BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19340.1
Length=1610
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472157 jgi|Araly1|472157|fgenesh2_kg.1__2111__AT1G19340.1 1973 0.0
> Ahg472157 jgi|Araly1|472157|fgenesh2_kg.1__2111__AT1G19340.1
Length=1490
Score = 1973 bits (1068), Expect = 0.0
Identities = 1268/1364 (93%), Gaps = 16/1364 (1%)
Strand=Plus/Plus
Query 47 AATGGCGAAAACTGATAAGCTAGCTCAATTCCTTGATTCTGGTATCTACGAATCCGACGA 106
||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||
Sbjct 31 AATGGCGAAAACTGATAAGCTAGCTCAATTCCTTGATTCGGGTATCCATGAATCCGACG- 89
Query 107 ATT-CAATTGGTTCTTCTTAGACACAGTTCGTATCACCAACCGTTCATATACCCGATTTA 165
||| ||||||||||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 90 ATTCCAATTGGTTCTTCTTAGACCCGGTTCGTATCACCAATCGTTCATATACCCGATTTA 149
Query 166 AGGTTTCACCTTCTGCTTACTACTCTCGTTTCTTCAATTCGAAGCAACTCAATCAACACT 225
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
Sbjct 150 GGGTTTCACCTTCTGCTTATTACTCTCGTTTCTTCAATTCCAAGCAACTCAATCAACAAT 209
Query 226 CTAGCGAGTCTAATCCGAAAAAGCGAAAACGGAAGCAGAAAAACTCTAGCTTTCACCTTC 285
| ||||| |||||||||| |||||||||||||||||||||| || |||||||||||||||
Sbjct 210 CCAGCGACTCTAATCCGAGAAAGCGAAAACGGAAGCAGAAAGACCCTAGCTTTCACCTTC 269
Query 286 CTAGTGTAGGAGAGCAAGCTTCGAATCTTCGTCATCAGGAAGCGAGGCTGTTCTTATCGA 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 270 CTAGTGTAGGAGAGCAAGCTTCGAATCTTCGTCATCAGGAAGCGAGGCTGTTCTTATCGA 329
Query 346 AAGCCCATGAATCTTTTCTAAAGGAAATTGAGTTGTTGAGTTTAACGAAAGGTCTAAGtg 405
||||||||||||||||| ||||||| | |||||| ||| ||||||||||||||| |
Sbjct 330 AAGCCCATGAATCTTTTTTAAAGGACGTCGAGTTGGTGAATTTAACGAAAGGTCT-A--- 385
Query 406 atgataatgatgatgatgatTCTAGTTTGTTGAACAAGTGTTGTGACGATGAAGTCTCTT 465
| | |||||||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 386 A-G----TGATGATGAT--TT-TAGTTTGTTGAACAAGTGTTGTGACGATGAACTCTCTT 437
Query 466 TTATTGAGCTTGGAGGAGTGTGGCAAGCTCCTTTCTATGAGATAACACTGAGTTTTAATC 525
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 438 TTATTGAGCTTGGAGGAGTGTGGCAAGCTCCTTTCTATGAGATAACACTGAATTTTAATC 497
Query 526 TACATTGCGACAATGAAGGTGAGAGTTGTAATGAACAGAGAGTGTTTCAAGTGTTCAATA 585
|| ||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 498 TATGTTGCGACAATGAAGGCGAGACTTGCAATGAACAGAGAGTGTTTCAAGTGTTCAATA 557
Query 586 ACCTAGTAGTGAATGAGATTGGAGAAGAAGTTGAAGCTGAGTTTTCCAACCGGAGATATA 645
||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 558 ACCTAGTAGTGAACGAGACTGGAGAAGAAGTGGAAGCTGAGTTTTCCAACCGGAGATATA 617
Query 646 TAATGCCCAGAAACAGTTGCTTCTACATGTCTGATTTACAT-CACATCCGAAACCTCGTT 704
||||||| ||||| ||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 618 TAATGCCTAGAAAGAGTTGCTTCTACATGTCTGATTTAC-TGCATATCCGAAACCTCGTT 676
