BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19330.3
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472155 jgi|Araly1|472155|fgenesh2_kg.1__2109__AT1G19330.1 1755 0.0
Ahg476644 jgi|Araly1|476644|fgenesh2_kg.2__1774__AT1G75060.2 603 1e-171
> Ahg472155 jgi|Araly1|472155|fgenesh2_kg.1__2109__AT1G19330.1
Length=1188
Score = 1755 bits (950), Expect = 0.0
Identities = 1125/1205 (93%), Gaps = 30/1205 (2%)
Strand=Plus/Plus
Query 28 tctcttcttctctctctgc-ttcttcttGTGGGACAAACCCTAATTATTTTACTTCGATA 86
|||| |||||||||||| | ||||||||||||||||||||||||||||||||| |||||
Sbjct 6 TCTC-TCTTCTCTCTCTACTTTCTTCTTGTGGGACAAACCCTAATTATTTTACATCGATC 64
Query 87 TCTCTCCACTTTTCCCGCTCAATCATCTGATCTTTCCCTCTCTCAGCAATGCATGATCTT 146
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 65 TCTCTCCACTTTTCCCGCTCAATCATCTGATCTTTCCCTCTCTTAGCAATGCATGATCTT 124
Query 147 CGATTTTCTATCAGTGTTCAAAGCTGaaaaaaaTCGAACTGGGTCTGTTGATTTCTTCAG 206
||||||| |||||||||||| ||||| |||| ||||| ||||||||||| |||||||
Sbjct 125 CGATTTTGTATCAGTGTTCACAGCTG-AAAACTTCGAAGTGGGTCTGTTGGTTTCTTC-- 181
Query 207 GTCTAAAATCAGATTAGATTagagaagaagaagaagaaTGCTGGAAGCTGTAGATAGCTC 266
| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 G----------GATTAGATTAGAGAAGAAGAAGAAGAATGCTGGAAGCTGTAGATAGCTC 231
Query 267 AGGAGTGGTGAATGGAGGATTCCCGCAGATTCAGAGCTTTTACGGCGATTGCAGTAGTGA 326
||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 232 AGGAGTGGTCAATGGAGGATTCCCACAGATACAGAGCTTTTACGGCGATTGCAGTAGTGA 291
Query 327 AGAAGAGTTATCGGTATTGCCACGTCATACAAAAGTGGTGGTCACCGGAAACAACCGGAC 386
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 292 AGAAGAGTTATCAGTTTTGCCACGTCATACAAAAGTGGTGGTCACCGGAAACAACCGTAC 351
Query 387 GAAATCGGTGCTTGTTGGTCTTCAAGGTGTTGTCAAAAAAGCTGTCGGTCTCGGTGGTTG 446
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 352 GAAATCGGTGCTTGTTGGTCTTCAAGGTGTTGTTAAAAAAGCTGTCGGTCTCGGTGGTTG 411
Query 447 GCATTGGCTGGT---TTTGACAAATGGAATAGAAGTAAAGTTGCAGAGGAATGCGCTTAG 503
|||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 412 GCATTGGCTGGTAAAGTTGACAAATGGCATAGAAGTAAAATTGCAGAGGAATGCGCTTAG 471
Query 504 TGTCCTTGAACCTCCTACTGGAAACGAAGAAGACGATGATCTTGATTTCGAAAACACACA 563
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 TGTCCTTGAACATCCTACTGGAAACGAAGAAGACGATGATCTTGATTTCGAAAACACACA 531
Query 564 GAGGAATGGCTCTGATATGATTGTTTCTTTTCCAGCATCTGAGGACACACTGAAGCCTCA 623
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 532 GAGGAATGGCTCCGATATGATTGTTTCTTTTCCAGCATCTGAGGACACGCTGAAGCCTCA 591
