BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19440.1
Length=1948
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472173 jgi|Araly1|472173|fgenesh2_kg.1__2127__AT1G19440.1 2940 0.0
> Ahg472173 jgi|Araly1|472173|fgenesh2_kg.1__2127__AT1G19440.1
Length=1860
Score = 2940 bits (1592), Expect = 0.0
Identities = 1791/1884 (95%), Gaps = 26/1884 (1%)
Strand=Plus/Plus
Query 4 TTTTGGTGGGTCTTCGTCAAAGCTCTCTCCTTTACGGTCCTTTTCTCCAGCGC-ATGA-A 61
||||| |||||||||||||||| | |||||||||| ||||||||| ||||||| | | |
Sbjct 1 TTTTGTTGGGTCTTCGTCAAAGTTGTCTCCTTTACCGTCCTTTTCACCAGCGCAACAATA 60
Query 62 ATAATAAAGGACACCTGTATTTATTAAAATCACTACATTTTCCGTAACaaaaaaaaTCAA 121
| |||||| ||||||||| || |||||||| | |||||||||| | |
Sbjct 61 AAAATAAACAACACCTGTAATTGTTAAAATCGCAACATTTTCCG------------T--A 106
Query 122 ACTTTGTTTTCTCAATGGACGGTGCCGGAGAATCACGACTCGGTGGTGATGGTGGTGGTG 181
| ||| ||||||||||||| |||||||||||| ||||| | | |||||||||||
Sbjct 107 A-------TTCACAATGGACGGTGCTGGAGAATCACGAGTCGGT-G-G-TGGTGGTGGTG 156
Query 182 ATGGTTCTGTTGGAGTTCAGATCCGACAAACACGGATGCTACCGGATTTTCTCCAGAGCG 241
||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 157 ATGGTTCTGTTGGGGTACAGATCCGACAAACACGGAGGCTACCGGATTTTCTCCAGAGCG 216
Query 242 TGAATCTCAAGTATGTGAAATTAGGTTACCATTACTTAATCTCAAATCTCTTGACTCTCT 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 TGAATCTCAAGTATGTGAAATTAGGTTACCATTACTTAATCTCAAATCTCTTGACTCTCT 276
Query 302 GTTTATTCCCTCTCGCCGTTGTTATCTCCGTCGAAGCCTCTCAGATGAACCCAGATGATC 361
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 277 GTTTATTCCCTCTCGCCGTTGTTATCTCCGTCGAAGCTTCTCAGATGAACCCAGACGATC 336
Query 362 TCAAACAGCTCTGGATCCATCTACAATACAATCTGGTTAGTATCATCATCTGTTCAGCGA 421
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 337 TCAAACAGCTCTGGATCCATCTCCAATACAATCTGGTTAGTATCATCATCTGTTCCGCGA 396
Query 422 TTCTAGTCTTCGGGTTAACGGTTTATGTTATGACCCGACCTAGACCCGTTTACTTGGTTG 481
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 397 TTCTAGTCTTCGGATTAACGGTTTATGTTATGACCCGACCTAGACCCGTTTACTTGGTTG 456
Query 482 ATTTCTCTTGTTATCTCCCACCTGATCATCTCAAAGCTCCTTACGCTCGGTTCATGGAAC 541
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 457 ATTTCTCCTGTTATCTCCCACCTGATCACCTCAAAGCTCCTTACGCTCGGTTCATGGAAC 516
Query 542 ATTCTAGACTCACCGGAGATTTCGATGACTCTGCTCTCGAGTTTCAACGCAAGATCCTTG 601
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 517 ATTCTAGACTCACCGGAGACTTCGATGACTCTGCTCTCGAGTTTCAACGCAAGATCCTCG 576
Query 602 AGCGTTCTGGTTTAGGGGAAGACACTTATGTCCCTGAAGCTATGCATTATGTTCCACCGA 661
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 577 AGCGTTCTGGTTTAGGGGAAGACACTTATGTCCCTGAAGCTATGCATTTTGTTCCACCTA 636
Query 662 GAATTTCAATGGCTGCTGCTAGAGAAGAAGCTGAACAAGTCATGTTTGGTGCTTTAGATA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 GAATTTCAATGGCTGCTGCTAGAGAAGAAGCTGAACAAGTCATGTTTGGTGCTTTAGATA 696
Query 722 ACCTTTTCGCTAACACTAATGTGAAACCAAAGGATATTGGAATCCTTGTTGTGAATTGTA 781
|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 697 ACCTTTTCGCTAACACTAGTGTGAATCCAAAGGATATTGGAATCCTTGTTGTGAATTGTA 756
Query 782 GTCTCTTTAATCCAACTCCTTCGTTATCTGCAATGATTGTGAACAAGTATAAGCTTAGAG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 757 GTCTCTTTAATCCAACTCCTTCGTTATCTGCAATGATTGTGAACAAGTATAAGCTTAGAG 816
Query 842 GTAACATTAGAAGCTACAATCTAGGCGGTATGGGTTGCAGCGCGGGAGTTATCGCTGTGG 901
