BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19370.1
Length=2171
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920881 jgi|Araly1|920881|scaffold_102162.1 2835 0.0
Ahg476653 jgi|Araly1|476653|fgenesh2_kg.2__1783__AT1G75140.1 998 0.0
> Ahg920881 jgi|Araly1|920881|scaffold_102162.1
Length=1869
Score = 2835 bits (1535), Expect = 0.0
Identities = 1768/1878 (94%), Gaps = 26/1878 (1%)
Strand=Plus/Plus
Query 191 CTTTAACTTTTCCCATTACTG-TAATGGCGGATCCTCTAAACGGCAAGTCCTTCTTTATC 249
||| ||||||| ||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 1 CTTAAACTTTT-CCATTAC-GTTAATGGCGGATCCTCTAAACGGCAAGTCCTTCTTTTTC 58
Query 250 TGTTTCTCCCTTTTATTCTCCTTCACTCTGCTTTTCATTTCGCCGTTGTATGCCACCGAG 309
|| |||||||| || |||||| ||||| |||||||||||||||| ||| |||| ||||
Sbjct 59 TGCTTCTCCCTCATAACCTCCTTTACTCTACTTTTCATTTCGCCGTCGTACGCCAACGAG 118
Query 310 TCTCCGGTTATCGAAGATGTTTCTACCGATGTTGCTGTGTCTGTTAGCGAAACCAATCGA 369
|||||||||||||||||||||||||||||||| ||||| |||||||||||| || |||||
Sbjct 119 TCTCCGGTTATCGAAGATGTTTCTACCGATGTAGCTGTCTCTGTTAGCGAACCCGATCGA 178
Query 370 GAAGCTGTTCTATTGCATAATTTAGAGGAACTCGTTAAGAATCTGACGGAATTAGTCGCT 429
||||||||||| ||||||||| |||| || |||||||||||| |||| || |||||||||
Sbjct 179 GAAGCTGTTCTTTTGCATAATCTAGAAGACCTCGTTAAGAATTTGACAGATTTAGTCGCT 238
Query 430 AATCTAGATGCTAAGTTATCTGCAACTCCATTAAAGGAGAAGAACGAGAT--C----TCA 483
|||||||||||||||||||||| |||| || |||||||||||||||||| | |||
Sbjct 239 AATCTAGATGCTAAGTTATCTGAAACTTTATCAAAGGAGAAGAACGAGATCACTAAATCA 298
Query 484 GTTGATGATGACATCGGAGAAGAGAA--AGAGA-GAGGA--A-G--G-GCTAAGGCGTTT 534
||||||||||| |||||||||||||| ||||| ||||| | | | ||||||||||||
Sbjct 299 GTTGATGATGATATCGGAGAAGAGAAGGAGAGAGGAGGAGGAGGAAGAGCTAAGGCGTTT 358
Query 535 TCAGTGACTAAATACAGTCCGTTTTGGTCGGAGAGGTTTCAGTTTACATCAGCTGTGAAA 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TCAGTGACTAAATACAGTCCGTTTTGGTCGGAGAGGTTTCAGTTTACATCAGCTGTGAAA 418
Query 595 CTCAATTCCGATGCGACTTGTATCAATGTGTTGCCGTTTAGAGATTTCGAAGGTTCAAGC 654
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct 419 CTCAATTCCGATGCGACTTGTATCAATGTGTTGCCGTTTAAAGATTTCGAAGGTTCGAGC 478
Query 655 AAGTACTTTGCAATTGGTGATTCTAAAGGTAGAGTTTATGTGTTCTTGAGAAATGGTGAT 714
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 AAGTACTTTGCAATTGGTGATTTTAAAGGTAGAGTTTATGTGTTCTTGAGAAATGGTGAT 538
Query 715 GTTTTGATTGAGTTTTTCACCACTGTTGATTCTCCGGTTACTGCTATGGTTTCGTATTCA 774
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 539 GTTTTGATTGAGTTTTTCACCACTGTTGATTCTCCGGTTACTGCTATGGTTTCGTATTTA 598
