BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19300.1
Length=1517
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472152 jgi|Araly1|472152|fgenesh2_kg.1__2106__AT1G19300.1 1962 0.0
Ahg937924 jgi|Araly1|937924|scaffold_502115.1 333 2e-90
> Ahg472152 jgi|Araly1|472152|fgenesh2_kg.1__2106__AT1G19300.1
Length=1437
Score = 1962 bits (1062), Expect = 0.0
Identities = 1303/1411 (92%), Gaps = 50/1411 (4%)
Strand=Plus/Plus
Query 13 ttttttAATTTTCCTCTCTCTT----ACACACACACATGATAAAAAGTGTTTAGAGACAG 68
||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1 TTTGTTAATTTTCCTCTCTCTTACACACACACACACATGATAAAAAGTCTTTAGAGACAG 60
Query 69 CTCTTCTCTTC-----T-T--GTTCTCAGTTTGAGAGAAACAAAACCTTCCAATACAACC 120
||||||||||| | | |||||||||||||||||||||||||||||||||||| |
Sbjct 61 CTCTTCTCTTCATGTTTCTCAATTCTCAGTTTGAGAGAAACAAAACCTTCCAATACAATC 120
Query 121 AGAGAGTCGAC---GAAG-AAGAAAGAAACCATGTCCCAACA---TCTTCTTCTTCTCAT 173
||||||||| | |||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 121 AGAGAGTCGTCTGAGAAGAAAGAAAGAAACCATGTCCCAACATCTTCTTCTTCTTCTCAT 180
Query 174 TCTCCTCTCGCTACTTCTTCTTCATAAACCCATTTCCGCCACTACAATTATTCAAAAATT 233
||||||||| || |||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct 181 TCTCCTCTCACTTCTTCTTCTTCATAATCCCATTTCCGCCTCTCCAATTATTCAAAAATT 240
Query 234 CAAAGAAGCCCCACAGTTTTACAATTCTGCAGATTGCCCCTTAATCGATGACTCCGAGTC 293
||||||||||||||||||||||||||| |||||||||||| ||||||||| | ||
Sbjct 241 CAAAGAAGCCCCACAGTTTTACAATTCGGCAGATTGCCCCCCAATCGATGA---C---TC 294
Query 294 CGACGATGACGTGGTCGCCAAACCAATCTTCTGCTCACGTCGAGCTGTCCACGTGGCGAT 353
|||||||||||||| ||||||||||||| ||||||| || ||||||||||||||||||||
Sbjct 295 CGACGATGACGTGGCCGCCAAACCAATCATCTGCTCCCGCCGAGCTGTCCACGTGGCGAT 354
Query 354 GACACTCGACGCCGCCTACATTCGTGGCTCAGTCGCCGCTGTTCTCTCCGTCCTCCAACA 413
|||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 355 GACACTCGACGCCGCCTACATTCGCGGTTCAGTCGCCGCCGTTCTCTCCGTCCTCCAACA 414
Query 414 CTCTTCTTGTCCTGAAAACATTGTTTTCCACTTCGTCGCCTCTGCTTCCGCCGACGCTTC 473
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 415 CTCTTCTTGCCCTGAAAACATTGTTTTCCACTTCGTCGCCTCTGCTTCCGCCGACGCGTC 474
Query 474 TTCCTTACGAGCCACCATATCCTCCTCTTTCCCTTACCTTGATTTCACCGTCTACGTCTT 533
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 475 TTCCTTACGCGCCACCATCTCCTCCTCTTTCCCTTACCTTGATTTCACCGTCTACGTCTT 534
Query 534 CAACGTCTCCTCCGTCTCTCGCCTTATCTCCTCCTCTATCCGCTCCGCACTAGACTGTCC 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 CAACGTCTCCTCCGTCTCTCGCCTTATCTCCTCCTCTATCCGCTCCGCACTAGACTGTCC 594
Query 594 TTTAAACTACGCAAGAAGCTACCTCGCCGATCTCCTCCCTCCCTGCGTCCGCCGCGTCGT 653
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 595 TTTAAACTACGCAAGAAGCTACCTCGCTGATCTCCTCCCTCCATGCGTCCGCCGCGTCGT 654
Query 654 CTACCTAGACTCCGATCTGATCCTCGTCGACGACATAGCAAAACTCGCCGCCACAGATCT 713
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 655 CTACCTAGACTCCGATCTAATCCTCGTCGACGACATCGCAAAACTCGCCGCCACAGATCT 714
