BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19390.1
Length=2367
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920884 jgi|Araly1|920884|scaffold_102165.1 2228 0.0
Ahg472005 jgi|Araly1|472005|fgenesh2_kg.1__1959__AT1G17910.1 907 0.0
> Ahg920884 jgi|Araly1|920884|scaffold_102165.1
Length=2419
Score = 2228 bits (1206), Expect = 0.0
Identities = 2010/2390 (84%), Gaps = 88/2390 (4%)
Strand=Plus/Plus
Query 22 TCCTTCTCGATTC-T--TTTCTCTCTTCTGC-T-T-A-TA-CT-CATCCTTGATTCAAAA 72
||||||||||||| | | |||||||||| | | | | || | |||| |||||||||||
Sbjct 43 TCCTTCTCGATTCGTCGTCTCTCTCTTCTACTTATAATTATGTCCATCTTTGATTCAAAA 102
Query 73 GTTGTCTCTCTTTCGACTTCGTGTCAATCCAAATCCGTATGTGGAAATATAAATATCCCA 132
||| || ||||||| ||||| | | | |||| ||| ||||||||||||||| ||||||
Sbjct 103 GTTTTCACTCTTTCAACTTC-T-T--GT-CAAA-CCGAATGTGGAAATATAAAGATCCCA 156
Query 133 TATCCTTTTGGAATTGAAAAAGGTTGTTATCTCAATGAA-TGGTACAAAATCGAATGCAA 191
|| || ||||| |||| |||||||| |||||||| || |||||||||||||| |||||
Sbjct 157 TACCCCTTTGGGATTGGTAAAGGTTGCTATCTCAA-CAAGTGGTACAAAATCGAGTGCAA 215
Query 192 AAACGCTACTTACCCGTTCCTCTTCAAGATGGGCATGGCAGTTGTGAATATCTCTCTTCC 251
|||||||| || ||||| || |||||||||||||||| ||||||||| |||||||||||
Sbjct 216 AAACGCTAGTTTTCCGTTTCTTTTCAAGATGGGCATGGAAGTTGTGAACATCTCTCTTCC 275
Query 252 AGGTGACG---ATGGTTA-TAATAATCCTGTG-TCATACGGATCAATTCGTGTCAAAATC 306
|||||||| ||||||| | ||||| ||| | |||| |||||||||||||||||||| |
Sbjct 276 AGGTGACGAATATGGTTACT-ATAATTCTG-GATCATTCGGATCAATTCGTGTCAAAAGC 333
Query 307 CCAATAACATCCATTGGATGTT-CGAGAGATGGAAAAGAGTCTGGATCGGTTCTAAATTT 365
| ||||||||| |||| |||| ||| |||||||||||| |||||||||||| | |||||
Sbjct 334 CGGATAACATCCGTTGGCTGTTCCGA-AGATGGAAAAGAATCTGGATCGGTTTTGAATTT 392
Query 366 TACGGACAGTCCTTTTTACTTTGGGATTGGAAACAGCCTGGTTGCTG-TTGGTTGCAACA 424
||||| || ||||||| ||||||| || |||||||||| || || | ||||||||||||
Sbjct 393 GACGGATAGCCCTTTTTTCTTTGGGTTTAGAAACAGCCTTGTAGC-GATTGGTTGCAACA 451
Query 425 GCAAGGCGTCGTTGACTAACATCAATCCGAGCAAGGTGGGATGCGAGTTGAATTGCACTG 484
||||||| |||||||||||||| | || | ||||||||||||||||||||| ||||||
Sbjct 452 GCAAGGCCTCGTTGACTAACATTGAGCCAAACAAGGTGGGATGCGAGTTGAACTGCACTA 511
Query 485 CAAGCAAAGAGACGTTGCCAAGTAAAAGCATTCCTTTTTTCGACAAAACTGGTTGCT-CA 543
