BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19360.1
Length=1769
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472163 jgi|Araly1|472163|fgenesh2_kg.1__2117__AT1G19360.1 2651 0.0
Ahg476650 jgi|Araly1|476650|fgenesh2_kg.2__1780__AT1G75110.1 1027 0.0
> Ahg472163 jgi|Araly1|472163|fgenesh2_kg.1__2117__AT1G19360.1
Length=1739
Score = 2651 bits (1435), Expect = 0.0
Identities = 1656/1758 (94%), Gaps = 34/1758 (2%)
Strand=Plus/Plus
Query 26 TCGTCGTCTTCGGAGACGAAG-CCAAACACACAAGCTCTCTCTTTCTCTCAACAACTTCA 84
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCGTCGTCTTCGGAGACGAAGCCCAAACACACAAGCTCTCTCTTTCTCTCAACAACTTCA 60
Query 85 AAAGCCGGCAGGTATGA-CCGAGACCTCCGAAGAAAAACAGAACATTTCTAGGGTTTAAC 143
|||||||| |||| ||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct 61 AAAGCCGGAAGGTCTGACCCGAGACCTCCGAA-TAAAACAGAACATTTCTAGGGTTTTGC 119
Query 144 TCTGATCCACCACATTACCAAAACTTTCTTCAACT-AGGTGAT-CAAAAAGGAGTCCTTT 201
||||||||||||||||||||||||||||||||| | ||||||| ||||||||||| |||
Sbjct 120 TCTGATCCACCACATTACCAAAACTTTCTTCAA-TAAGGTGATAAAAAAAGGAGTCTTTT 178
Query 202 TTCATTTTGAGCTTCTGGGTCTTTGGCTTCTGATTTCGCTA-T-AA-GGAAGAGAAAAGT 258
||||||||||||||||||||| ||||||||||||||||||| | || |||||||||||||
Sbjct 179 TTCATTTTGAGCTTCTGGGTC-TTGGCTTCTGATTTCGCTAGTGAAGGGAAGAGAAAAGT 237
Query 259 CAACGGCCATGGCGGGTCGTAGAGATAGAAGCCAACAACTCCGTGGATCTCGAATTGCGA 318
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 CAACGGCCATGGCGGGTCGTAGAGATAGAAGCCAACAGCTCCGTGGATCTCGAATTGCGA 297
Query 319 TCGCCATCCTCATCGGTATCTTTATCGGTTGCGTGTGCGCCGTTCTGTTCCCTTACGGGT 378
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
Sbjct 298 TCGCCATCCTCATCGGTATCTTTATCGGTTGCGTGTGCGCCGTTATGTTCCCATACGGCT 357
Query 379 TCTTCAACTCAAGCTCATCTCTCAAAGCAAGCGAACATCTTTCGAAGTCAAGCAACCAGG 438
|||||||||||||||||||||| |||| || ||||| ||||||||| ||||| ||||||
Sbjct 358 TCTTCAACTCAAGCTCATCTCTGAAAGTAAACGAACGTCTTTCGAAATCAAGTGACCAGG 417
Query 439 TTGGATCATCAGCTTGTGAATCGCCAGAACGAGTGAAAATGCTAAAATCAGACTTTGTAA 498
||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||| |
Sbjct 418 TTGGATCATCAGCTTGTGAATCGCCGGAACGAGTGAATATGCTAAAATCAAACTTTGCAT 477
Query 499 CTCTCTCAGAGAAGAATGCAGAGTTAAAGAAGCAGGTCAGAGAGTTAACAGAGAAGCTAC 558
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 478 CTCTCTCAGAGAAGAATGCAGAGTTAAAGAAGCAAGTCAGAGAGTTAACAGAGAGGCTAC 537