Query 775 TCTGTGTTTAAGAACTCGAGTTTCGTGGTTACGGGTCATCAGAACGGTGCGGTGTTGTTG 834
|| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 599 TCGGTGTTTAAGAACTCGAGTTTCGTGGTTACGGGTCATCAGAATGGTGCGGTTTTGTTG 658
Query 835 CATCGGATTCACGAGGGATCGAATGGCGAAGATTGGAACTCGAATTCGGTTTCTATGGAA 894
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 659 CATCGGATTCACGAGGGATCGAATGGCGAAGATTGGAACTCGAATTCGGTTTCGATGGAA 718
Query 895 CATGTTGGGAAGTTTGATGTGGATGATTCAGCTGATCCTGTGACTTTGTTGGAAGTGCAT 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 CATGTTGGGAAGTTTGATGTGGATGATTCAGCTGATCCTGTGACTTTGTTGGAAGTGCAT 778
Query 955 CATGTGGGTCGTGTTAGGTATATATTGGCGACTGATTTAAGCGGGAAGCTCACGGTTTTA 1014
||||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct 779 CATGTGGGTCGGGTTAGGTATATATTGATGACGGATTTAAGTGGGAAGCTCACGGTTTTG 838
Query 1015 ACTGAGAACAGGACGGTTTATGGGTCGGTTATTCCATCGAGTAGACCGCTCGTGTTCTTG 1074
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 839 ACTGAGAACAGAACGGTTTATGGGTCGGTTATTCCATCGAGTAGACCGCTTGTGTTCTTG 898
Query 1075 AAGCAGAGATTGTTGTTTCTTACTGAGTCTGGTGCTGGTTCCTTGGACTTAAGAAGCATG 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGCAGAGATTGTTGTTTCTTACTGAGTCTGGTGCTGGTTCCTTGGACTTAAGAAGCATG 958
Query 1135 AAGATAAGAGAAACTGAGTGTGAAGGACTGAACCATTCGCTTGCGAGAACTTATGTTTTT 1194
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 959 AAGATAAGAGAAACTGAGTGTGAAGGACTAAACCACTCGCTTGCGAGAACTTATGTTTTT 1018
Query 1195 GATGCTGCGGAACGGTCTAAAGCTTATGGATTCACATCCGAGGGCGAGATCATTCACGTA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GATGCTGCGGAACGGTCTAAAGCTTATGGATTCACATCCGAGGGCGAGATCATTCACGTA 1078
Query 1255 TTGCTTCATGGAGATATAATGAACTTCAAATGTAGGGTTAGATCCAAGAAGAAGTTTCAA 1314
|||||||| |||||||||||||||||||||||||| || ||||||||||| ||||| |||
Sbjct 1079 TTGCTTCACGGAGATATAATGAACTTCAAATGTAGAGTCAGATCCAAGAAAAAGTTCCAA 1138
Query 1315 ATGGAGGAGCCAGTAGCTTTACAATCAATCAAAGGCTATCTTCTAGTTATCAACGAAGAA 1374
||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||
Sbjct 1139 ATGGAGGAGCCAGTAGCTTTACAATCAATTAAAGGCTATCTTCTTGTTATCAATGAAGAA 1198
Query 1375 AAGGTTTTCGCTTTCAATGTATCGACTCAGCATTATGTTCGTACTGCGGGTCCTCGGCTT 1434
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1199 AAGGTTTTCGCTTTCAATGTATCGACTCAGCATTATGTTCGTACTGCTGGTCCTCGGCTT 1258
Query 1435 TTGTTCTCAGCGGGATTAGAAGAGATCAGATCCGCGTTCTTGAGCCATCGCGAATCATCT 1494
|||||||| ||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1259 TTGTTCTCTGCGGGTTTAGAAGAGATCAGATCCGCGTTCTTGAGTCATCGTGAATCATCT 1318