Query 624 TAAGTCGAAGCTAAGAGGGCAGAGATCATCTCGGTCATCTCACAAGACGATGAGCAGGTC 683
||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||| ||
Sbjct 592 TAAGTCGAAGCAAAGAGGGCAGAGATCATCGCGGTCATCTCACAAGACAATGAGCAGATC 651
Query 684 TCTATCATCTGACTCGCAATCAAAAAGTTCGGGTTTTACTCCTCC-TGAAAACATGCAGA 742
|||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||
Sbjct 652 TCTATCATCTGACTCGCAATCAAAAAGTTCGGGTTTTACTCC-CCGTGAAAACAT---GA 707
Query 743 AGGTTGATCTTAGCAAATTGGAAATGCCTGCTTTACTGAATTATTGGCGACATTTTAACC 802
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 708 AGGTTGATCTAAGCAAATTGGAAATGCCCGCTTTACTGAATTATTGGCGACATTTTAACC 767
Query 803 TTGTGGATGCAATTCCAAATCCATCAAAGGAGCAACTAATTGACATTGTTCAAAGGCACT 862
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 768 TTGTGGATGCAATTCCTAATCCATCAAAGGAGCAACTAATTGACATTGTTCAAAGGCACT 827
Query 863 TCATGTCTCAGCAAATGGATGAGCTTCAGGTTATTGTGGGGTTTGTCCAAGCTGCAAAGA 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TCATGTCTCAGCAAATGGATGAGCTTCAGGTTATTGTGGGGTTTGTCCAAGCTGCAAAGA 887
Query 923 GAATGAAGAAGGCTTGCAAGTTTCAATCCAAAGAATCCAGAAACACTGATCTTAACTGCA 982
||||||||||||| |||||||| ||||| |||||| ||||||||||||||||||||||||
Sbjct 888 GAATGAAGAAGGCATGCAAGTTGCAATCGAAAGAAGCCAGAAACACTGATCTTAACTGCA 947
Query 983 TCAGCTAAAGAA-AAGCCCTGACTCTTAACAAATCCTGTATGTACGGTACATCAACTTGT 1041
||||||||| || ||||||||||| |||||||||| ||||||||||||||| | ||||||
Sbjct 948 TCAGCTAAAAAAGAAGCCCTGACTTTTAACAAATCATGTATGTACGGTACACCGACTTGT 1007
Query 1042 TTAACCATTTGTGGCTTGCTAAGTTT-AGTTCTTCTAGTGATGTTTGGCTAAAGGGTAGA 1100
||||||||| |||||||||||||||| |||| |||||| |||||||||||||||||||||
Sbjct 1008 TTAACCATTCGTGGCTTGCTAAGTTTTAGTTATTCTAGAGATGTTTGGCTAAAGGGTAGA 1067
Query 1101 TGTTGTTTCTTCTTTGCTTCTGTTGTTTAGCCAATGTAAGTACCATCaaaaaaaCCAAAT 1160
|||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||||
Sbjct 1068 TGTTGTTTCTTCTTA-CTTCTGTTGTTTAGCCG-TGTAAGTACCATCAAGAAA-CCAAAT 1124
Query 1161 AACTCTCTAAAGCTCCCTATTGGAAACTATCTTGT-CTGATACGATCTGGAGTGACCGGT 1219
||||||||||||| ||||||||||||||||| || |||||||||||||||| || |||
Sbjct 1125 GACTCTCTAAAGCTTCCTATTGGAAACTATCT-GTTCTGATACGATCTGGAGAGATGGGT 1183
Query 1220 ATGTT 1224
|||||
Sbjct 1184 ATGTT 1188
> Ahg476644 jgi|Araly1|476644|fgenesh2_kg.2__1774__AT1G75060.2
Length=1084
Score = 603 bits (326), Expect = 1e-171
Identities = 598/725 (82%), Gaps = 36/725 (5%)
Strand=Plus/Plus
Query 280 GGAGGATTCCCGCAGATTCAGAGCTT--TTACGGCGATTGCAGTAGTGAAGAAGAGTTAT 337
||||||||| | ||| | || || || || ||||||||||||||| |||||||| ||||