Query 559 GGTTAGCGGAGCAAGGATCAGACAATGCAAGAAAACAGGTTCTAGCATTGGGAACACAGA 618
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 538 GGTTAGCGGAGCAAGGATCAGACAATGCAAGAAAACAGGTTCTAGCTTTGGGAACACAGA 597
Query 619 TCAAGGCTGGTCCTTTTGGAACTGTCAAGAGTCTGAGAACTAATCCAACTATTC-TTCCT 677
||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 598 TCAAGGCGGGTCCTTTTGGAACTGTCAAGAGTCTGAGAACTAATCCAACTATCCTTTCC- 656
Query 678 GATGAATCTATAAACCCAAGATTGGCAAAGATTCTAGAGGAGATTGCTGTTGATAAAGAG 737
||||||||||||||||| ||||||| |||||||||||| ||||||||||| |||||||||
Sbjct 657 GATGAATCTATAAACCCTAGATTGGGAAAGATTCTAGAAGAGATTGCTGTCGATAAAGAG 716
Query 738 GTAATTGTAGCTCTTGCAAACGCAAATGTGAAAGCAATGTTGGAGGTTCAGATTGCTAGC 797
||||| || ||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 717 GTAATCGTGGCTCTTGCAAATGCAAATGTGAAAGCTATGTTGGAGGTTCAGATTGCTAGC 776
Query 798 ATTAAGAGAGTGGGTATAACAAACTATCTGGTTGTTGCTTTGGACGATTACATAGAGAAT 857
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 777 ATTAAGAGAGTGGGTATAACAAACTACCTGGTTGTTGCATTGGACGATTACATAGAGAAT 836
Query 858 TTATGTAAAGAGAACGATGTTGCGTATTACAAGAGAGATCCAGACAAGGACGTGGATACT 917
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 837 TTCTGTAAAGAGAAAGATGTTGCGTATTACAAGAGAGATCCAGACAAGGACGTGGACACT 896
Query 918 GTTGGGAAAA-CTGGAGGTAACCATGCTGTCTCTGGATTGAAATTCCGTGTGTTAAGAGA 976
|| ||||||| | |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 897 GTCGGGAAAAGC-GGAGGTAACCATGCCGTCTCTGGATTGAAATTCCGTGTGTTGAGAGA 955
Query 977 GTTCTTGCAACTCGGTTATGGTGTTCTTCTCTCGGATGTGGACATTGTCTTCTTGCAGAA 1036
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 956 GTTCTTGCAACTCGGTTATGGTGTTCTTCTCTCCGATGTGGATATTGTCTTCTTGCAGAA 1015
Query 1037 CCCATTTAGTCATCTATACAGAGACTCTGATGTGGAGTCAATGAGTGATGGCCATGACAA 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1016 CCCATTTAGTCATCTATACAGAGACTCTGATGTGGAGTCAATGAGTGATGGCCATAACAA 1075
Query 1097 TCATACGGCTTATGGGTTCAATGATGTGTTTGATGAACCAGCCATGGGATGGGCTCGGTA 1156
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1076 TCATACGGCTTATGGATTCAACGATGTGTTTGATGAACCAGCCATGGGATGGGCTCGGTA 1135
Query 1157 TGCTCACACTATGAGGATATGGGTTTTCAATTCCGGGTTTTTCTATTTGAGGCCTACAAT 1216
||||||||||||||||||||||||||||||||| |||||||| ||| | |||||||||||
Sbjct 1136 TGCTCACACTATGAGGATATGGGTTTTCAATTCGGGGTTTTTTTATCTAAGGCCTACAAT 1195
Query 1217 TCCATCAATCGAGCTGCTTGATCGCGTGGCAGATAGACTCTCTAAGGCTAAAGTGTGGGA 1276
