAAATCCAACTTCCTCCTTGAAGCTTTTAGTCCTTATGGTTCTCAAGATTACCGACTC 1585
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1498 CGTAAATCCAACTTGCTCCTTGAAGCTTTTAGTCCTTATGGTTCTCAAGATTACCGACTC 1557
Query 1586 GGTCAAGAAGAAAAAGAAGATATGACTGCTTAAACTAA 1623
||||||||||||||||||||| | | |||||||||||
Sbjct 1558 GGTCAAGAAGAAAAAGAAGATG-G-CGGCTTAAACTAA 1593
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65477131155
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5