|||||||||||| ||| || || |||||||| ||||||||||||||||| || || | |
Sbjct 512 CAAGCAAAGAGAAGTTTCCTAGCAAAAGCATCCCTTTTTTCGACAAAACCGGATG-TACT 570
Query 544 AACAACAAGTTGCC--CTA-TTACAGCT-CGCTTTGTACAAAGAACAACGGGGAAGATGA 599
| |||| |||||| || ||||| || || |||||||||||||||| |||||||| ||
Sbjct 571 AGCAACGCGTTGCCTTATACTTACA-CTCCGGTTTGTACAAAGAACAAAGGGGAAGAAGA 629
Query 600 AAGAAGCTGTGATGGTAACGGATGCTGCATCG--CAGGTCTA-CTGGATTCTGAGGCTCC 656
||||||||||||||| ||||||||||| ||| || ||||| | || | ||||||||
Sbjct 630 AAGAAGCTGTGATGGCAACGGATGCTG--TCGTTCAAGTCTACCCGG-TGATGAGGCTCA 686
Query 657 ACAAGTGATCGGCATCAACATAGAGAGCTTTGATCATGGAAACTCGACAAAACTAGAATG 716
||| |||||||| |||| |||||||||||||||||||||||| |||||| | ||||||
Sbjct 687 ACAGGTGATCGGTGTCAAAATAGAGAGCTTTGATCATGGAAACACGACAAGCCGAGAATG 746
Query 717 CAGAGTCGCTTTCTTAACAGATGACGTCTCCCCGTTTTCGAATGCAAGCGAACCAAAAAG 776
|||||||||||||||||||||||| |||| | |||| || ||||||| ||||||| | ||
Sbjct 747 CAGAGTCGCTTTCTTAACAGATGAAGTCTACACGTTATCTAATGCAACCGAACCAGAGAG 806
Query 777 GTTATTTGCTAAAAGATATGCTACAGTTAGT-TTAGGATGGGTCATCCAGACGAAGAATC 835
||| ||||||||| | ||||||| |||||| || ||||||||| | ||||| || ||||
Sbjct 807 GTTTTTTGCTAAAGGGTATGCTATAGTTAGAATT-GGATGGGTCCTTCAGACAAAAAATC 865
Query 836 TCTCCTTTGTAAACTCCTTGAGCTGCAAAAACAC-GAAAGAGTACGATAA-CTCTACGTA 893
| || || |||||||| | |||||||||||||| ||| ||||||||||| || ||| ||
Sbjct 866 TTTCATTCCTAAACTCCCTAAGCTGCAAAAACACAGAA-GAGTACGATAAACT-TACATA 923
Query 894 TAATATTAAACTC-GTAACAAGTTGCATATGCAACAATGTCACCATTTCTGGGAC-AGAT 951
|||||| ||||| | |||||| |||| |||||||||| |||||| | |||||| | ||
Sbjct 924 TAATATGCAACTCAG-AACAAGCTGCAGATGCAACAATATCACCACTAATGGGACCA-AT 981
Query 952 TATGCAAACTGTGGATGCTCCCA-AGGTTACGA-AGGTAACCCATACCTCCCTGGCGGAT 1009
|||||||||||||||||| | | |||||| | |||||||||||||| | ||||||||
Sbjct 982 TATGCAAACTGTGGATGCGCG-AGAGGTTAT-ACAGGTAACCCATACCGCATTGGCGGAT 1039
Query 1010 GCAAAGATATTAATGAGTGCCTA---CGTAA-CTCTTATGGACAA-CGCCAAAATTGTAG 1064
|| ||||||||||||| |||||| || || | | |||| || ||| | |||||
Sbjct 1040 GCGAAGATATTAATGACTGCCTAATACGCAATCCCG-ATGG-CAGTCGCTGGCACTGTAG 1097
Query 1065 AGAAAGCGATACTTGTGTGAATCTTCCCGGAACATTTAATTGCATTGGCAATAAGACTAG 1124
||||||||| ||||| |||||| | || |||| ||| ||||| | ||| |||||||| |
