BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19320.1
Length=864
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472154 jgi|Araly1|472154|fgenesh2_kg.1__2108__AT1G19320.1 1031 0.0
Ahg899887 jgi|Araly1|899887|Al_scaffold_0004_537 433 1e-120
> Ahg472154 jgi|Araly1|472154|fgenesh2_kg.1__2108__AT1G19320.1
Length=799
Score = 1031 bits (558), Expect = 0.0
Identities = 712/786 (91%), Gaps = 12/786 (2%)
Strand=Plus/Plus
Query 43 AACAATGGCGATTTTCTCCACATCACATCTTCTCTTCATCTCCTTCATCATAGCCACATG 102
|||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||
Sbjct 2 AACAATGGCGATTTTCTCCAAATTACATCTTCTCTTTTTCTCCTTCATCATAGCCACATG 61
Query 103 TACAATTTCTGTCTCCGGTA-CAACCTTCACCTTAACAAACCATTGCGGCTCCACAATCT 161
|| ||||||||||||||| | | | |||||||||||||||||| ||| ||||||| ||||
Sbjct 62 TATAATTTCTGTCTCCGGCACCGA-CTTCACCTTAACAAACCACTGCAGCTCCACCATCT 120
Query 162 GGCCTGGAATCCTCACCGCAAACGGCGCA-CAACTCGGCGACGGCGGATTTGCCTTAGCT 220
|||||||||||||||||||||||||| || ||| ||||||||||||| |||||||||||
Sbjct 121 GGCCTGGAATCCTCACCGCAAACGGCACACCAA-TCGGCGACGGCGGTTTTGCCTTAGCC 179
Query 221 TCAGGATCTTCCGTAACCTTCACCGTTTCTCCAGGTTGGTCCGGTCGATTTTGGGCTCGA 280
|||| |||||||| ||||| ||||||||||| || |||||||||||||| |||| | ||
Sbjct 180 GCAGGCTCTTCCGTCACCTTAACCGTTTCTCCTGGCTGGTCCGGTCGATTCTGGGGTAGA 239
Query 281 ACGTATTGTAACTTCGACGCCTCAGGCTCAGGTAAATGCGGTACCGGGGACTGCGGCAGC 340
||| || ||||||||||| || || || || |||||| ||||| ||||||||| |
Sbjct 240 ACGGGCTGCAACTTCGACGCATCCGGTTCCGGAAAATGCACCACCGGAGACTGCGGCGGT 299
Query 341 AAGTTAAAATGCGCCGGCGCAGGAGGAGCTCCACCAGCCACACTCGCCGAATTCACAATC 400
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 AAGTTAAAATGCGCCGGCGCAGGAGGAGCTCCACCAGCCACACTCGCAGAATTCACAATC 359
Query 401 GGCTCCTCCGGAAAGAAAAACGCCGTGCAAGATTTTTACGACGTGAGCCTCGTAGATGGT 460
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| || |||
Sbjct 360 GGCTCATCCGGAAAGAAAAACGCAGTGCAAGATTTCTACGACGTGAGCCTCGTCGACGGT 419
Query 461 TATAACGTTCAGATGAAAATCACACCGCAAGGTGGCTCAGGGGATTGTAAAACCGCGGGA 520
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 420 TACAACGTTCAGATGAAAATCACACCGCAAGGTGGCTCAGGCAATTGTCAAACCGCGGGA 479
Query 521 TGCGTTTCGGACGTGAACGCGATTTGTCCAAAAGAGCTACAAGTTACGGGC-CCATCGGG 579
|||||||||||||||||||||||||||||||| ||||||| ||||||| | || ||||
Sbjct 480 TGCGTTTCGGACGTGAACGCGATTTGTCCAAACGAGCTACGCGTTACGGACGCCG-CGGG 538
Query 580 TGTTGCAGCGTGTAAGAGTGCTTGTGAGGCTTTTAACAAGCCGGAGTATTGTTGCACCGG 639
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 539 TGTTGTGGCGTGTAAGAGTGCTTGTGAGGCTTTTAATAAGCCGGAGTATTGTTGCACCGG 598
