BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19350.3
Length=1465
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472158 jgi|Araly1|472158|fgenesh2_kg.1__2112__AT1G19350.4 1997 0.0
Ahg476647 jgi|Araly1|476647|fgenesh2_kg.2__1777__AT1G75080.2 928 0.0
> Ahg472158 jgi|Araly1|472158|fgenesh2_kg.1__2112__AT1G19350.4
Length=1402
Score = 1997 bits (1081), Expect = 0.0
Identities = 1207/1266 (95%), Gaps = 15/1266 (1%)
Strand=Plus/Plus
Query 205 GAAGAAGATGACGTCTGACGGAGCAACGTCGACGTCAGCTGCAGCTGCAGCAGCAGCGAT 264
||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 147 GAAGAAGATGACGTCTGACGGAGCAACGTCGACGTCA---GCAGCAGCAGCTGCAGCGAT 203
Query 265 GGCGACgaggaggaaaccgtcgtggagagagagggagaacaatcggagaagagagcggcg 324
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 204 GGCGACGAGGAGGAAACCGTCGTGGAGAGAGAGGGAGAACAATCGGAGAAGAGAGCGGAG 263
Query 325 gagaagagCTGTTGCGGCGAAGATTTATACTGGTCTTAGAGCTCAAGGTAACTACAATCT 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 GAGAAGAGCTGTTGCGGCGAAGATTTATACTGGTCTTAGAGCTCAAGGTAACTACAATCT 323
Query 385 TCCAAAACATTGTGACAACAATGAGGTTCTTAAGGCTCTTTGTTCTGAAGCTGGTTGGGT 444
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 324 TCCAAAACATTGTGACAACAATGAGGTTCTCAAGGCTCTTTGTTCTGAAGCTGGTTGGGT 383
Query 445 TGTTGAAGAAGACGGAACTACTTATCGCAAGGGACACAAGCCTCTACCTGGTGACATGGC 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TGTTGAAGAAGACGGAACTACTTATCGCAAGGGACACAAGCCTCTACCTGGTGACATGGC 443
Query 505 TGGATCATCTTCTCGAGCAACTCCTTACTCTTCCCATAACCAAAGTCCTCTTTCTTCCAC 564
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 444 TGGATCATCTTCTCGAGCAACTCCTTACTCTTCCCATAACCAAAGTCCTCTGTCTTCCAC 503
Query 565 TTTTGATAGCCCCATCTTATCTTACCAAGTCAGTCCTTCCTCTTCTTCATTCCCGAGTCC 624
|||||||||||||||| ||||||||||||||||||| || |||||||| |||||||||||
Sbjct 504 TTTTGATAGCCCCATCCTATCTTACCAAGTCAGTCCCTCGTCTTCTTCGTTCCCGAGTCC 563
Query 625 TTCTCGAGTTGGTGATCCACACAATATCTCCACAATCTTCCCTTTCCTCAGGAATGGTGG 684
|||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 564 TTCTCGTGTTGGCGATCCACACAACATCTCCACAATCTTCCCTTTCCTCAGGAATGGCGG 623
Query 685 TATTCCTTCATCGCTTCCTCCACTTAGAATCTCAAACAGTGCTCCTGTCACTCCACCAGT 744
|||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 624 GATTCCTTCATCGCTTCCTCCGCTTAGAATCTCAAACAGTGCTCCAGTCACTCCTCCAGT 683
Query 745 GTCATCCCCAACTTCTAGAAACCCCAAACCATTGCCTACTTGGGAATCTTTTACCAAACA 804
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 684 CTCATCTCCAAATTCTAGAAACCCCAAACCATTGCCTACTTGGGAATCTTTTACCAAACA 743
Query 805 ATCCATGTCCATGGCTGCTAAACAGTCAATGACTTCTTTGAACTACCCGTTTTATGCGGT 864
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 744 ATCCATGTCCATGGCTGCTAAACAATCAATGACTTCTTTGAACTATCCGTTTTATGCGGT 803
Query 865 GTCTGCACCTGCCAGTCCTACTCATCATCGCCAGTTCCATGCTCCGGCTACTATACCTGA 924
||||||||||| ||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 804 TTCTGCACCTGCTAGTCCCACCCATCATCGCCAGTTCCATGCCCCGGCTACTATACCTGA 863
Query 925 ATGTGATGAGTCTGACTCTTCCACTGTTGATTCTGGTCATTGGATAAGCTTTCAAAAGTT 984