Query 714 CGGCCGTGATTCAGTCCTCGCCGCGCCGGAATACTGCAACGCCAATTTCACTTCATACTT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CGGCCGTGATTCAGTCCTCGCCGCGCCGGAATACTGCAACGCCAATTTCACTTCATACTT 774
Query 774 CACATCAACCTTCTGGTCTAATCCGACTCTCTCTTTAACCTTCGCCGATCGGAAAGCATG 833
|||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||
Sbjct 775 CACATCAACCTTCTGGTCAAATCCGACTCTCTCTTTAACCTTCGCCGATAGAAAAGCTTG 834
Query 834 CTACTTCAACACTGGAGTCATGGTGATCGATCTTTCCCGGTGGCGCGAAGGCGCGTACAC 893
|||||||||||| |||||||||||||||||||| || |||||||||| ||||||||||||
Sbjct 835 CTACTTCAACACCGGAGTCATGGTGATCGATCTCTCGCGGTGGCGCGGAGGCGCGTACAC 894
Query 894 GTCACGCATCGAAGAGTGGATGGCGATGCAAAAGAGAATGAGAATTTACGAGCTTGGTTC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 GTCACGCATCGAAGAGTGGATGGCGATGCAAAAGAGAATGAGAATTTACGAGCTTGGTTC 954
Query 954 GTTACCACCGTTTTTATTGGTTTTTGCCGGTTTGATTAAACCGGTTAATCATCGGTGGAA 1013
||||||||||||||| ||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 955 GTTACCACCGTTTTTGCTGGTTTTCGCCGGTTTGATTAAACCGGTAAATCATCGATGGAA 1014
Query 1014 CCAACACGGTTTAGGAGGTGATAATTTCAGAGGACTGTGTAGAGATCTCCATCCTGGTCC 1073
||| |||||||||||||||||||||||||||||||| || |||||||| || ||||||||
Sbjct 1015 CCAGCACGGTTTAGGAGGTGATAATTTCAGAGGACTATGCAGAGATCTGCACCCTGGTCC 1074
Query 1074 GGTGAGTCTGTTGCATTGGAGTGGGAAAGGTAAGCCATGGGCTAGGCTTGATGCTGGTCG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1075 GGTGAGTCTGTTGCATTGGAGTGGGAAAGGTAAGCCATGGGCTAGGCTTGACGCTGGTCG 1134
Query 1134 GCCTTGTCCTTTAGACGCGCTTTGGGCTCCGTATGATCTTCTTCAAACGCCGTTCGCGTT 1193
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1135 GCCTTGTCCTTTAGACGCGCTTTGGGCTCCGTATGATCTTCTTCAAACGCCTTTCGCGCT 1194
Query 1194 GGATTCTTGACCAGTCTCGATCGGTTTACTTAT-T-ATTAATACCGGTACATACATATAT 1251
|||||||| |||||||||| | ||||||||| | |||| |||||||||||| | ||
Sbjct 1195 GGATTCTTAACCAGTCTCG---G-TTTACTTATATTATTA-TACCGGTACATA--TC-AT 1246
Query 1252 ACAATATACAGGTGAATTTTTGTTTTTACTGTACATCGATTCGTAAATCATAC-A-A-CC 1308
| ||||||||||| ||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1247 A---TATACAGGTGATTTTTTGTTTTTACTGTACATCGATTCGTAAATCATACTATAACC 1303
Query 1309 GAAG-AAGaaaaaaaaCAttttgctttttgcttttgttcgttgttgttttcattggtttt 1367
|||| || |||||||||||||||||||| | || || |||| |||| ||| ||||||
Sbjct 1304 GAAGGAAAAAAAAAAACATTTTGCTTTT-G-TTCC-TT-GTTG--GTTT-CATCGGTTTT 1356
Query 1368 gttttgGAGTATAGAAGAGAATATACaaaaa 1398
|||||||||||||| |||||||| | |||||
Sbjct 1357 GTTTTGGAGTATAGCAGAGAATA-ATAAAAA 1386
> Ahg937924 jgi|Araly1|937924|scaffold_502115.1
Length=1066
Score = 333 bits (180), Expect = 2e-90
Identities = 648/865 (75%), Gaps = 67/865 (8%)
Strand=Plus/Plus
Query 341 TCCACGTGGCGATGACAC-TCGACGCCGCCTACATTCGTGGCTCAGTCGCCGCTG-TTCT 398
|||||||||| ||||| | | ||||| || ||| | ||||||||| | |||| || || |
Sbjct 178 TCCACGTGGCAATGAC-CTTAGACGCAGCTTACCTGCGTGGCTCAATGGCCG-TGATTTT 235
Query 399 CTCCGTCCTCCAACACTCTTCTTGTCCTGAAAACATTGTTTTCCACTTCGTCGCCTCTG- 457