Query 1495 TCACGAACCACCACAGTAGTAAAGACTAGGCCGTTAATAGCTAGCGACAGGGAAAACCTT 1554
||| | | ||| ||||||||||||| ||||| || |||||||||||| |||||||||||
Sbjct 1319 TCAAG-A--ACCGCAGTAGTAAAGACGAGGCCTTTGATAGCTAGCGACCGGGAAAACCTT 1375
Query 1555 CTTGTGATCGGTTTAGAAAACGGATATTTCGCTGTTTACAAATCGAAGCTGCCAACTCTC 1614
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1376 CTTGTGATTGGTTTAGAAAACGGATATTTCGCTGTTTACAAATCGAAGCTTCCAACTCTC 1435
Query 1615 AAAGGAGACTTCAACACAATGCTTTGGAGCAGTCCTGTGTTCTTCTTCATACTATTTCTA 1674
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 AAAGGAGACTTCAATACAATGCTTTGGAGCAGTCCTGTGTTCTTCTTCATACTATTTCTA 1495
Query 1675 TTCGGGGCTTGGCATTTCTTTGCCAAGAAGAAAGAATCGCTCACTGCATGGGGACCAGAT 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 TTCGGGGCTTGGCATTTCTTTGCCAAGAAGAAAGAATCGCTCACTGCATGGGGACCAGAT 1555
Query 1735 GATCCTTTTACCCCGACCGGCG-CACAAAATAGTTCGGCGAAAGAGCCAACATTTACTGA 1793
||||||||||| ||||| | || ||||||| |||||||||| || ||| |||||||||||
Sbjct 1556 GATCCTTTTACTCCGACTG-CGTCACAAAACAGTTCGGCGACAGCGCCGACATTTACTGA 1614
Query 1794 ACCTTCAAGAAGAAACGATGACCTCATGGATCTACGGAGAAGGTACGCTGGTGGCTCATA 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1615 ACCTTCAAGAAGAAACGATGACCTCATGGATCTACGGAGAAGGTACGCTGGTGGCACGTA 1674
Query 1854 CCGGTCAGTTGGAGCTAACGACCCGAGTTCAAGAGCTCCGGTTGATGGAAACTATAGAAC 1913
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1675 CCGGTCAGTTGGAGCTAACGACCCGAGTTCAAGAGCCCCGGTTGATGGAAACTATAGAAC 1734
Query 1914 AACCGCACAGGATCATAACAATTATCGCGGTGGTGGCTCGGGTCTTGATTCAAACGGGTT 1973
||||||||||||||||||||| |||||| | || ||||||||||||||||||||| ||
Sbjct 1735 AACCGCACAGGATCATAACAACTATCGCAGCGG---CTCGGGTCTTGATTCAAACGGTTT 1791
Query 1974 TGGTAATAGAAGAGATCATTTGTTTGGTAACAACAAAGTTTTGGATAACGAAAGTTAGAA 2033
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1792 TGGTAATAGAAGAGACCATTTGTTTGGTAACAACAAAGTTTTGGACAACGAAAGTTAGAA 1851
Query 2034 TCTTTGGATTACTTGCAA 2051
|||||||||||||| |||
Sbjct 1852 TCTTTGGATTACTTACAA 1869
> Ahg476653 jgi|Araly1|476653|fgenesh2_kg.2__1783__AT1G75140.1
Length=2201
Score = 998 bits (540), Expect = 0.0
Identities = 1145/1420 (81%), Gaps = 109/1420 (8%)
Strand=Plus/Plus
Query 371 AAGCTG-TTCTATTGCATA-ATTTAGAGGAACTCGTTAAGAATCTGACGGAATTAGTCGC 428
||| || ||| |||||||| | |||||||||| |||| |||||| |||||| |||||||
Sbjct 399 AAGGTGTTTC-ATTGCATAGA-CTAGAGGAACTTGTTAGGAATCTTACGGAAGTAGTCGC 456
Query 429 TA-ATCTAGATGCTAAGTTATCTGCAACTCCATTAAAGG-AGAAGAACGAGATCTCAGTT 486
