BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19270.1
Length=2346
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472149 jgi|Araly1|472149|fgenesh2_kg.1__2103__AT1G19270.1 3417 0.0
> Ahg472149 jgi|Araly1|472149|fgenesh2_kg.1__2103__AT1G19270.1
Length=2321
Score = 3417 bits (1850), Expect = 0.0
Identities = 2207/2368 (93%), Gaps = 70/2368 (3%)
Strand=Plus/Plus
Query 1 CGTGGGGAACGTTTTTTCCTGgaagaagaagaagaagaGCTCAACAAGCTCAACGACCAA 60
||| |||||||||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 1 CGTCGGGAACGTTTTTTCGTGGAAGAAGAAGAAG-AGCTCTCAACAAGCTCAACGACC-- 57
Query 61 AAAACTTCGGACACGAAGACTTTTTAATTCATTTCTCCTCTTTTG-ttttt-ttCGTTCC 118
|||||||| ||||||||||||||||| || ||||| ||| ||||| ||||| || || |
Sbjct 58 AAAACTTCCGACACGAAGACTTTTTATTTAATTTCCCCT-TTTTGATTTTTCTT-TTTTC 115
Query 119 AAAATATTCGATACTC-TCGATC-TCTTCTTCGTGATCCTCATTAAATAAAAATACGATT 176
||| || || ||| || || ||||||| ||||||||||| | ||||| ||||||||
Sbjct 116 TCGATACTCAAT-CTCTTC-TTCTTCTTCTTGGTGATCCTCATGACATAAATATACGATT 173
Query 177 TTTATTCtttttttGTGAGTGCACCAAATTTTTTGACTTTGGATTAGCGTAGAATTCAAG 236
||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 174 TTTATTC--------T---TGCACCAAATTTTTTGACTTTGGATTAGCGTAGAAATCAAG 222
Query 237 CACATTCTGGGTTTATTCGTGTATGAGTAGACATTGATTTTGTCAAAGTTGCATTCTTTT 296
|||||||||||||||||||||||| ||| ||||||||||||||||||| | | || ||||
Sbjct 223 CACATTCTGGGTTTATTCGTGTATTAGTGGACATTGATTTTGTCAAAGCTACGTT-TTTT 281
Query 297 ATATaaaaaaaGTTTAAtttccttttttcttttct-ttt-ctctttttt-ttttt--tt- 350
||| ||||||||| |||||||||||||||||||| ||| |||||||| ||||| ||
Sbjct 282 -TAT-AAAAAAGTTGAATTTCCTTTTTTCTTTTCTCTTTAGTCTTTTTTATTTTTCCTTC 339
Query 351 tCCCCCATGTTATAGATTC------T-T-CCCCAAATTTTGAAGAAAGGAGAGAACTAAA 402
| ||||||||||||||||| | | |||||||||||||||||||||||||||||||
Sbjct 340 TTCCCCATGTTATAGATTCTTAGATTCTCCCCCAAATTTTGAAGAAAGGAGAGAACTAAA 399
Query 403 GAGTCCTTTTTGAGATTCTTTTGCTGCTTCCCTTGCTTGATTAGATCATTTTTGTGATTC 462
|||||||||||||||||||||||||||| | |||||||||||||||| ||| | |
Sbjct 400 GAGTCCTTTTTGAGATTCTTTTGCTGCTGCTGTTGCTTGATTAGATCA--TTT-CG--T- 453
Query 463 TGGATTTTGTGGGGGTTTCGTGAAGCTTATTGGGATCTTATCTGATTCAGGATTTTCTCA 522
| || || | | ||| | |||||||||||||||||||||||| |||||||||||||
Sbjct 454 T-GA--TTCT--CGATTT--T-AAGCTTATTGGGATCTTATCTGATCCAGGATTTTCTCA 505
Query 523 AGGCTGCATTGCCGTATGAGCAGATAGTTTTATTTAGGCATTATGGGTTGGTTTAACAAG 582
||||| ||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 506 AGGCTACATTGCC-TATGAGCAGATAG-TTTGTTTAGGCATTATGGGTTGGTTTAACAAG 563
Query 583 ATCTTTAAAGGCTCTAACCAAAGGCTCCGGGTTGGGAATAATAAGCACAATCACAATGTT 642
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |||||
Sbjct 564 ATCTTTAAAGGCTCTAACCAAAGGCTCCGGGTGGGGAATAATAAGCACCATCACCATGTT 623
Query 643 TATTACGATAATTATCCGACTGCTTCACATGATGATGAGCCTAGTGCGGCGGATACAGAT 702
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 624 TATTACGATAATTATCCGACTGCTTCACATGATGATGAGCCTAGT---GCGGATACAGAT 680