Query 705 CCTGCTAAATCTGAAGAAGGCTACAATCTTATAGTTATTGATCCGCCTTGGGAAAATGCA 764
|||| ||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 677 CCTGGTAAGTCTGAAGAAGGCTTCAATCTTATAGTTATTGATCCACCTTGGGAAAATGCA 736
Query 765 AGTGCTCATCAGAAATCAAAGTATCCTACTTTACCGAACCAATACTTCTTATCTCTTCCG 824
|| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||
Sbjct 737 AGCGCTCATCAGAAATCAAAGTATCCTACTTTACCAAACCGATACTTCTTATCTCTCCCG 796
Query 825 ATCAAGCAGCTTGCTCATGCTGAAGGAGCTCTCGTGGCTTTGTGGGTGACAAATAGAGAG 884
|||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||
Sbjct 797 ATCAAGCAGCTTGCTCATGCTGAAGGAGCTCTTGTGGCTTTATGGGTGACCAATAGAGAG 856
Query 885 AAATTACTAAGTTTTGTTGAGAAAGAGCTATTCCCTGCGTGGGGAATTAAGTATGTAGCT 944
|||||||| |||||||||||||||||| ||||||||||||||||| | ||||||||||||
Sbjct 857 AAATTACTTAGTTTTGTTGAGAAAGAGTTATTCCCTGCGTGGGGAGTCAAGTATGTAGCT 916
Query 945 ACAATGTATTGGTTAAAGGTGAAACCGGATGGTACACTGATTTGCGACCTGGACCTGGTC 1004
|||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 917 ACAATGTATTGGTTGAAGGTGAAACCAGATGGTACACTGATTTGCGATCTGGACCTGGTC 976
Query 1005 CATCATAAACCTTATGAGTACCTTCTACTAGGCTACCATTTTACCGAACTTGCAGGATCA 1064
||||||||||||||||||||||||||||||||||||| || ||||||| || ||||||||
Sbjct 977 CATCATAAACCTTATGAGTACCTTCTACTAGGCTACCGTTATACCGAATTTCCAGGATCA 1036
Query 1065 GAAAAGAGGTCAGATTTTAAACTCTTGGACAAGAACCAGATAATCATGAGCATCCCTGGT 1124
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GAACATAGGTCAGATTTTAAACTCTTGGACAAGAACCAGATAATCATGAGCATCCCTGGA 1096
Query 1125 GATTTTTCGAGGAAACCCCCAATTGGAGATATACTACTGAAACACACTCCCGGGTCTCAA 1184
|||||||| |||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 1097 GATTTTTCAAGGAAACCCCCAATTGGAGAGATACTAATGAAACACACTCCCGGGTCTCAA 1156
Query 1185 CCTGCTCGGTGCCTTGAGCTATTTGCGAGGGAAATGGCTGCCGGATGGACCTCTTGGGGA 1244
| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1157 ACGGCTCGGTGCCTTGAGCTATTTGCTAGGGAAATGGCTACCGGATGGACCTCTTGGGGA 1216
Query 1245 AACGAACCGCTTCACTTTCAGGACTCGAGATACTTTTTGAAAGTTTAGTGGGCGCATTCC 1304
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1217 AATGAACCGCTTCACTTTCAGGACTCGAGATACTTTTTGAAAGATTAGTGGGCGCATTCC 1276
Query 1305 CTAGGGTGTAACCAAGAAAAAGGCTGGCTTGGGCCCTCATGATCGTTTTTCTCTATGACT 1364
||||| |||| ||||| ||||| |||||||||||||||||||| |||||| ||| |||||
Sbjct 1277 CTAGGTTGTAGCCAAGGAAAAGACTGGCTTGGGCCCTCATGATTGTTTTTTTCTGTGACT 1336
Query 1365 CATTCTCAAGCTGGGGACAGTTAGGAGAGAACCCTTGGAAAGAA 1408
|||| |||||||| |||||| |||||||||||||||||| |||
Sbjct 1337 CATTGTCAAGCTGAAGACAGTGAGGAGAGAACCCTTGGAAGGAA 1380
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60334948080
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5