BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19250.1 Length=1745 Score E Sequences producing significant alignments: (Bits) Value Ahg312863 jgi|Araly1|312863|fgenesh1_pm.C_scaffold_1001643 2575 0.0 > Ahg312863 jgi|Araly1|312863|fgenesh1_pm.C_scaffold_1001643 Length=1593 Score = 2575 bits (1394), Expect = 0.0 Identities = 1531/1598 (96%), Gaps = 5/1598 (0%) Strand=Plus/Plus Query 26 ATGGCTTCTAACTATGATAAGCTTACTTCTTCGAGAGTAGCCATCATCGGTGCTGGTGTT 85 ||||||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 1 ATGGCTTCTTACTACGATAAGCTTACTTCTTCAAGAGTAGCGATCATCGGTGCTGGTGTT 60 Query 86 AGCGGATTAGCAGCCGCTAAGAACTTAGTTCATCACAACCCGACCGTATTCGAAGCCTCG 145 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 61 AGCGGATTAGCAGCCGCTAAGAACTTAGCTCATCACAACCCGACCGTATTCGAAGCCTCG 120 Query 146 GATTCAGTCGGAGGTGTTTGGAGGAGCTGCACTTACGAGACGACTAAATTACAATCGGCT 205 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 GATTCAGTCGGAGGTGTTTGGAGGAGCTGCACTTACGAGACGACTAAATTACAATCGGCT 180 Query 206 CGAGTCGATTACGAGTTCTCCGACTTTCCATGGCCCAATAATAGAGATGACACAACTTTC 265 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 CGAGTCGATTACGAGTTCTCCGACTTTCCATGGCCCAATAATAGAGATGACACAACTTTC 240 Query 266 CCACCTTACCTTGAGATATTAGATTACTTGGAATCTTATGCCAAACATTTTGATCTTCTC 325 ||| ||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| Sbjct 241 CCATCTTACGTTGAGATATTAGATTACTTGGAATCTTATGCTAAGCATTTTGATCTTCTC 300 Query 326 AAATTCATGAAGTTTGGCTCTAAGGTCATCGAAGTAAGGTTCATCGGTGATGGCGAAACT 385 || |||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||| Sbjct 301 AAGTTCATGAAGTTTGGCTCTAAGGTCATCGAAGTTAGGTTCATCGGTGACGGCCAAACT 360 Query 386 CCTCAGATGGTTGACCTTGGTGCTTACGGCAACTTGTTGCCCGGAAAACCTGTATGGGAA 445 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 361 CCTCAGATGGTTGACCTTGGTGCTTACGGCAATTTGTTGCCCGGAAAACCTGTATGGGAA 420 Query 446 GTTGCTGTTCAGATCGGAGATTCTGGAGATATTCAGTGGCATGCATTTGAGTTCGTGGTT 505 ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 GTTGCAGTTCAGACCGGAGATTCTGGAGATATTCAGTGGCATGCATTTGAGTTCGTGGTA 480 Query 506 GTGTGTACCGGGAAATACGGCGACGTTCCAAGAATACCAGCTTTTCCGGCAAAGAAAGGG 565 ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 481 GTGTGTACCGGAAAATACGGCGACGTTCCAAGAATACCTGCTTTTCCGGCAAAGAAAGGG 540 Query 566 CCGGAGATGTTTCAAGGAAAAGTAATGCATTCGATGGATTACTGCAAGTTAGAGAAAGAA 625 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 CCGGAGATATTTCAAGGAAAAGTAATGCATTCGATGGATTACTGCAAGTTAGAGAAAGAC 600 Query 626 GAAGCTTCTACTCTCCTCAGTGGCAAAAAAGTAGCCGTCATCGGCTTCAAGAAATCCGCC 685 |||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| Sbjct 601 GAAGCTTCTAGTCTCCTCCGTGGCAAAAAAGTGGCCGTCATCGGCTTCAAGAAATCCGCC 660 Query 686 ATTGATTTGGCTTTAGAGTCTGCTTTAGCTAATCAAGGGGAAGGAGGAAAAGCTTGCACA 745 || ||||||||||||||||||||||||||||||||||| | |||||||||||||||||| Sbjct 661 ATCGATTTGGCTTTAGAGTCTGCTTTAGCTAATCAAGG--A-GGAGGAAAAGCTTGCACA 717 Query 746 ATGGTGGTGAGAACAACTCATTGGGGGATCCCACATTATTGGGTGTGGGGCTTACCATTC 805 |||||||||||||| |||||||||| | |||||||||||||||||||||| ||||||||| Sbjct 718 