|| || |||||||||||||||||| |||||| || |||| | ||||| |||| |||||
Sbjct 457 TAGAT-TAGATGCTAAGTTATCTGAAACTCCGTTTAAGGTA-AAGAAAGAGA--TCAGTC 512
Query 487 GATGATGACATCGGAGAAGAGAAAGAGAGAGGAAGGGCTAAGGCGTTTTCAGTGACTAAA 546
| |||||| ||| | | ||||| || |||||||| ||||| ||||| |||
Sbjct 513 G-TGATGAGATC--------G--A-AGAGA--AA--GCTAAGGCTTTTTCCGTGAC-AAA 555
Query 547 -TACAGTCCGTTT-TGGTCGGAGAGGTTTCAG-TTT-ACATCAGCTGTGAAACTCA-ATT 601
|||||||| ||| ||||| |||| | ||| | ||| ||||| ||||||||||| | | |
Sbjct 556 GTACAGTCC-TTTCTGGTCTGAGA-GATTC-GATTTCACATCGGCTGTGAAACT-AGACT 611
Query 602 CCGATGCGACTTGTATCAATGTGTTGCCGTTTAGAGATTTCGAAGGTTCAAGCAAGTACT 661
| || ||||||||||||| |||||||||||| ||||| |||||||| |||||||| |
Sbjct 612 CTGAAGCGACTTGTATCAGCGTGTTGCCGTTTCGAGATCACGAAGGTTTTAGCAAGTA-T 670
Query 662 TT-GCAATTGGTGATTCTAA-AGGTAGAGTTTATGTGTTCTTGAGAAATGGTGATGTTTT 719
|| ||| |||| ||||| || ||||| |||| |||||||||||||||||| ||||||||
Sbjct 671 TTCGCAGTTGGGGATTC-AAGTGGTAGGGTTTTTGTGTTCTTGAGAAATGGGGATGTTTT 729
Query 720 GATTGAGTTTTTCACCA-CTGTTGATTCTCCGGTTACTGCTATGGTTTCGTATTCA--TC 776
| ||||| ||||||| ||| ||||| || |||| || ||||| || | | || ||
Sbjct 730 GGTTGAG---TTCACCACCTG-CGATTCACCAATTACGGCAATGGTGTC-T-TACATGTC 783
Query 777 TGTGTTTAAGAACTCGAGTTTCGTGGTTACGGGTCATCAGAA-CGGTG-CGGTGTTGTTG 834
||||| ||||||| ||| |||||||| ||||| || || || ||| | | | ||||||
Sbjct 784 TGTGTATAAGAACGAGAGCTTCGTGGTGACGGGCCACCA-AAGCGGAGTC-ATCTTGTTG 841
Query 835 CATCGGA-TTCACGAGGGATCGAAT-GGCGAAGATTGGAACTCGAATT-CGGTTTCTATG 891
||| || | | |||||| ||| || || |||| || | ||||| || | | |||
Sbjct 842 CAT-AGACTCCGCGAGGGCTCG-ATCGGGGAAGGTT-----T-GAATTCCGCTGT-GATG 892
Query 892 GAACATGTTGGGAAGTTTGAT-G--TGGATGATTCAGCTGAT-CCTGTGACTTTGTTGGA 947
||| ||||||| ||||||||| | ||| || | | | | | |||||| | |||||
Sbjct 893 GAAAATGTTGGCAAGTTTGATGGCACGGAGGA--C-GGT-TTGCAAGTGACTCTATTGGA 948
Query 948 AGTGCATCATGTGGGTCGTGTTAGGTATATATTGGCGACTGAT-TTAAGCGGGAAGCTCA 1006
|||||||||||||||||| |||||||||||||||||||| ||| || ||||| |||||||
Sbjct 949 AGTGCATCATGTGGGTCGGGTTAGGTATATATTGGCGACGGATCTT-AGCGGAAAGCTCA 1007
Query 1007 CGGTTTTAACTGAGAACAGGACGGTTTATGGGTCGGTTATTCCATCGAGTAGACCGCTCG 1066
||||||| |||||||| || ||||||||||| ||||||| ||| |||||||||||||||
Sbjct 1008 CGGTTTTCACTGAGAAGAGAACGGTTTATGGCTCGGTTACCCCAACGAGTAGACCGCTCG 1067
Query 1067 TGTTCTTGAAGCAGAGATTGTTGTTTCTTACTGAGTCTGGTGCTGGTTCCTTGGACTTAA 1126
|||||||||||||||| |||||||||| || ||| ||||||||||||| ||||| ||||
Sbjct 1068 TGTTCTTGAAGCAGAGGCTGTTGTTTCTCACCGAGACTGGTGCTGGTTCGTTGGATTTAA 1127