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TCCATCAATCGAGCTGCTTGATCGCGTGGCAGATAGACTCTCTAAGGCTAAAGTGTGGGA 1255
Query 1277 CCAAGCGGTTTTCAACGAGGAACTGTTTTATCCTTCACATCCTGAGTACACTGCGCTACA 1336
||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct 1256 CCAAGCGGTTTTCAACGAGGAACTGTTTTATCCTTCACATCCTAATTATACTGCGCTACA 1315
Query 1337 TGCATCCAAGAGAGTCATGGATATGTATGAGTTTATGAACAGTAAGGTCCTTTTCAAGAC 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TGCATCCAAGAGAGTCATGGATATGTATGAGTTTATGAACAGTAAGGTCCTTTTCAAGAC 1375
Query 1397 TGTAAGAAAGAATCATGAACTGAAGAAGAAAGTGAAACCAGTGATTGTTCATGTGAATTA 1456
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1376 TGTAAGAAAGAATCATGAACTGAAGAAGAAAGTGAAACCGGTGATTGTTCATGTGAATTA 1435
Query 1457 CCATCCAGATAAGCTCAATAGAATGCAAGCCGTCGTTGAGTTCTACGTTAACGGTAAGCA 1516
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1436 CCATCCAGATAAGCTCAATAGAATGCAAGCCGTCGTTGACTTCTACGTTAACGGTAAGCA 1495
Query 1517 AGACGCGCTTGATAGCTTCCCCGATGGTTCTGAATGATTCACCTGAAAAGCAGATAGGCT 1576
|||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 1496 AGACGCACTTGATAGCTTCCCAGATGGTTCTGAATGATTCAC-TGAAAAGCAGATAGGCT 1554
Query 1577 aaaaaaaaCTTTCCGAGTTTCTTGACATTTGTGATTCTAATATATTTCTCCCTT-TT--- 1632
|||| | ||||||||||||||||||||||||||||||||| ||||| ||| || ||
Sbjct 1555 AAAACA--CTTTCCGAGTTTCTTGACATTTGTGATTCTAATCTATTTTTCCTTTATTGTT 1612
Query 1633 -CCAATGTTTACTGCTTCATGCCTTCTACTTTCCTC-TTTGTATTATGAATTTTTGTGTA 1690
||| |||||||||||||||||||| || |||| || |||||||||||||||||||||||
Sbjct 1613 TCCA-TGTTTACTGCTTCATGCCTTTTATTTTC-TCCTTTGTATTATGAATTTTTGTGTA 1670
Query 1691 TCTTATGGCTAAAATCGCAAGTCttttttttCTTTCTTAACCTCTCTGATCTTGTTATTA 1750
||||||||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1671 TCTTATGGCTAAAATCGAAAGTCTTTTTTTT-T-----AACCTCTCTGATCTTGTTA--- 1721
Query 1751 CATCCCAAGTCTTTGTTT 1768
|||| |||||||||||||
Sbjct 1722 CATCGCAAGTCTTTGTTT 1739
> Ahg476650 jgi|Araly1|476650|fgenesh2_kg.2__1780__AT1G75110.1
Length=1346
Score = 1027 bits (556), Expect = 0.0
Identities = 1075/1321 (81%), Gaps = 53/1321 (4%)
Strand=Plus/Plus
Query 262 CGGCCATGGCGGGTCGTAGAGATAGAAGCCAACAA-CTCCGTGGATCTCGAATTGCGATC 320
|||| ||||||||||||| ||| | || || |||| | |||||||||||||||||| |
Sbjct 20 CGGCAATGGCGGGTCGTAAAGACAAAATCC-ACAAGTTGCGTGGATCTCGAATTGCGGTT 78
