BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19410.1 Length=1308 Score E Sequences producing significant alignments: (Bits) Value Ahg472168 jgi|Araly1|472168|fgenesh2_kg.1__2122__AT1G19410.1 924 0.0 > Ahg472168 jgi|Araly1|472168|fgenesh2_kg.1__2122__AT1G19410.1 Length=1275 Score = 924 bits (500), Expect = 0.0 Identities = 734/838 (88%), Gaps = 51/838 (6%) Strand=Plus/Plus Query 1 ATGGAAAAGATCAATACTGATGACTTGCTGGTGAAGATTTTATCATTTCTTCCAACAAAA 60 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1 ATGGACAAGATCAATACTGATGACTTGCTGGTGAAGATATTATCATTTCTTCCAACAAAA 60 Query 61 GTTGCTGTGA-CCACTAGCATTTTGTCTAAACG-TGGAAGTTTC-TT---T--GGTTG-C 111 |||||||| | | |||||||||||||||||||| |||||||||| || | || || | Sbjct 61 GTTGCTGT-ATCAACTAGCATTTTGTCTAAACGATGGAAGTTTCATTGGATGCGGGTGCC 119 Query 112 ---G---G-GACATTGCCGCTACATAGAGTTCCGGTTTTGGAAAGCTTGCCTCTCAAGTT 164 | | ||||||||| || ||||||||||| ||||||||| |||||| |||| || | Sbjct 120 AAAGCTTGAGACATTGCCACTGCATAGAGTTCCCGTTTTGGAACGCTTGCGTCTCGAGCT 179 Query 165 TAGTACTTTACCATTTCAACCAGAAGATATCAAACTATGCGTTGAAGCTGCAGTTTCTCA 224 |||| |||||||||||||||||||||||||||||||||| ||||||| |||||| |||| Sbjct 180 TAGTTCTTTACCATTTCAACCAGAAGATATCAAACTATGGGTTGAAGTTGCAGTCTCTCT 239 Query 225 CTGTGTGCGGGAGCTTTTCATTGATTATTATCCTCATCCATACAAATTTGCTACATTGCC 284 || ||||| ||||||| |||||| |||||| |||||| |||||||| |||||||||||| Sbjct 240 CTCTGTGCTGGAGCTTAGCATTGACTATTATTCTCATCAATACAAATCTGCTACATTGCC 299 Query 285 ATTTTGCGTGTACACCTGCAAATCGCTCGAGACCCTTGCACTCTCTT-ATGCAATTCTCA 343 ||||||| |||||||||||||||||||||||||||| ||||||| || |||||||||||| Sbjct 300 ATTTTGCTTGTACACCTGCAAATCGCTCGAGACCCTCGCACTCT-TTGATGCAATTCTCA 358 Query 344 TGGTTGTTCCTCGTATGGCTTGTCTTCCATCTCTGAAAAACTTGCTACTACAAGGAGTGA 403 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 359 TGGTTGTTCCTCGTATGGCTTGTCTTCCATCTCTGAAAAACTTGCTACTATGTGGAGTGA 418 Query 404 GATACGTAGATGAATCTTTTCAACTACTCGATGAATCTCATACGGTTTGTTTTCCCTCCC 463 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 419 GATACGTAGATGAATCTTTTCAACTACTCGATGTATCTCGTACGGTTTGTTTTCCCTCCC 478 Query 464 TG-AAATCTTTGCACCTTAAAGAAGTAATCTCCTCCGATGAAAGATATCTTCGATCGCTT 522 || ||| ||||| ||||||||| ||| ||| ||||||||||| |||||| ||||||||| Sbjct 479 TGGAAA-CTTTGTTCCTTAAAGACGTAGTCTTCTCCGATGAAAAATATCT-CGATCGCTT 536 Query 523 CTTGCCAATTGCCCTGTTCTTGAAGAATTGGTCATGGAACTAGATGAATATGATACTTTG 582 |||||||||||||||| ||||||| | ||||||||||||||| |||||||||||||| || Sbjct 537 CTTGCCAATTGCCCTGATCTTGAATATTTGGTCATGGAACTACATGAATATGATACTATG 596 Query 583 GGAGCTGTCCACATCATTGTACCGTCTTTGAAGAGTTTATCATTAGATATAGATTGTGAT 642 |||||| | | ||| | | | | | || || | ||| | | | | || Sbjct 597 GGAGCTTT-----T-ATT--A---T-T---A-G--TT-AT-A---GAT-T-G-T-G--AT 627 Query 643 CGTTCTTCCAATGTAGTTGAAATTGTCGCTCCTTCTTTGGAGTACATCAAACTAAATGAT 702 | |||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 628 CATTCTCCCGATGTGGTTGAAATTGTTGCTCCTTCTTTGGAGTACATCAAACTAAATGAT 687 Query 703 CACAGCGACAATAAATTCTTGATAGAGAATATGCCTAAGCTTGAAGAGGCATACATTGAT 762 |||| | ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 688 CACAACAACAATAAATTCTTGATAGAGAATATGCCTAATCTTGAAGAGGCATACATTGAT 747 Query 763 GCTAATATCTTTGAATATGAGAAATTTCTTGGAGCTTTCACATCTGTTAAGCGTCTAA 820 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 748 GCTAATATCTTTGAATGCGAGAAATTTCTTGGAGCTTTCACATCTGTTAAGCGTCTAA 805 Score = 418 bits (226), Expect = 5e-116 Identities = 282/309 (91%), Gaps = 4/309 (1%) Strand=Plus/Plus Query 949 TGTACTTGTAAACCATATTGGTCGATAATACTTCTCCGGTTGCTCAAAGGATCTCCTAAT 1008 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 856 TGTACTTGTAAACCATATTGGTCGGTAATACTTCTCCGGTTGCTCAAAGGATCTCCTAAT 915 Query 1009 CTAAAAGTCCTTGAGCTC-ACAG--ACAATAAAATGCCATTGTGTTTTAAGGATCCACTG 1065 ||||||||||| ||| | || | ||||||| || || |||||||||| ||||||| Sbjct 916 CTAAAAGTCCTAGAGGTTGACGGCGACAATAATATTCCCGAATGTTTTAAGGCTCCACTG 975 Query 1066 GTTTGCTGGGATCAAGTGACACCTGTGCCTGAATGTTTGCTGACTAGTCTAGAGACTTTC 1125 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 976 GTTTGCTGGGATCAAGTGACACCTGTGCCAGAATGTTTGCTGACGAGTCTAGAGACTTTC 1035 Query 1126 AAGTGGACAGACTTACCACCAAGACAAGAAGCGAGAGATATGCGAACAGTTTTGGTTCTG 1185 |||||||||| | ||||| ||||||||||||||||||||||||||||||||||| | ||| Sbjct 1036 AAGTGGACAGGCATACCATCAAGACAAGAAGCGAGAGATATGCGAACAGTTTTGATCCTG 1095 Query 1186 AAAAACGAAATGGTAAAACTTTTAGACGATAAGATCGTTAGGTCAGAAAGAAAAGAACAC 1245 ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1096 AAAGACGAAATGGTAAAACTTTTAAACGATAAGATCGTTAGGTCAGAAAGAAAAGAAT-C 1154 Query 1246 ATCATCTTC 1254 ||| ||||| Sbjct 1155 ATCTTCTTC 1163 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 48911702511 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5