Sbjct 1098 AGAAAGCGACACTTGCGTGAATGTGCCTGGAAGTTTTTATTGCGTGGGCGATAAGACTGG 1157
Query 1125 AGTAACAATGATAGGAGTAGGTTCTGCTTTTGGCATCTTAGTCCTAGT-GGTTGGAATTT 1183
|| | ||||||||| |||||| | | ||| |||||||||||||||| ||| |||||||
Sbjct 1158 AGCAGTAATGATAGGCGTAGGTGCAGGTTTAGGCATCTTAGTCCTAGCAGGT-GGAATTT 1216
Query 1184 GGTGGTTGAGAAAGTTCCTT-AAGAAGAGAAGGATGAGTAAGAGGAAAAGAAAGTTCTTT 1242
||||| |||||||||||||| || ||||||| ||||||||||||||||||||| ||||||
Sbjct 1217 GGTGGCTGAGAAAGTTCCTTGAA-AAGAGAAAGATGAGTAAGAGGAAAAGAAAATTCTTT 1275
Query 1243 AAACGTAACGGAGGACTATTGTTGCAACAACAATTAAATACAA-ATAAAGGCAACGTCGA 1301
||||||| || ||||||||||||||||||||| || |||||| | || || ||||||||
Sbjct 1276 GAACGTAATGGGGGACTATTGTTGCAACAACAACTACATACAAGAGAA-GGTAACGTCGA 1334
Query 1302 GAAGACACGAATATTCAGCTCGAGAGAGCTTGAAAAAGCCACTGATAA-CTTCAGCGAAA 1360
||||||| ||||||||| ||||| ||| |||||||| |||||||| || ||| |||||||
Sbjct 1335 GAAGACAAGAATATTCACCTCGACAGAACTTGAAAAGGCCACTGA-AAGCTTTAGCGAAA 1393
Query 1361 GCAGGATACTTGGACAGGGCGGTCAAGGCACTGTGTACAAAGGAATGCTTGTCGATGGTA 1420
|||||||||||||| || ||||| || ||||| ||||| ||||||||||| |||||||
Sbjct 1394 ATAGGATACTTGGACAAGGTGGTCAGGGTACTGTATACAAGGGAATGCTTGTAGATGGTA 1453
Query 1421 GAACTGTTGCTGTCAAGAAATCAAAAGTTGTTGATGAAGACAAACTAGAGGAGTTTATCA 1480
||||||| |||||||||||||| | |||||| ||||||||||||||||||||||| ||||
Sbjct 1454 GAACTGTCGCTGTCAAGAAATCCACAGTTGTAGATGAAGACAAACTAGAGGAGTTCATCA 1513
Query 1481 ACGAGGTCGTCATTCTATCTCAGATCAACCATAGACATGTCGTCAAGCTCCTAGGATGTT 1540
| || ||||||||||| |||||||| ||||||||||||||||||||||| | |||||||
Sbjct 1514 ATGAAGTCGTCATTCTCTCTCAGATTAACCATAGACATGTCGTCAAGCTTTTGGGATGTT 1573
Query 1541 GCCTTGAGACCGAAGTTCCTACTCTTGTTTATGAGTTTATCCCCAACGGTAACCTTTTCC 1600
| ||||| || |||||||| | ||| ||||| |||||||| ||| |||||||||||||
Sbjct 1574 GTCTTGAAACAGAAGTTCCAATTCTGGTTTACGAGTTTATTGTCAATGGTAACCTTTTCC 1633
Query 1601 AGCATATCCACGAAGAATCTGATGACTACACAAAGACCTGGGGCA-TGCGTTTGCGCATT 1659
| |||||||| |||||||||||||| ||||| || ||||| | |||| |||||||||
Sbjct 1634 AACATATCCATGAAGAATCTGATGATTACACGGTGAGTTGGGG-AGTGCGCTTGCGCATT 1692
Query 1660 GCAGTTGATATCGCAGGAGCTCTTTCGTATTTGCACTCTGCTGCAAGCTCTCCAATTTAT 1719
|| || ||||| || |||||||||||||||||||| ||||||||| | ||||||||||||
Sbjct 1693 GCCGTGGATATTGCTGGAGCTCTTTCGTATTTGCATTCTGCTGCATGTTCTCCAATTTAT 1752