Query 321 GCCATCCTCATCGGTA-TCTTTATCGGTTGCGTGTGCGCCGTTC-TGTTCCCTTACGGGT 378
|||||| | |||| | || ||||||| || || || ||| || ||||||| |||| |
Sbjct 79 GCCATCTTGGTCGGAATTC-TTATCGGGTGTGTCTGTTCCG-TCTTGTTCCCGAACGGCT 136
Query 379 TCTTCAACTC--AAGC-TCATCTCTCAAAG-CAA-G-CGAACATCTTTCGAAGTCAAGCA 432
|||| ||||| || | ||||| || | | || | |||| |||||||| |||| |
Sbjct 137 TCTTGAACTCGGAATCATCATCGCTGATTGTTAACGAAGAACGCCTTTCGAAATCAA-CC 195
Query 433 AC-CAGGTTGGATCATCAGC-T--TGTGAATCGCCAGAACGAGTGAAAATGCTAAAATCA 488
| ||| |||| | | || | ||||||||| | ||||| || |||||||| ||||||
Sbjct 196 TCTAAGGATGGA-C-T-GGCTTCATGTGAATCGTCTGAACGGGTCAAAATGCTCAAATCA 252
Query 489 GACTTTGTAACTCTCTCAG-AGAAGAATGCAGAGTTAAAGAAGCAGGTCAGAGAGTTAAC 547
||||||| || | |||| | || |||| |||||||||| |||||||||||| ||| ||||
Sbjct 253 GACTTTGCAATTATCTCCGAAG-AGAACGCAGAGTTAAGGAAGCAGGTCAGGGAGCTAAC 311
Query 548 AGAGAAGCTACGGTTAGCGGAGCAAGGATCAGACAATGCAAGAAAACAGGTTC-TAGCAT 606
|| ||| ||||||| ||||| |||||| | || ||||| || ||||| | || ||| |
Sbjct 312 GGAAAAGGTACGGTTGGCGGAACAAGGAACGGATAATGCTAGGAAACAAG-TCTTAGTTT 370
Query 607 TGGGAACACAGATCAAGGCTGG-TCCTTTTGGAACTGTCAAGAGTCTGAGAACTAATCCA 665
||||| || |||| ||||| || | ||||||| |||||||||||||||||||||||||||
Sbjct 371 TGGGATCAGAGATTAAGGCAGGAT-CTTTTGGCACTGTCAAGAGTCTGAGAACTAATCCA 429
Query 666 ACTATTCTTCCTGATGAATCTATAAACCCAAGATTGGCAAAGATTCTAGAGGAGATT-GC 724
||| | |||| || || ||| | ||||| ||||| || ||| || ||||| | | | ||
Sbjct 430 ACTGTGGTTCCCGACGAGTCTGTTAACCCCAGATTAGCTAAGCTTTTAGAGAA-AGTAGC 488
Query 725 TGTTGATAAAGAGGTAATTGTAGCTCTTGCAAACGCAAATGTGAAAGCAATGTTGGAGGT 784
||| |||||||| | ||||| | ||||||||| ||||||||||| ||||| ||||| |
Sbjct 489 TGTCAATAAAGAGATCATTGTGGTTCTTGCAAATTCAAATGTGAAACCAATGCTGGAG-T 547
Query 785 T-CAGATTGCTAGCATTAAGAGAGTGGGTATAAC-AAACTATCTGGTTGTTGCTTTGGAC 842
| |||||||||||||| ||||| || ||||| | |||||| || || | || |||||
Sbjct 548 TGCAGATTGCTAGCATCAAGAGGGTTGGTATT-CTAAACTACCTAATTATCGCCTTGGAT 606
Query 843 GATTACATAGAGAATTTATGTAAAGAGAACGATGTTGCGTATTACAAGAGAGATCCAGAC 902
|||| | |||||| ||| ||| || ||| || ||| | ||||||||||||||||||||
Sbjct 607 GATTCCGTAGAGAGTTTCTGTGAATCGAAGGAGGTTTCATATTACAAGAGAGATCCAGAT 666
Query 903 AAGG-ACGTGGATACTG-TTGGGAAAA-CTGGAGGTAACCATGCTGTCTCTGGATTGAAA 959
|| | | || || | || ||||||||| | |||||||| || ||||| || ||| |||||
Sbjct 667 AAAGCA-GTTGACA-TGGTTGGGAAAAGC-GGAGGTAATCACGCTGTTTCCGGACTGAAA 723