Query 1127 GAAGCATGAAGATAAGAGAAACTGAGTGTGAAGGACTGAACCATTCGCTTGCGAGAACTT 1186
||||||||||||| |||||| | ||||||||||| || |||||||| || || |||| ||
Sbjct 1128 GAAGCATGAAGATCAGAGAATCCGAGTGTGAAGGTCTTAACCATTCTCTAGCAAGAAGTT 1187
Query 1187 ATGTTTTTGATGC-TGCGGAACGGTCTAAAGCTTATGGATTCACATCCGAGGGCGAGATC 1245
| ||||||||||| | ||||||||||||||||||| ||||||||||| || || || |||
Sbjct 1188 ACGTTTTTGATGCAT-CGGAACGGTCTAAAGCTTACGGATTCACATCTGAAGGTGAAATC 1246
Query 1246 ATTCACGTATTGCTTCAT-GGAGATATAATGAACTTCAAATGTAGGGTTAGATCCAAGAA 1304
||||||||||| |||| | ||||| || ||||||||||||||||| || ||||| |||||
Sbjct 1247 ATTCACGTATTACTTC-TCGGAGACATCATGAACTTCAAATGTAGAGTGAGATCAAAGAA 1305
Query 1305 GAAGTTTCAAATGGAGGAGCCAGTAGCTTTACAATCAATCAAAGGCTATCTTCT-AGTTA 1363
|||| |||||||||||||||| ||||| |||||| | ||||||||||||||||| | | |
Sbjct 1306 GAAGGTTCAAATGGAGGAGCCTGTAGCGTTACAAGCCATCAAAGGCTATCTTCTTA-T-A 1363
Query 1364 -TCAACGAAGA-AAAGGT-TTTCGCTTT-CAATGTATCGACTCAGCATTATGTTCGTACT 1419
||||| |||| |||| | ||| | | | ||| ||||||||||| || || ||||| ||
Sbjct 1364 GTCAACCAAGAGAAAG-TCTTT-G-TGTACAACGTATCGACTCAACACTACGTTCGAACC 1420
Query 1420 GCGGGTCCTCGGCTT-TTGTTCTCAGCGGGATTAGAAGAGATCAGATCCGCGTTCTTGAG 1478
|||||||||||||| || ||| | || | ||||||||| ||||| || ||||||||||
Sbjct 1421 ACGGGTCCTCGGCTTCTT-TTCCCTGCTGCATTAGAAGATATCAGGTCAACGTTCTTGAG 1479
Query 1479 CCATCGCGAATCATCTT---C-AC-GAACCACCACA-G-TAGTAAAGACTAGG-CCGT-T 1529
|||||| |||||||| | || || | |||| | | ||| |||| || || | |
Sbjct 1480 CCATCGAGAATCATCAAAAACCACCGATC-ACCAGAAGCTAGAAAAGG-TAACTCC-TCT 1536
Query 1530 AATAGCTAGCGACAGGGAAAACCTTCTTGTGATCGGTTTAGAAAACGGATATTTCGCTGT 1589
||||| |||||| | ||||| || |||||||| ||||||| | |||||||| |||||
Sbjct 1537 GATAGCAAGCGACCGCGAAAAGCTGCTTGTGATGGGTTTAGGAGACGGATATGTCGCTAC 1596
Query 1590 TTACAAATCGAAGCTGCCAACTCTC-AAAGGAGACTTCAACACAATGCTTTGGAGCAGTC 1648
|||||||| ||||| || | |||| |||| ||| |||||||||||||||||||||||||
Sbjct 1597 ATACAAATCAAAGCTTCCGA-TCTCCAAAGCAGAGTTCAACACAATGCTTTGGAGCAGTC 1655
Query 1649 CTGTGTTCTTCTTCATACTATTTCT-ATTCGGGGCTTGGCATTTCTTT-GCCAAGAAGAA 1706
|||| |||||||||||||| ||||| |||||| ||||||||||| ||| || ||||||||
Sbjct 1656 CTGTCTTCTTCTTCATACT-TTTCTTATTCGGCGCTTGGCATTT-TTTCGCTAAGAAGAA 1713
Query 1707 AGAATCGCTCACTGCATGGGGACCAGATGATCCTTTTACC 1746
|||||| ||||| || |||||||| ||||||||||| |||
Sbjct 1714 AGAATCTCTCACAGCTTGGGGACCTGATGATCCTTTCACC 1753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81703575525
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5