|||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 236 CTCCGTCCTCCAACACTCTTCTTGTCCTCAAAACATTGTTTTCCACTTCGTCACTTCAAA 295
Query 458 -CTTCCGCCGACGCTTCTTCCTTACGAGCCACCATATCCTCCTCTTTCCCTTACCTTGAT 516
| | || || | || | || | | | | || | |||||||| ||| ||||
Sbjct 296 ACAAAC-CC-AC-CGACTACAAAACTA-CGTCGTT-TC-T--TCTTTCCCCTAC-TTGAA 346
Query 517 -TTCACCG-TCTACGTCTT-CAACGTCTCCTCCGTCTCTCG-CCTTATCTCCTCCTCTAT 572
||| | | | ||| ||| | |||| || || |||| || ||||||||| |||| ||
Sbjct 347 ATTC-CGGATATACC-CTTACGACGTAGCCGCCATCTC-CGGCCTTATCTCAACCTCCAT 403
Query 573 CCGCTCCGCACTAGACTGTCCTTTAAACTACGCAAGAAGCTACCTCGCCGATC-TCCTCC 631
|||||| || ||||||| ||| ||||||||||||||| |||||||||||| | | ||||
Sbjct 404 CCGCTCAGCCCTAGACTCTCCGCTAAACTACGCAAGAAACTACCTCGCCGA-CATTCTCC 462
Query 632 CTCCC-TGCGTC-CGCCGCGTCGTCTACCTAGACTCCGATCTGATCCTCGTCGACGACAT 689
| | | ||| || | | | ||||| ||||||||||| ||||| || ||||||||||||||
Sbjct 463 C-CACATGCCTCTCAC-GTGTCGTATACCTAGACTCAGATCTCATACTCGTCGACGACAT 520
Query 690 AGCAAAACTCGCCGCCAC--AGATCTCG-GCCGT-GATTCAGTCCTCGCCGCGCCGGAAT 745
| || ||| | |||| | ||| | || | | | | || | |||||||| || |
Sbjct 521 CTCCAAGCTCTTCTCCACTCACATCCCTAGC-GACG-T-C-GTTTTAGCCGCGCCTGAGT 576
Query 746 ACTGCAACGCCAATTTCACTTCATACTTCACATCA-ACCTTCTGGTCTAATCCGACTCTC 804
|||||||||| || ||||| | ||||| || || || || ||||| || || ||||
Sbjct 577 ACTGCAACGCAAACTTCACCACTTACTTTAC-TCCGACGTTTTGGTCAAACCCTTCTCTT 635
Query 805 TCTTT-A-AC-CT---TC----GCCGATCGGAAAGCATGCTACTTCAACACTGGAGTCAT 854
|| | | || || || |||| ||| | | || ||||||||||| ||||| ||
Sbjct 636 TCCATCACACTCTCCATCAACCGCCG-TCGTCCACCGTGTTACTTCAACACCGGAGTGAT 694
Query 855 GGTGATCGATCTTTCCCGGTGGCGCGAAGGCGCGTACACGTC-ACGCATCGA-AGAGTGG 912
||| ||||| || ||||||||||| | || ||| | | ||| | |||||||
Sbjct 695 GGTTATCGAGCTAAAGAAATGGCGCGAAGGAGATTATACGAGGAAG-ATC-ATAGAGTGG 752
Query 913 ATGGCGATGCAAAAGA-GAATGAGAATTTACGAGCTT-GGTTCGTTACCACCGTTTTTA- 969
|||| | | ||||| | | || ||||| |||||| || || || |||||||||||||||
Sbjct 753 ATGGAGTTACAAAA-ACGGATAAGAATCTACGAG-TTAGGCTCTTTACCACCGTTTTTAC 810
Query 970 TTGGTTTTTGCCGGTTTGATTAAA-CCGGTTA-ATCATCGGTGGAACCAACACGGTTTAG 1027
||| | || ||||| || | ||||| | |||| |||||||||||||| |||||||
Sbjct 811 TTG-TCTTCGCCGGAAACAT-AGCTCCGGT-AGATCACCGGTGGAACCAACATGGTTTAG 867
Query 1028 GAGGTGATAATTTCAGAGGACTGTGTAGAGATCTCCATCCTGGTCCGGTGAGTCTGTTGC 1087
|||| || |||||||||||||||||| ||||| | ||||| ||||| |||||| ||||||
Sbjct 868 GAGGAGACAATTTCAGAGGACTGTGTCGAGATTTGCATCCAGGTCCAGTGAGTTTGTTGC 927
Query 1088 ATTGGAGTGGGAAAGGTAAGCCATGGGCTA-GGCTT-GATGCTGGTCGGCCTTGTCCTTT 1145
|||||||||||||||| |||||||||| || || || || | |||||| ||||| || |
Sbjct 928 ATTGGAGTGGGAAAGGGAAGCCATGGG-TAAGG-TTAGACGATGGTCGACCTTGCCCGCT 985
Query 1146 AGACGCGCTTTGGGCTCCGTATGAT 1170
|| || ||||||| ||| ||||||
Sbjct 986 CGATGCACTTTGGGTTCCATATGAT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56792555295
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5