Query 960 TTCCGTGTGTTAAGAGAGTTCTTGCAACTCGGTTATGGTGTTCTTCTCTCGGATGTGGAC 1019
|||||||||||||||||||||||||| || || || |||||||||| ||||||||||||
Sbjct 724 TTCCGTGTGTTAAGAGAGTTCTTGCAGCTTGGCTACAGTGTTCTTCTATCGGATGTGGAC 783
Query 1020 ATTGTCTT-CTTGCAGAACCCATTTAGTCATCTATACAGAGACTCTGATGTGGAGTCAAT 1078
||||| || || ||||||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 784 ATTGTATTTCT-GCAGAACCCTTTTGGTCATCTGTACAGAGACTCTGATGTGGAGTCAAT 842
Query 1079 GAGTGATGGCCATGACAATCAT-ACGGCTTATGGGTTCAATGATGTGTTTGATGAACCAG 1137
||| |||||||| ||||| ||| || || ||||| ||||| ||||||||||||||||||
Sbjct 843 GAGCGATGGCCACGACAA-CATGACAGCGTATGGCTTCAACGATGTGTTTGATGAACCAT 901
Query 1138 CCATGGGATGGGCTCGGTATGCTCACACTATGAGGATATGGGTTTTCAATTCCGGGTTTT 1197
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 902 CCATGGGATGGGCTCGGTATGCACACACAATGAGGATATGGGTTTTCAATTCAGGGTTTT 961
Query 1198 TCTATTTGAGGCCTACAATTCCATCAATCGAGCTGCTTGATCGCGTGGCAGATAGACTCT 1257
||||| | || || || |||| ||||||||||| || || || ||||| ||| |||||
Sbjct 962 TCTATCTAAGACCAACTCTTCCTTCAATCGAGCTACTGGACCGAGTGGCTTATACACTCT 1021
Query 1258 CTAAGGCTAAAGTG--TGGGACCAAGCGGTTTTCAACGAGGAACTGTTTTATCCTTCACA 1315
||||| | | || | |||||||||||||||||||||||| |||| ||||| ||||| ||
Sbjct 1022 CTAAGTC-AGAG-GCATGGGACCAAGCGGTTTTCAACGAGCAACTCTTTTACCCTTCGCA 1079
Query 1316 TCCTGAGTACACTGCGCT-ACATGCATCCAAGAGAGTCATGGATATGTATGAGTTTATGA 1374
||| | |||||||| ||| ||| || ||||| ||||||||||||||||| ||||| ||||
Sbjct 1080 TCCCGGGTACACTG-GCTTACACGCTTCCAAAAGAGTCATGGATATGTACGAGTTCATGA 1138
Query 1375 ACAGTAAGGTCCTTTTCAAGACTGTAAGAAAGAATCATGAACTGAAGAAGAAAGTGAAAC 1434
| |||||||| || ||||| || || ||||||||||||||||||||||| | |||| |
Sbjct 1139 ATAGTAAGGTTCTCTTCAAAACCGTGAGAAAGAATCATGAACTGAAGAA-AT--TGAAGC 1195
Query 1435 CAGTGATTGTTCATGTGAATTACCATCCAGATAAGCTC-AATAGAATGCAAGCCGTCGTT 1493
| |||||||||||| ||||||||||||||||||| ||| || |||||||||| || ||
Sbjct 1196 CGGTGATTGTTCATCTGAATTACCATCCAGATAAACTCGAAC-GAATGCAAGCAGTAGTG 1254
Query 1494 GAGTTCTACGTTAACGGTAAGCAAGACGCGCTTGATAGCTTCCCCGATGGTTCTGAATGA 1553
|||||||| ||||| || || ||||||||||||||||||||||| |||||||| || |||
Sbjct 1255 GAGTTCTATGTTAATGGCAAACAAGACGCGCTTGATAGCTTCCCAGATGGTTCAGATTGA 1314
Query 1554 T 1554
|
Sbjct 1315 T 1315
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66391297035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5