Query 640 CGCGTATAGTACACCGGCGACTTGTCCGCCCACGAATTACTCGAAGATATTTAAACAAGC 699
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 599 CGCGTATAGTACACCGGCTACTTGTCCGCCGACGAATTACTCGAAGATATTTAAACAAGC 658
Query 700 TTGTCCGAGTGCGTATAGCTATGCATACGATGATGCTTCCAGTACTTTTACTTGTACTAA 759
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 659 TTGTCCAAGTGCGTATAGCTATGCATACGATGATGCTTCGAGTACTTTTACTTGTACTAA 718
Query 760 TGCTAATTATGAGATCAGTTTCTGTTCTTAGGCAAAA-ATCGCCTttatta-ttcattaa 817
||||||||||| ||||||||||||||||||| || || | |||||||||| || ||||
Sbjct 719 TGCTAATTATGTGATCAGTTTCTGTTCTTAGACATAACA--GCCTTTATTAATT-ATTA- 774
Query 818 ttatta 823
||||||
Sbjct 775 TTATTA 780
> Ahg899887 jgi|Araly1|899887|Al_scaffold_0004_537
Length=792
Score = 433 bits (234), Expect = 1e-120
Identities = 356/414 (86%), Gaps = 11/414 (3%)
Strand=Plus/Plus
Query 47 ATGGCGATTTTCTCCACATCACATCTTCTCTTCATCTCCTTCATCATAGCCACATGTACA 106
||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 ATGACGATTTTCTCCACATTACATCTTCTCTTCTTCTCCTTCATCATAGCCACATGTACA 60
Query 107 ATTTC--T-GTCTCCGGTACAACCTTCACCTTAACAAACCATTGCGGCTCCACAATCTGG 163
||||| | |||||||| || |||||| ||| | |||| ||| ||| ||| |||||
Sbjct 61 ATTTCCATTGTCTCCGGCACCGTCTTCACTTTATCGAACCGCTGCAGCTTCACCGTCTGG 120
Query 164 CCTGGAATCCTCACCGCAAA--CGGCGCAC-AACTCGGCGACGGCGGATTTGCCTTAGCT 220
|| |||||||| |||||||| | | || || ||||||||||||||||||||||| ||
Sbjct 121 CCCGGAATCCTAACCGCAAAATCAA-G-ACTAA-TCGGCGACGGCGGATTTGCCTTACCT 177
Query 221 TCAGGATCTTCCGT-AACCTTCACCGTTTCTCCAGGTTGGTCCGGTCGATTTTGGGCTCG 279
||||||||||| || ||| || ||||||||||||||||||||||||||||| |||| |||
Sbjct 178 TCAGGATCTTCTGTTAAC-TTAACCGTTTCTCCAGGTTGGTCCGGTCGATTCTGGGGTCG 236
Query 280 AACGTATTGTAACTTCGACGCCTCAGGCTCAGGTAAATGCGGTACCGGGGACTGCGGCAG 339
|||| ||| |||||||||||||| || || | |||||| ||||| ||||||||| |
Sbjct 237 AACGGGTTGCAACTTCGACGCCTCGGGTTCCGAAAAATGCACCACCGGAGACTGCGGCGG 296
Query 340 CAAGTTAAAATGCGCCGGCGCAGGAGGAGCTCCACCAGCCACACTCGCCGAATTCACAAT 399
||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||
Sbjct 297 CAAGTTAAAATGCGCCGGCGCAGAAGGAGCTCCACCAACCACACTAGCCGAATTCAGAAT 356
Query 400 CGGCTCCTCCGGAAAGAAAAACGCCGTGCAAGATTTTTACGACGTGAGCCTCGT 453
|||||||||||||||| || ||||||| ||||||| |||||||||||||||||
Sbjct 357 CGGCTCCTCCGGAAAGGAATACGCCGTACAAGATTCCTACGACGTGAGCCTCGT 410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31985127363
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5