Query 1720 CACAGAGATATCAAGTCAACAAACATATTACTAGATGAGAAGTATCGAACCAAGGTGTCT 1779
||||||||||| ||||||||||||||||||||||| |||||||||||| | || ||||||
Sbjct 1753 CACAGAGATATAAAGTCAACAAACATATTACTAGACGAGAAGTATCGAGCTAAAGTGTCT 1812
Query 1780 GATTTCGGTACTTCAAGATCAGTAACAATCGATCATACTCACTGGACAACAGTTATTTCA 1839
||||| |||||||||||||||||||| | ||||||||||||||||||||| ||||||||
Sbjct 1813 GATTTTGGTACTTCAAGATCAGTAACGGTAGATCATACTCACTGGACAACAATTATTTCA 1872
Query 1840 GGTACAGTTGGATATGTGGATCCAGAGTACTACGGGTCTAGCCAATATACTGATAAGAGT 1899
|||||||| |||||||||||||||||||||||||| || ||||||||||| |||||||||
Sbjct 1873 GGTACAGTAGGATATGTGGATCCAGAGTACTACGGATCCAGCCAATATACCGATAAGAGT 1932
Query 1900 GATGTTTATAGTTTTGGCGT-AGTCCTCGTTGAGCTTATTACAGGAGAGAAGCCTGTAAT 1958
||||||||||| || || || | |||| ||||| ||||||||||||||||| ||||||||
Sbjct 1933 GATGTTTATAGCTTCGGGGTCA-TCCTTGTTGAACTTATTACAGGAGAGAAACCTGTAAT 1991
Query 1959 AACCGTTTCGAATTCTCAAGAAATAAGAGG-TCTAGCGGATCATTTCAGAGTTGCTATGA 2017
|||| || ||||||||| ||||||||||| | | ||||| |||||||||||||| ||||
Sbjct 1992 AACCCTTCCGAATTCTCGGGAAATAAGAGGGT-TGGCGGAGCATTTCAGAGTTGCCATGA 2050
Query 2018 AAGAGAACAGATTCTTTGAGATCATGGATGCTCGAATAAGAGATGGCTGCAAACCGGAAC 2077
||||||||| ||||||||| || |||||||||||||| | |||||| |||||||| ||||
Sbjct 2051 AAGAGAACAAATTCTTTGATATTATGGATGCTCGAATCACAGATGGTTGCAAACCAGAAC 2110
Query 2078 AAGTAATGGCAGTGGCAAATCTAGCAAGGAGATGTTTGAATTCTAAGGGAAAGAAGCGGC 2137
||||||||||||| || |||||||||| |||||| ||||||| |||||||||||||| |
Sbjct 2111 AAGTAATGGCAGTAGCGAATCTAGCAAATAGATGTCTGAATTCAAAGGGAAAGAAGCGCC 2170
Query 2138 CATGTATGAGAAAAGTGTTTACCGA-CTTGGAAAAGATACT-TGCGTCTCAAGAGGATTC 2195
|| ||||||| |||||||||||| || | | ||||| || | | |||| |||||||||
Sbjct 2171 CAAATATGAGACGAGTGTTTACCGAGCTAG-AGAAGAT-CTGTTCATCTCCAGAGGATTC 2228
Query 2196 ATTGGTAAATATTGAAAATGACGATGGTGCTG-ATGATGAGGAAGAAGGAATGACTATGA 2254
| |||| || ||||||||||| ||| || || |||| |||||||||||||| | || |
Sbjct 2229 ACTGGTTCATCTTGAAAATGACAATGATG-TGGATGAAGAGGAAGAAGGAATTAATAC-A 2286
Query 2255 TAA-ACATAGATGATTCACA-G-ACCATTTATGTTACTGCTCCAGCCCCTAGTATTGTGG 2311
| |||||| ||| || | |||||| || ||||||||||||| |||||||||| |
Sbjct 2287 GCAGACATAGCTGA--CATGTGGACCATTGGTGCTACTGCTCCAGCCTCTAGTATTGTTG 2344