Query 703 GCTGATAATGATGAACCTCATCATACTCAGGAACCATCTACATCTGAGGATAATACATCG 762
||||||||||||| | | | |||||| |||||||||||||| |||||||||||||||||
Sbjct 681 GCTGATAATGATG-AGC-C-TCATACACAGGAACCATCTACCTCTGAGGATAATACATCC 737
Query 763 AATGACCAGGAAAATGAAGACATAGACCGTGCAATTGCATTGTCGCTTTTAGAAGAGAAT 822
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 738 AATGACCAGGAAAATGAAGACATAGACCGTGCAATTGCATTGTCTCTTTTAGAAGAGAAT 797
Query 823 CAAGAACAGACAAGTATAAGCGGGAAATACTCGA---TGCCGGTGGATGAAGATGAGCAA 879
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 798 CAAGAACAGACAAGTATAAGCGGGAAATACTCGACGCCGCCGGTGGATGAAGATGAGCAA 857
Query 880 CTTGCTAGAGCCCTACAAGAAAGTATGGTAGTTGGGAATTCACCCCGTCACAAAAGTGGA 939
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 858 CTTGCTAGAGCCCTACAAGAAAGTATGGTAGTTGGGAATTCACCACGTCACAAAAATGGA 917
Query 940 AGTACATATGATAATGGGAATGCATAT-GGAGCTGGAGATTTATATGGGAATGGACATAT 998
||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||
Sbjct 918 AGTACATATGATAATGGGAATGCATATGGGA-CTGGAGATATATATGGGAATGGACATAT 976
Query 999 GTATGGAGGAGGAAATGTATATGCAAATGGAGATATTTATTATCCAAGACCTATTACTTT 1058
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 977 GTATGGAGGAGGAAATGTATACGCAAATGGAGATATTTATTATCCAAGACCTATTACTTT 1036
Query 1059 TCAAATGGATTTCAGGATTTGTGCTGGCTGTAATATGGAGATTGGCCATGGAAGATTTCT 1118
|||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1037 TCAAATGGATTTTAGAATTTGTGCTGGCTGCAATATGGAGATTGGCCATGGAAGATTTCT 1096
Query 1119 GAATTGCCTTAATTCACTATGGCATCCAGAATGTTTTCGATGTTATGGCTGCAGTCAGCC 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1097 GAATTGCCTTAATTCACTATGGCATCCAGAATGTTTTCGATGTTATGGCTGCAGTCAGCC 1156
Query 1179 GATTTCTGAGTACGAGTTTTCAACATCAGGGAACTACCCTTTTCACAAGGCTTGTTACAG 1238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157 GATTTCTGAGTACGAGTTTTCAACATCAGGGAACTACCCTTTTCACAAGGCTTGTTACAG 1216
Query 1239 GGAGAGATATCATCCTAAATGTGATGTCTGCAGCCACTTTATACCAACAAATCATGCTGG 1298
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1217 GGAGAGATATCATCCAAAATGTGATGTCTGCAGCCACTTTATTCCAACAAATCATGCTGG 1276
Query 1299 TCTTATTGAATATAGGGCACATCCTTTTTGGGTTCAGAAGTATTGTCCTTCTCACGAACA 1358
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1277 TCTTATTGAATATAGGGCACATCCTTTTTGGGTTCAAAAGTATTGCCCTTCTCACGAACA 1336
Query 1359 CGATGCTACCCCGAGATGTTGCAGTTGTGAAAGAATGGAGCCACGGAATACGAGATATGT 1418
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1337 CGATACTACCCCAAGATGTTGCAGTTGTGAAAGAATGGAGCCACGGAATACGAGATATGT 1396
Query 1419 TGAACTTAACGATGGACGGAAACTTTGCCTTGAGTGTTTGGACTCGGCGGTCATGGACAC 1478
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1397 TGAACTTAACGATGGACGGAAACTTTGCCTTGAGTGTTTGGACTCAGCGGTCATGGACAC 1456
Query 1479 CATGCAATGCCAACCTCTGTACTTGCAAATACAAAATTTCTATGAAGGACTCAACATGAA 1538
|||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||
Sbjct 1457 CATGCAATGCCAACCTCTGTACTTGCAAATACAAGACTTCTATGAAGGACTTAACATGAA 1516
Query 1539 GGTAGAGCAGGAAGTTCCACTCCTCTTGGTTGAGAGACAAGCACTTAACGAAGCCAGAGA 1598
