BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19410.1
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472168 jgi|Araly1|472168|fgenesh2_kg.1__2122__AT1G19410.1 924 0.0
> Ahg472168 jgi|Araly1|472168|fgenesh2_kg.1__2122__AT1G19410.1
Length=1275
Score = 924 bits (500), Expect = 0.0
Identities = 734/838 (88%), Gaps = 51/838 (6%)
Strand=Plus/Plus
Query 1 ATGGAAAAGATCAATACTGATGACTTGCTGGTGAAGATTTTATCATTTCTTCCAACAAAA 60
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGACAAGATCAATACTGATGACTTGCTGGTGAAGATATTATCATTTCTTCCAACAAAA 60
Query 61 GTTGCTGTGA-CCACTAGCATTTTGTCTAAACG-TGGAAGTTTC-TT---T--GGTTG-C 111
|||||||| | | |||||||||||||||||||| |||||||||| || | || || |
Sbjct 61 GTTGCTGT-ATCAACTAGCATTTTGTCTAAACGATGGAAGTTTCATTGGATGCGGGTGCC 119
Query 112 ---G---G-GACATTGCCGCTACATAGAGTTCCGGTTTTGGAAAGCTTGCCTCTCAAGTT 164
| | ||||||||| || ||||||||||| ||||||||| |||||| |||| || |
Sbjct 120 AAAGCTTGAGACATTGCCACTGCATAGAGTTCCCGTTTTGGAACGCTTGCGTCTCGAGCT 179
Query 165 TAGTACTTTACCATTTCAACCAGAAGATATCAAACTATGCGTTGAAGCTGCAGTTTCTCA 224
|||| |||||||||||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct 180 TAGTTCTTTACCATTTCAACCAGAAGATATCAAACTATGGGTTGAAGTTGCAGTCTCTCT 239
Query 225 CTGTGTGCGGGAGCTTTTCATTGATTATTATCCTCATCCATACAAATTTGCTACATTGCC 284
|| ||||| ||||||| |||||| |||||| |||||| |||||||| ||||||||||||
Sbjct 240 CTCTGTGCTGGAGCTTAGCATTGACTATTATTCTCATCAATACAAATCTGCTACATTGCC 299
Query 285 ATTTTGCGTGTACACCTGCAAATCGCTCGAGACCCTTGCACTCTCTT-ATGCAATTCTCA 343
||||||| |||||||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 300 ATTTTGCTTGTACACCTGCAAATCGCTCGAGACCCTCGCACTCT-TTGATGCAATTCTCA 358
Query 344 TGGTTGTTCCTCGTATGGCTTGTCTTCCATCTCTGAAAAACTTGCTACTACAAGGAGTGA 403
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 359 TGGTTGTTCCTCGTATGGCTTGTCTTCCATCTCTGAAAAACTTGCTACTATGTGGAGTGA 418
Query 404 GATACGTAGATGAATCTTTTCAACTACTCGATGAATCTCATACGGTTTGTTTTCCCTCCC 463
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 419 GATACGTAGATGAATCTTTTCAACTACTCGATGTATCTCGTACGGTTTGTTTTCCCTCCC 478
Query 464 TG-AAATCTTTGCACCTTAAAGAAGTAATCTCCTCCGATGAAAGATATCTTCGATCGCTT 522
|| ||| ||||| ||||||||| ||| ||| ||||||||||| |||||| |||||||||
Sbjct 479 TGGAAA-CTTTGTTCCTTAAAGACGTAGTCTTCTCCGATGAAAAATATCT-CGATCGCTT 536
Query 523 CTTGCCAATTGCCCTGTTCTTGAAGAATTGGTCATGGAACTAGATGAATATGATACTTTG 582
|||||||||||||||| ||||||| | ||||||||||||||| |||||||||||||| ||
Sbjct 537 CTTGCCAATTGCCCTGATCTTGAATATTTGGTCATGGAACTACATGAATATGATACTATG 596
Query 583 GGAGCTGTCCACATCATTGTACCGTCTTTGAAGAGTTTATCATTAGATATAGATTGTGAT 642
|||||| | | ||| | | | | | || || | ||| | | | | ||
Sbjct 597 GGAGCTTT-----T-ATT--A---T-T---A-G--TT-AT-A---GAT-T-G-T-G--AT 627
Query 643 CGTTCTTCCAATGTAGTTGAAATTGTCGCTCCTTCTTTGGAGTACATCAAACTAAATGAT 702
| |||| || |||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 628 CATTCTCCCGATGTGGTTGAAATTGTTGCTCCTTCTTTGGAGTACATCAAACTAAATGAT 687
Query 703 CACAGCGACAATAAATTCTTGATAGAGAATATGCCTAAGCTTGAAGAGGCATACATTGAT 762
|||| | ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 688 CACAACAACAATAAATTCTTGATAGAGAATATGCCTAATCTTGAAGAGGCATACATTGAT 747
Query 763 GCTAATATCTTTGAATATGAGAAATTTCTTGGAGCTTTCACATCTGTTAAGCGTCTAA 820
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 748 GCTAATATCTTTGAATGCGAGAAATTTCTTGGAGCTTTCACATCTGTTAAGCGTCTAA 805
Score = 418 bits (226), Expect = 5e-116
Identities = 282/309 (91%), Gaps = 4/309 (1%)
Strand=Plus/Plus
Query 949 TGTACTTGTAAACCATATTGGTCGATAATACTTCTCCGGTTGCTCAAAGGATCTCCTAAT 1008
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 856 TGTACTTGTAAACCATATTGGTCGGTAATACTTCTCCGGTTGCTCAAAGGATCTCCTAAT 915
Query 1009 CTAAAAGTCCTTGAGCTC-ACAG--ACAATAAAATGCCATTGTGTTTTAAGGATCCACTG 1065
||||||||||| ||| | || | ||||||| || || |||||||||| |||||||
Sbjct 916 CTAAAAGTCCTAGAGGTTGACGGCGACAATAATATTCCCGAATGTTTTAAGGCTCCACTG 975
Query 1066 GTTTGCTGGGATCAAGTGACACCTGTGCCTGAATGTTTGCTGACTAGTCTAGAGACTTTC 1125
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 976 GTTTGCTGGGATCAAGTGACACCTGTGCCAGAATGTTTGCTGACGAGTCTAGAGACTTTC 1035
Query 1126 AAGTGGACAGACTTACCACCAAGACAAGAAGCGAGAGATATGCGAACAGTTTTGGTTCTG 1185
|||||||||| | ||||| ||||||||||||||||||||||||||||||||||| | |||
Sbjct 1036 AAGTGGACAGGCATACCATCAAGACAAGAAGCGAGAGATATGCGAACAGTTTTGATCCTG 1095
Query 1186 AAAAACGAAATGGTAAAACTTTTAGACGATAAGATCGTTAGGTCAGAAAGAAAAGAACAC 1245
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1096 AAAGACGAAATGGTAAAACTTTTAAACGATAAGATCGTTAGGTCAGAAAGAAAAGAAT-C 1154
Query 1246 ATCATCTTC 1254
||| |||||
Sbjct 1155 ATCTTCTTC 1163
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48911702511
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5