Query 2312 CTTCGTCTTCCTCCTCAGATGTTCAACCATTGTTTCCTCACCCCACATGG 2361
||||||||| ||| | ||| ||| ||||||| |||||| ||||||||||
Sbjct 2345 CTTCGTCTTTCTCGTTAGAAGTTGAACCATTACTTCCTCGCCCCACATGG 2394
> Ahg472005 jgi|Araly1|472005|fgenesh2_kg.1__1959__AT1G17910.1
Length=2213
Score = 907 bits (491), Expect = 0.0
Identities = 891/1083 (82%), Gaps = 32/1083 (3%)
Strand=Plus/Plus
Query 1128 AACAATGATAGGAGTAGGTTCTGCTTTTGGCATCTTAGTCCTAG-TGGTTGGAATTTGGT 1186
||||||| ||||| ||||| | | |||| ||||| || ||| || ||| || ||||
Sbjct 1056 AACAATGCTAGGATTAGGTGCAGGTTTTTTTGTCTTAATCGTAGCCGG-TGGTATATGGT 1114
Query 1187 GGTTGAGAAAG-TTCCTTAAG-AAGAGAAGGATGAGTAAGAGGAA-AAGAAAGTTCTTTA 1243
|||||| |||| || ||| || || | |||||||| ||| | || | |||| ||||| |
Sbjct 1115 GGTTGAAAAAGCTT-CTT-AGAAAAAAAAGGATGACAAAGCGCAAGAGGAAA-TTCTTCA 1171
Query 1244 AACGTAACGGAGGACTATTGTTGCAACAACAATTAAATACAAATAAAGGCA-ACGTCGAG 1302
||||||| ||||||||||||||||| ||||| |||| ||||| | |||||| | || ||
Sbjct 1172 AACGTAATGGAGGACTATTGTTGCAGCAACAGTTAACTACAACTCAAGGCAGA-GTTGAA 1230
Query 1303 AAGACACGAATATTCAGCTCGAGAGAGCTTGAAAAAGCCACTGATAACTTCAGCGAAAGC 1362
|| ||| |||||||||||| |||||||| |||||||||||||||||||||| |||||
Sbjct 1231 AAAACAAAAATATTCAGCTCAAGAGAGCTGGAAAAAGCCACTGATAACTTCAACGAAAAT 1290
Query 1363 A-GGATACTTGGACAGGGCGGTCAAGGCACTGTGTACAAAGGAATGCTTGTCGATGGTAG 1421
| || || ||||||| || || ||||| |||||||||||||| |||||||| ||||||||
Sbjct 1291 AGGGTTA-TTGGACAAGGTGGCCAAGGAACTGTGTACAAAGGTATGCTTGTAGATGGTAG 1349
Query 1422 AACTGTTGCTGTCAAGAAATCAAAAGTTGTTGATGAAGACAAACTAGAGGAGTTTATCAA 1481
||||||| ||||||||||| || ||||| ||||||||||||||| | ||||| |||||
Sbjct 1350 GTCTGTTGCAGTCAAGAAATCCAATGTTGTAGATGAAGACAAACTACAAGAGTTCATCAA 1409
Query 1482 CGAGGTCGTCATTCTATCTCAGATCAACCATAGACATGTCGTCAAGCTCCTAGGATGTTG 1541
||| ||| | ||||| || ||||||||||||||||| ||||| ||||| | ||||||||
Sbjct 1410 CGAAGTCATTATTCTCTCCCAGATCAACCATAGACACGTCGTGAAGCTTTTGGGATGTTG 1469
Query 1542 CCTTGAGACCGAAGTTCCTACTCTTGTTTATGAGTTTATCCCCAACGGTAACCT-TTTCC 1600
|||||||||||||||||| ||||||||| ||||||||| ||||||| ||||| ||| |
Sbjct 1470 TCTTGAGACCGAAGTTCCTGTTCTTGTTTACGAGTTTATCACCAACGGAAACCTCTTT-C 1528
Query 1601 AGCATATCCACGAAGAATCTGATGACTACACAAAGACCTGGGGCATGCGTTTGCGCATTG 1660
||||| |||| ||||||| ||| |||||||| | ||||| | ||| |||||||||