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 864 ATGTGATGAGTCTGACTCTTCAACTGTTGATTCTGGTCATTGGATAAGCTTTCAGAAGTT 923
Query 985 TGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCGCCTACCTTCAATCTCGT 1044
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 924 TGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTACTTTCAATCTCGT 983
Query 1045 GAAACCTGCACCACAGCAATTGTCTCCAAACACAGCAGCAATCCAAGAGATTGGTCAAAG 1104
|||||||||||| |||||||| ||||||||||| ||||| | ||||||||||||||||||
Sbjct 984 GAAACCTGCACCTCAGCAATTATCTCCAAACACTGCAGCGACCCAAGAGATTGGTCAAAG 1043
Query 1105 CTCCGAGTTTAAGTTTGAGAACAGCCAAGTTAAGCCATGGGAAGGGGAGAGGATCCATGA 1164
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1044 CTCCGAGTTTAAGTTTGAGAACAGCCAAGTTAAACCATGGGAAGGGGAGAGGATTCATGA 1103
Query 1165 TGTGGCTATGGAGGATCTAGAGCTCACGCTTGGAAATGGTAAA-GCTCATAGTTGAGATG 1223
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1104 TGTGGCTATGGAGGATCTAGAGCTCACGCTTGGAAATGGTAAAAGCTCATAGTTGAGATG 1163
Query 1224 AAGTA-TACATGAACCTGTTATGTCATGTCG--G-AAGGAAGGATTGGAGAATGAGAATT 1279
||||| | || ||||| |||||||||||||| | ||||||||||||||| | ||
Sbjct 1164 AAGTACT-CAGGAACCCGTTATGTCATGTCGTCGGAAGGAAGGATTGGAG--TC----TT 1216
Query 1280 AGTGTGTTGTTCATTCAGTTCATGGTTTTGGTTCTTGTTCTAGAATCGATATTCATTGTA 1339
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1217 AGTTTGTTGTTCATTCAGTTCATGGTTTTGGTTCTTGTTCTAGAATCGATATTCATTGTA 1276
Query 1340 CCAGTGAGTTTGTTTCACAACGCATTATTTGTAGATAGAATGTTTAAGATGTATGTTTCT 1399
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1277 CCAGTGAGTTTGTTTCATAACGCATTATTTGTAGATAGAATGTTTAAGATGTATGTTTCT 1336
Query 1400 ATTATCATTCCTTTTAGGTCTTGAAAACATTACAAATATATTACATGATTAAGTGGCTTG 1459
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1337 ATTATCATTCCTTTTAGGTCTTGAAAACATTACAAATATATTACATTATTAAGTGGCTTG 1396
Query 1460 AAATGT 1465
||||||
Sbjct 1397 AAATGT 1402
> Ahg476647 jgi|Araly1|476647|fgenesh2_kg.2__1777__AT1G75080.2
Length=1526
Score = 928 bits (502), Expect = 0.0
Identities = 860/1029 (84%), Gaps = 40/1029 (4%)
Strand=Plus/Plus
Query 211 GATGACGTCTGACGGAGCAACGTCGACGT---CAGCTGCAGCTGCAGCAGCAGCGATG-- 265
||||||||| || ||||| |||||||| | ||||||| ||||| || || || | |
Sbjct 173 GATGACGTCGGATGGAGCTACGTCGACATCAGCAGCTGCGGCTGCGGCGGCGGC-A-GCA 230
Query 266 GCGACgaggaggaaaccgtcgtggagagagagggagaacaatcggagaagagagcggcgg 325
||| |||||||||| ||||||||||| || |||||||| |||||||| |||||| | |||
Sbjct 231 GCGGCGAGGAGGAAGCCGTCGTGGAGGGAAAGGGAGAATAATCGGAGGAGAGAGAGACGG 290
Query 326 agaagagCTGTTGCGGCGAAGATTTATACTGGTCTTAGAGCTCAAGGTAACTACAATCTT 385
||||||||||| || |||||||| |||||||| ||||||||||||||| | || ||| ||
Sbjct 291 AGAAGAGCTGTAGCTGCGAAGATATATACTGGGCTTAGAGCTCAAGGTGATTATAAT-TT 349
Query 386 -CCAAAACATTGTGACAACAATGAGGTTCTTAAGGCTCTTTGT-TCTGAAGCTGGTTGGG 443
|| ||||||||||| || ||||| || || || ||||||||| | ||||||||||||||
Sbjct 350 GCCTAAACATTGTGATAATAATGAAGTCCTCAAAGCTCTTTGTGT-TGAAGCTGGTTGGG 408