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1517 GGTAGAGCAGGAAGTTCCACTCCTCTTGGTTGAGAGGCAAGCACTTAACGAAGCCAGAGA 1576
Query 1599 AGGTGAAAAGAATGGTCACTATCACATGCCAGAAACAAGAGGACTCTGCCTTTCAGAAGA 1658
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1577 AGGTGAAAAGAATGGTCACTATCACATGCCAGAAACAAGAGGACTCTGCCTATCAGAAGA 1636
Query 1659 ACAAACTGTTAGTACTGTAAGAAAGCGATCAAAGCATGGCACAGGAAAATGGGCCGGGAA 1718
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1637 ACAAACTGTTAGTACTGTAAGAAAGCGATCAAAGCATGGCACAGGAAATTGGGCTGGGAA 1696
Query 1719 TATTACAGAACCTTACAAGTTAACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATT 1778
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1697 TATTACAGAGCCTTACAAGTTGACACGGCAATGTGAAGTTACCGCCATTCTCATCTTATT 1756
Query 1779 CGGGCTCCCTAGGTTACTTACTGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGAT 1838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1757 CGGGCTCCCTAGGTTACTTACTGGTTCGATTCTAGCTCATGAGATGATGCATGCGTGGAT 1816
Query 1839 GAGGCTCAAAGGATTCCGAACACTGAGCCAAGATGTTGAAGAAGGTATATGTCAAGTGAT 1898
|||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1817 GAGGCTTAGAGGATTCCGAACACTGAGCCAAGACGTTGAAGAAGGTATATGTCAAGTGAT 1876
Query 1899 GGCTCATAAATGGTTAGATGCTGAGTTAGCTGCTGGTTCAACAAATAGCAATGCTGCATC 1958
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1877 GGCTCATAAGTGGTTAGAAGCTGAGTTAGCTGCTGGTTCAACAAATAGCAATGCTGCATC 1936
Query 1959 ATCATCCTCCTCTTCTCAAGGACTGAAAAAGGGACCGAGATCTCAGTACGAGAGAAAGCT 2018
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1937 ATCATCCTCTTCTTCTCAAGGACTGAAAAAGGGACCGAGATCTCAGTACGAGAGAAAGCT 1996
Query 2019 TGGTGAGTTTTTCAAGCACCAAATCGAGTCTGATGCTTCTCCGGTTTATGGAGACGGGTT 2078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1997 TGGTGAGTTTTTCAAGCACCAAATCGAGTCTGATGCTTCTCCGGTTTATGGAGACGGGTT 2056
Query 2079 CAGAGCTGGGAGGTTAGCTGTTCACAAGTACGGTTTGCGAAAAACACTTGAGCATATACA 2138
||| |||||| ||||||| ||||| || |||||||||||||| |||||||||||||||||
Sbjct 2057 CAGGGCTGGGCGGTTAGCGGTTCAAAAATACGGTTTGCGAAAGACACTTGAGCATATACA 2116
Query 2139 GATGACCGGTAGATTCCCGGTTTAAGAACCCAAATGGACAAGGTCTTCTACTTTATTTAT 2198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2117 GATGACCGGTAGATTCCCGGTTTAAGAACCCAAATGGACAAGGTCTTCTACTTTATTTAT 2176
Query 2199 AGGATCCTTGGTAGATTATTATTATATGCTCTAATTCTTTTGGTGGAAAATGTACTCTCG 2258
|||||||||||||||||||| |||||||||||| ||||||||||||||| || ||| |||
Sbjct 2177 AGGATCCTTGGTAGATTATTGTTATATGCTCTA-TTCTTTTGGTGGAAATTGAACTGTCG 2235
Query 2259 ACCATATTCTTATGTGTAGTCTCATTCGATGATTCTTT-GTATTCCTCTGTTAAAATCCA 2317
|||||||||||||||||| || ||||||||||||||| ||||| || ||||||||||||
Sbjct 2236 ACCATATTCTTATGTGTAATC--ATTCGATGATTCTTTTGTATTTCTGTGTTAAAATCCA 2293
Query 2318 TCAGAATCAGATTCAGTGTTTTCTTTGT 2345
|||||||||||||| |||||||||||||
Sbjct 2294 TCAGAATCAGATTCGGTGTTTTCTTTGT 2321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88369368400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5