ATGGTGGTGAGAACTACTCATTGGGTGTTCCCACATTATTGGGTGTGGGGTTTACCATTC 777 Query 806 TTCTTGTTCTACTCTTCGAGAGCTTCTCAGTTCCTCCATGATAGGCCTAACCAAAGCTTC 865 |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 778 TTCTTGTTCTACTCAACGAGAGCTTCTCAGTTCCTCCATGATAGGCCTAACCAAAGCTTC 837 Query 866 CTTAGAACTCTCTTTTGCCTCCTCTTCTCTCTTCTGCGTGCCGTAGTTTCCAAGTTCATC 925 ||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||| Sbjct 838 CTTAGAACTCTCTTTTGCCTCATCTTCTCTCTTCTGCGTGCTGCGGTTTCCAAGTTCATC 897 Query 926 GAATCATATGTTTTATGGAAGCTACCTCTTGAGAAATATGGTCTAAAACCAAACCATTCT 985 |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 898 GAATCATATGTTTTGTGGAAGCTACCTCTTGAGAAATATGGTCTTAAACCGGACCATTCT 957 Query 986 TTCGAGGAAGACTATGCTTCTTGTCAAATGGCGATCATACCGGAGAATTTCTTTGAGGAA 1045 |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 958 TTCGAGGAAGACTACGCTTCTTGTCAAATGGCGATCATACCGGAGAAATTCTTTGAGGAA 1017 Query 1046 GCGGATAAAGGGATGATCCGGTTTAAGAAATCATCAAAATGGTGGTTTTATGAAGAAGGG 1105 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1018 GCGGATAAAGGGATGATCCGGTTTAAGAAATCATCAAAATGGTGGTTTTATGATGAAGGG 1077 Query 1106 ATTGTGTTTGAAGATGGGACGACATTAGAAGCTGATGTTGTGATACTTGCTACTGGTTAT 1165 |||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 1078 ATTGAGTTTGAAGATGGGACTACGTTAGAAGCTGATGTTGTGATACTTGCGACTGGTTAT 1137 Query 1166 GATGGCAAGAAGAAGCTCAAAGCTATTGTTCCTGAACCTTTCCGAACTTGGCTTGAGTTT 1225 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1138 GATGGTAAGAAGAAGCTCAAAGCTATTGTTCCCGAACCTTTCCGAACTTGGCTTGAGTTT 1197 Query 1226 CCAAGCGGTGTCATGCCTTTATACAGGGGAACAATCCATCCATTGATACCAAACATGGGT 1285 ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1198 CCATGCGGTGTCATGCCTTTATACAGGGGAACAATCCATCCATTGATACCGAACATGGGT 1257 Query 1286 TTCGTAGGATACGTCCAAAGCAGCTCGAACTTACACACATCAGAGCTACGTTCAATGTGG 1345 ||||| |||||||||||||||| |||||||||||||||||||||||||||| | |||||| Sbjct 1258 TTCGTGGGATACGTCCAAAGCAACTCGAACTTACACACATCAGAGCTACGTACGATGTGG 1317 Query 1346 CTAAGCCGGCTAGTGGATGAGAAATTCAGATTACCAAGCAAAGAGAAGATGTTGGATCAA 1405 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 CTAAGCCGGCTGGTGGATGAGAAATTCAGATTACCAAGCAAAGAGAAGATGTTGGATCAA 1377 Query 1406 TTCTTAAAAGAAATGGAAGTGACGAGAAACTCAAGCAGATTCTACAAACGTCATTGCATT 1465 ||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 1378 TTCTTCAAAGAAATGGAAGTGACGAGAAATTCAAGCAGATTCTATAAACGTCATTGCATT 1437 Query 1466 TCCACGTTCAGCATCCAACATGCTGATGATATGTGCAACGACATGGGACTCAATCCTTGG 1525 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1438 TCCACTTTCAGCATCCAACATGCTGATGATATGTGCAACGACATGGGACTCAATCCTTGG 1497 Query 1526 CGTAAATCCAACTTCCTCCTTGAAGCTTTTAGTCCTTATGGTTCTCAAGATTACCGACTC 1585 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1498 CGTAAATCCAACTTGCTCCTTGAAGCTTTTAGTCCTTATGGTTCTCAAGATTACCGACTC 1557 Query 1586 GGTCAAGAAGAAAAAGAAGATATGACTGCTTAAACTAA 1623 ||||||||||||||||||||| | | ||||||||||| Sbjct 1558 GGTCAAGAAGAAAAAGAAGATG-G-CGGCTTAAACTAA 1593 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65477131155 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5