Query 444 TTGTTGAAGAAGACGGAACTACTTATCGCAAGGGACACAAGCCTCTACCTGGTGACATGG 503
||||||||||||| || |||||||||||||||||| ||||||| |||||||||| ||||
Sbjct 409 TTGTTGAAGAAGATGGTACTACTTATCGCAAGGGATGCAAGCCTTTACCTGGTGAGATGG 468
Query 504 CT-GGATCATCTTCTCGAGCAACTCCTTACTCTTCCCATAACCAAAGTCCTCTTTCTTCC 562
|| ||| | || ||||||| ||||| ||||| || || ||||| || |||||||| ||
Sbjct 469 CTGGGA-CTTCATCTCGAGTTACTCCATACTCATCACAGAACCAGAGCCCTCTTTCATCG 527
Query 563 ACTTTTGATAGCCCCATCTTATCTTACCAAGTCAGTCCTTCCTCTTCTTCATTCCCGAGT 622
| ||| | ||||||||| ||||||||||| || || || ||||| || |||||||||
Sbjct 528 GCCTTTCAAAGCCCCATCCCGTCTTACCAAGTTAGCCCGTCTTCTTCGTCTTTCCCGAGT 587
Query 623 CCTTCTCGAGTTGGTGATCC--A-CACAATATCT-C-C-ACAATCTTCCCTTTCCTCAGG 676
||||||| | ||||| || | |||| |||| | | ||| ||||||| ||||||||
Sbjct 588 CCTTCTC--G-CGGTGAACCAAATAACAACATCTCCTCTACATTCTTCCCCTTCCTCAGA 644
Query 677 AATGGTGGTATTCCTTCATCGCTTCC-TCCACTTAGAATCTCAAACAG-TGCTCCTGTCA 734
|||||||| |||||||| || ||||| ||| || |||||||||||||| ||| |||||||
Sbjct 645 AATGGTGGCATTCCTTCCTCTCTTCCTTCC-CTCAGAATCTCAAACAGTTGC-CCTGTCA 702
Query 735 CTCCACCAGTGTCATCCCCAACTT-CTAGAAACCCCAAACCATTG-CCTACTTGGGAATC 792
| || || || ||||| || |||| | || ||||| ||||| ||| || || ||||||||
Sbjct 703 CCCCCCCGGTCTCATCACCGACTTCCAAG-AACCCTAAACCGTTGCCCAAC-TGGGAATC 760
Query 793 TTTTACCAAACAATCCATGTCCATGGCTGCTAAACAGTCAATGACTTCTTTGAACTACCC 852
| | | || ||||||||| |||| ||||||||| || ||| | ||||| ||||| ||
Sbjct 761 TATCGCTAAGCAATCCATGGCCAT---TGCTAAACAATCCATGGCGTCTTTTAACTATCC 817
Query 853 GTTT-TATGCGGTGTCTGCACCTGCCAGTCCTACTCATCATCGCCAGTTCCATGCTCCGG 911
||| |||||||| ||||||||||| ||||| | || |||||||| || ||| | ||||
Sbjct 818 -TTTCTATGCGGTTTCTGCACCTGCTAGTCC-A-ACA-CATCGCCAATTTCATACCCCGG 873
Query 912 CTACTATACCTGAATGTGATGAGTCTGACTCTTCCACTGTTGATTCTGGTCATTGGATAA 971
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 874 CTACTATACCTGAATGTGATGAGTCTGACTCTTCAACTGTTGATTCTGGTCATTGGATAA 933
Query 972 GCTTTCAAAAGTTTGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCGCCTA 1031
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 934 GCTTTCAGAAGTTTGCACAACAACAGCCATTCTCTGCCTCTATGGTGCCAACCTCTCCTA 993
Query 1032 CCTTCAATCTCGTGAAACCTGCACCACAGCA-ATTGTCTCCAAACACAGCAGCAATCCAA 1090
|||||||||| |||||||| || || ||||| || ||||||||| || || || |||||
Sbjct 994 CCTTCAATCTTGTGAAACCCGCGCCTCAGCAGAT-GTCTCCAAATACTGCTGCGTTCCAA 1052
Query 1091 GAGATTGGTCAAAGCTCCGAGTTTAAGTTTGAGAACAGCCAAGTTAAGCCATGGGAAGGG 1150
||||||||||||||||| || ||||| |||||||| |||||||||||||| ||||||||
Sbjct 1053 GAGATTGGTCAAAGCTCTGAATTTAAATTTGAGAATAGCCAAGTTAAGCCTTGGGAAGGA 1112
Query 1151 GAGAGGATCCATGATGTGGCTATGGAGGATCTAGAGCTCACGCTTGGAAATGGTAAAGCT 1210
|||||||| |||||||||| |||||||||||| ||||| || |||||||| || || |||
Sbjct 1113 GAGAGGATACATGATGTGGGTATGGAGGATCTTGAGCTTACACTTGGAAACGGGAAGGCT 1172
Query 1211 CATAGTTGA 1219
| | |||||
Sbjct 1173 CGTGGTTGA 1181
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54811862555
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5