BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G19380.1

Length=677
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472165 jgi|Araly1|472165|fgenesh2_kg.1__2119__AT1G19380.1         778    0.0  


> Ahg472165 jgi|Araly1|472165|fgenesh2_kg.1__2119__AT1G19380.1
Length=551

 Score =  778 bits (421),  Expect = 0.0
 Identities = 496/532 (93%), Gaps = 6/532 (1%)
 Strand=Plus/Plus

Query  69   AAAATGAAGTTTGATGAATCGAAAACGCTCTTACCGGTGAGAAAACCTGTAAATGGCAAC  128
            |||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |  ||
Sbjct  1    AAAATGAAGTTTGAAGAATCGAAAACGCTCTTACCGGTGAGAAAACCTGTTAAT-G--AC  57

Query  129  CGCAAAACCGCTGGTTACAAGCTTTGGGTTCTAATCGCTGTTCTACTCTTGGCCTTTGGT  188
            |||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  58   CGCAAATCCGCTGGTTACAAACTTTGGGTTCTAATCGCAGTTCTACTCTTGGCCTTTGGT  117

Query  189  TCTATGTTAACCGGTTCCGTCTCTCTCAAAGGAATCGGTTTGTTCCATTCTGCTGACGGC  248
            ||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct  118  TCTATGTTAACCGCTTCAGTCTCTCTCAAAGGAATCGGTTTGTTCCATTCTGTTGACGGC  177

Query  249  GTTAACGCATTCTCTTTCGGCGATGATCTCGACGTTCTGGAAATTGAAGAGAGAGAGAAA  308
              ||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  178  ACTAACGCATTCTCCGTCGGCGATGATCTCGACGTTCTGGAAATTGAGGAGAGAGAGAAA  237

Query  309  GTGGTGAGACAGATGTGGGATGTGTACGGACGCTCCGGTGGCGTTAAGGTTCCTCGGTTC  368
            |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct  238  GTGGTGAGGCAGATGTGGGATGTGTACGGACGCTCCGGCGGCGTTAAGGTTCCTCGTTTC  297

Query  369  TGGCGAGAAGCTTTCGAAGCGGCGTATGAGTTTCTCATCAGTGATTCCGCC-GCCGTTCG  427
            ||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||
Sbjct  298  TGGCGAGAAGCTTTCGAAGCGGCGTATGAGTTTCTGATCAGTGATTCC-CCTGCCGTTCG  356

Query  428  AAATGCTGCCGTTTCCGATATCGCAAAGTTGTCTCTTGTTCGTTTTGTTAAGTCAGAGTC  487
             || | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  357  CAACGGTGCCGTTTCCGATATAGCAAAGTTGTCTCTTGTTCGTTTTGTTAAGTCAGAGTC  416

Query  488  TACTTCGGCCCAGCCCAATCTTCATTGACTTGTGAAGCCCATGAGGATCACATAAGATTT  547
             ||  ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||
Sbjct  417  CACGCCGGCCCAGCCCAATCCTCGTTGACTTGTGAAGCCCATGAGAATCACATAAGATTT  476

Query  548  TAATTGTATATAGGATTAAATATTAAATACCGAATA-TGTAGCCTTAATAAT  598
            |||||||||||||||||||||||| ||||||||| | |||| ||||||||||
Sbjct  477  TAATTGTATATAGGATTAAATATTTAATACCGAAAAATGTAACCTTAATAAT  528



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24856141884


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5