Sbjct 1529 AGCATCTCCATGAAGAATTTGACGACTACACGGTGTTATGGGGTGTACGTATGCGCATTG 1588
Query 1661 CAGTTGATATCGCAGGAGCTCTTTCGTATTTGCACTCTGCTGCAAGCTCTCCAATTTATC 1720
| || |||||||| |||||| |||||||| | ||| |||||||| | |||||||||||||
Sbjct 1589 CTGTAGATATCGCGGGAGCTTTTTCGTATCTACACACTGCTGCATGTTCTCCAATTTATC 1648
Query 1721 ACAGAGATATCAAGTCAACAAACATATTACTAGATGAGAAGTATCGAACCAAGGTGTCTG 1780
|||||||||||||||||||||||||||||||||||||||| || ||| | || |||||||
Sbjct 1649 ACAGAGATATCAAGTCAACAAACATATTACTAGATGAGAAATACCGAGCTAAAGTGTCTG 1708
Query 1781 A-TTTCGGTACTTCAAGATCAGTAACAATCGATCATACTCACTGGACAACAGTTATTTCA 1839
| ||| || |||||||||||||| | || ||||||||||| |||||||| || || ||
Sbjct 1709 ACTTT-GGAACTTCAAGATCAGTTTCCATAGATCATACTCATTGGACAACGGTAATATCG 1767
Query 1840 GGTACAGTTGGATATGTGGATCCAGAGTACTACGGGTCTAGCCAATATACTGATAAGAGT 1899
|||||||| || |||||||||||||| ||||||||||| ||||| | |||||| || |||
Sbjct 1768 GGTACAGTCGGGTATGTGGATCCAGAATACTACGGGTCCAGCCATTTTACTGAAAAAAGT 1827
Query 1900 GATGTTTATAGTTTTGGCGTAGTCCTCGTTGAGCTTATTACAGGAGAGAAGCCTGTAATA 1959
|||||||||||||| || || ||||| || |||||||||| |||||||||||||| |||
Sbjct 1828 GATGTTTATAGTTTCGGGGTTGTCCTAGTAAAGCTTATTACTGGAGAGAAGCCTGTTATA 1887
Query 1960 ACCGTTTC-GA-ATTCTCAAGAAATAAGAGG-TCTAGCGGATCATTTCAGAGTTGCTATG 2016
||| |||| || | |||||||||||| ||| | | || ||| |||||||| |||| |||
Sbjct 1888 ACCCTTTCAGAGA--CTCAAGAAATAACAGGGT-TGGCAGATTATTTCAGACTTGCAATG 1944
Query 2017 AAAGAGAACAGATTCTTTGAGATCATGGATGCTCGAATAAGAGATGGCTGCAAACCGGAA 2076
|||||||||||||| ||||||||||| ||||||||||||||| ||| ||||| | ||||
Sbjct 1945 AAAGAGAACAGATTGTTTGAGATCATCGATGCTCGAATAAGAAATGATTGCAAGCTGGAA 2004
Query 2077 CAAGTAATGGCAGTGGCAAATCTAGCAAGGAGATGTTTGAATTCTA-AGGGAAAGAAGCG 2135
|| || || |||||||||||||||||| ||| ||| |||| | |||||| || ||
Sbjct 2005 CAGGTGATTGCAGTGGCAAATCTAGCATTGAGGTGTCTGAAGAAGACAGGGAA-GACTCG 2063
Query 2136 GCCATG-TATGAGAAAAGT-GTTTACCGACTT-GGAAAAGATACT-TGCGTCTCAAGAGG 2191
|||| | ||||||| |||| | | || | ||| ||| | ||| || | | |||| |||||
Sbjct 2064 GCCA-GATATGAGAGAAGTTGCT-ACAG-CTTTGGAGAGGAT-CTGTTCATCTCCAGAGG 2119
Query 2192 ATT 2194
|||
Sbjct 2120 ATT 2122
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89169263545
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5