BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19310.1
Length=1045
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920875 jgi|Araly1|920875|scaffold_102156.1 1127 0.0
> Ahg920875 jgi|Araly1|920875|scaffold_102156.1
Length=723
Score = 1127 bits (610), Expect = 0.0
Identities = 682/717 (95%), Gaps = 4/717 (1%)
Strand=Plus/Plus
Query 155 CAGAGG-TTTTGTGGTGAATCATGTCTGATGTCCCTTCTTGTTCTAGCGGTAATGATACA 213
|||||| ||||| ||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 2 CAGAGGTTTTTG-GGTGAATCATGTCTGATGTTCCTTCTTGTTCTAGCGGCAATGATACA 60
Query 214 AACAACAATGATTCGAGTAACTTCGAATGTAACATCTGCTTAGACTTGGCTCAAGATCCT 273
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 AACAGCAATGATTCGAGTAACTTTGAATGTAACATCTGCTTAGACTTGGCTCAAGATCCT 120
Query 274 ATTGTCACTCTCTGTGGTCACTTGTTCTGTTGGCCTTGTTTATACAAATGGCTCCATCTC 333
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 ATTGTCACTCTCTGTGGTCACTTGTTCTGTTGGCCTTGCTTATACAAATGGCTCCATCTC 180
Query 334 CATTCTCAATCTAAGGACTGTCCTGTTTGCAAAGCCGTGATCGAAGAAGACAGATTGGTT 393
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CATTCTCAATCTAAGGAATGTCCGGTTTGCAAAGCCGTGATCGAAGAAGACAGATTGGTT 240
Query 394 CCTTTGTACGGTAGAGGTAAATCGTCTGCTGACCCTCGGTCCAAGTCCATTCCGGGTCTC 453
||||||||||||||||||||||||||||| |||||||| |||||||||||||| || |||
Sbjct 241 CCTTTGTACGGTAGAGGTAAATCGTCTGCCGACCCTCGATCCAAGTCCATTCCTGGACTC 300
Query 454 GAAGTGCCTAACCGTCCATCGGGACAGAGACCCGAAACTGCACAACCTCCTGATCCTAAC 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGTGCCTAACCGTCCATCGGGACAGAGACCCGAAACTGCACAACCTCCTGATCCTAAC 360
Query 514 CATGGTTTTGCTCATCATCATGGGTTTGGAGGGTTCATGGGAGGTTTTGCTGCTCCGATG 573
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 CATGGTTTTGCTCATCATCATGGGTTTGGTGGGTTCATGGGAGGTTTTGCTGCTCCGATG 420
Query 574 GCGAGTGCGCGGTTCGGGAATGTTACATTGTCTGCAGCGTTTGGCGGTTTGATTCCTTCT 633
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GCGAGTGCCCGGTTTGGGAATGTTACATTGTCTGCAGCGTTTGGCGGTTTGATTCCTTCG 480
Query 634 TTGTTCAACCTCCATTTCCATGGTTTCCCTGATGCAGCCATGTATGGAGCTGCTGCTTCT 693
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGTTCAACCTCCATTTCCATGGATTCCCTGATGCAGCCATGTATGGAGCTGCTGCTTCT 540
Query 694 GGCGGCTTCCCTCACGGTTTCTCGAATCCGTTTC-ATGGAGGACACTCGCATATGCATAG 752
||||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||||||
Sbjct 541 GGCGGCTTCCCTCACGGTTTCTCAAATCC-TTTCCATGGAGGACACTCACATATGCATAG 599
Query 753 TTACCAGCGGCACACGGGTCGACAAGGACAACAAGACCATCACTTGAGGATATTGTTACT 812
||||||||||||| | || |||||||||||||||||| ||||||||| | |||||| |||
Sbjct 600 TTACCAGCGGCACGCCGGACGACAAGGACAACAAGACAATCACTTGAAGCTATTGTCACT 659
Query 813 CATTGTTTTCGTCGTTGTTGTGTTTTCTCTCTTCTTGAGCTAGTGAGGAAATCGATT 869
|||||||| ||||| |||||||| || ||||||||||||||||||||||||| |||
Sbjct 660 TATTGTTTTTGTCGTCGTTGTGTTATCCCTCTTCTTGAGCTAGTGAGGAAATCAATT 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38885375340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5