Sbjct 192 GGAGGATTCTCTCAGCTACAAAG-TTGCTT-CGGCGATTGCAGTAGCGAAGAAGAATTAT 249
Query 338 CGGTATTGCCACGTCATACAAAAGTGGTGGTCACCGGAAACAACCGGACGAAATCGGTGC 397
| || |||||||||||||| ||||| | || |||||||||||||| || ||||| || |
Sbjct 250 CTGTGTTGCCACGTCATACCAAAGTCATCGTTACCGGAAACAACCGTACCAAATCCGTAC 309
Query 398 TTGTTGGTCTTCAAGGTGTTGTCAAAAAAGCTGTCGGTCTCGGTGGTTGGCATTGGCTGG 457
| || ||||||||||| || || |||||||| ||||| ||||||||||||||||||||||
Sbjct 310 TCGTCGGTCTTCAAGGCGTCGTTAAAAAAGCCGTCGGACTCGGTGGTTGGCATTGGCTGG 369
Query 458 TTTTGACAAATGGAATAGAAGTAAAGTTGCAGAGGAATGCGCTTAGTGTCCTTGAACCTC 517
|| |||||||||| |||||||| |||||||||||||||||||||||||| ||||||| ||
Sbjct 370 TTCTGACAAATGGCATAGAAGTGAAGTTGCAGAGGAATGCGCTTAGTGTTCTTGAACATC 429
Query 518 CTACT-GGAAACGAAGAAGACGATGATCTTGATTTCGAAAACAC-ACAGAGGAATGGCTC 575
||| | || |||||||||||| |||||||||| |||| | || ||| | | | |
Sbjct 430 CTA-TAGGGAACGAAGAAGACAATGATCTTGAAGTCGACCATACTACACA-G--T-G--- 481
Query 576 TGATATGATTGTTTC-TTTTCCAGCATCTGAGGACACACTGAAGCCTCATAAGTCGAAGC 634
|| || || || | | | | || |||||||||| |||||||||||||||||||||
Sbjct 482 -GA-ATAATCCTTCCGATAT-GA-CAACTGAGGACACTTTGAAGCCTCATAAGTCGAAGC 537
Query 635 TA-AGAGGGCAGAGATCATCTCGGTCATCTCACAAGACGATGAGCAGGTCTCTATCATCT 693
| ||||| || |||||||| |||| |||||| ||| | || ||||| | | || | |
Sbjct 538 -AGAGAGGACACAGATCATCGCGGTTATCTCAAAAGGCTTTGTGCAGGGCAGTTTCTTGT 596
Query 694 GACTCGCAATCAAAAAGTTCGGGTTTTACTCCTC-C-TGAAAACATGCAGAAGGTTGATC 751
||||| || ||||||| ||| || ||||||||| | || ||||| |||||||||||
Sbjct 597 GACTCACACTCAAAAAACTCGAGTATTACTCCTCGCATG--AACAT---GAAGGTTGATC 651
Query 752 TTAGCAAATTGGAAATGCCTGCTTTACTGA-ATTATTGGCGACATTTTAACCTTGTGGAT 810
||| ||| ||||| ||| |||| ||||||| | |||||||||||||||||||| ||||||
Sbjct 652 TTACCAAGTTGGATATGGCTGCATTACTGAGA-TATTGGCGACATTTTAACCTCGTGGAT 710
Query 811 GCAATTCCAAATCCATCAAAGGAGCAACTAATTGACATTGTTCAAAGGCACTTCATGTCT 870
|| ||||||||||| ||||||||||||| ||||||||| |||| || ||||||||||||
Sbjct 711 GCTCTTCCAAATCCAACAAAGGAGCAACTGATTGACATTATTCAGAGACACTTCATGTCT 770
Query 871 CAGCAAATGGATGAGCTTCAGGTTATTGTGGGGTTTGTCCAAGCTGCAA-AGAGAATGAA 929
|||||||||||||||||||||||||| ||||| || || || ||||||| || |||||||
Sbjct 771 CAGCAAATGGATGAGCTTCAGGTTATCGTGGGATTCGTTCAGGCTGCAACAG-GAATGAA 829
Query 930 GAAGGCTTGC-AAGTTTCAATCCAAA-GAATCCAGAAACACTGATCTT-AACTGCATCAG 986
|||||||||| |||| || ||||| ||| ||||||||||||||||| |||||||||||
Sbjct 830 GAAGGCTTGCCAAGTGG-AAGCCAAAAGAAGCCAGAAACACTGATCTTTAACTGCATCAG 888
Query 987 CTAAA 991
|||||
Sbjct 889 CTAAA 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5