|||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||
Sbjct 817 GTAACATTAGAAGCTACAATCTCGGCGGTATGGGTTGTAGTGCGGGAGTTATCGCTGTGG 876
Query 902 ATCTTGCTAAAGACATGTTGTTGGTACATAGGAACACTTATGCGGTTGTTGTTTCTACTG 961
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 877 ATCTTGCTAAAGACATGTTGTTGGTTCACAGGAACACTTATGCGGTTGTTGTTTCTACTG 936
Query 962 AGAACATTACTCAGAATTGGTATTTTGGTAACAAGAAATCGATGTTGATACCGAACTGCT 1021
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 937 AGAACATTACTCAGAACTGGTATTTCGGTAACAAGAAATCGATGTTGATACCGAACTGCT 996
Query 1022 TGTTTCGAGTTGGTGGCTCTGCGGTTTTGCTATCGAACAAGTCGAGGGACAAGAGACGGT 1081
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 997 TGTTTCGAGTTGGTGGCTCTGCTGTTTTGCTATCGAACAAGTCGAGGGACAAAAGACGGT 1056
Query 1082 CTAAGTACAGGCTTGTACATGTAGTCAGGACTCACCGTGGAGCAGATGATAAAGCTTTCC 1141
|||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1057 CTAAGTACAGACTTGTGCATGTTGTCAGGACTCACCGTGGAGCAGATGATAAAGCTTTCC 1116
Query 1142 GTTGTGTTTATCAAGAGCAGGATGATACAGGGAGAACCGGGGTTTCGTTGTCGAAAGATC 1201
|||| ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1117 GTTGCGTTTATCAAGAACAGGATGATACAGGGAGAACCGGGGTTTCTTTGTCGAAAGATC 1176
Query 1202 TAATGGCGATTGCAGGGGAAACTCTCAAAACCAATATCACTACATTGGGTCCTCTTGTTC 1261
||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1177 TAATGGCTATTGCAGGGGAAACTCTTAAAACCAATATCACTACATTGGGTCCTCTTGTTT 1236
Query 1262 TACCGATAAGTGAGCAGATTCTCTTCTTTATGACTCTAGTTGTGAAGAAGCTCTTTAACG 1321
|||||||||| ||||||||||||||||||| |||||||||||||||||| || |||||||
Sbjct 1237 TACCGATAAGCGAGCAGATTCTCTTCTTTACGACTCTAGTTGTGAAGAAACTTTTTAACG 1296
Query 1322 GTAAAGTGAAACCGTATATCCCGGATTTCAAACTTGCTTTCGAGCATTTCTGTATCCATG 1381
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1297 GTAAAGTTAAACCGTATATCCCGGATTTCAAACTTGCTTTCGAGCATTTCTGTATCCATG 1356
Query 1382 CTGGTGGAAGAGCTGTGATCGATGAGTTAGAGAAGAATCTGCAGCTTTCACCAGTTCATG 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 CTGGTGGAAGAGCTGTGATCGATGAGTTAGAGAAGAATCTGCAGCTTTCACCAGTTCATG 1416
Query 1442 TCGAGGCTTCGAGGATGACTCTTCATCGATTTGGTAACACATCTTCGAGCTCCATTTGGT 1501
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1417 TCGAGGCTTCGAGGATGACTCTTCATCGATTTGGGAACACATCTTCAAGCTCCATTTGGT 1476
Query 1502 ATGAATTGGCTTACATTGAAGCGAAGGGAAGGATGCGAAGAGGTAATCGTGTTTGGCAAA 1561
|||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||
Sbjct 1477 ATGAATTGGCTTACATTGAAGCCAAAGGAAGGATGCGAAGAGGTAATCGCGTTTGGCAAA 1536
Query 1562 TCGCGTTCGGAAGTGGATTTAAATGTAATAGCGCGATTTGGGAAGCATTAAGGCATGTGA 1621
||||||| || |||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1537 TCGCGTTTGGGAGTGGATTTAAATGTAATAGCGCGATATGGGAAGCATTAAGACATGTGA 1596
Query 1622 AACCTTCGAACAACAGTCCTTGGGAAGATTGTATTGACAAGTATCCGGTAACTTTAAGTT 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1597 AACCTTCGAACAACAGTCCTTGGGAAGATTGTATTGACAAGTATCCGGTAACTTTAAGTT 1656
Query 1682 ATTAGCTTCGTTTGAGGAACTGTTATTGTGTAACTTCGAGACTAATCCATGGTTGttttt 1741
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1657 ATTAGCTTCGTTTGAGGAACTGTTATTGTGTAACTTGGAGACTAATCCATGGTTGTTTTT 1716
Query 1742 ttCTTAGAGAAGAAACCCTTAGATTTGATCTCTGACAATGTCAATGTGTTTGTTGTTTAT 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1717 TTCTTAGAGAAGAAACCCTTAGATTTGATCTCTGACAATGTCAATGTGTTTGTTGTTTAT 1776
Query 1802 GTGTTTTGGAGAGTTTGTGATATTTGAGTTACAGTTCTTGAGCTCATGTTTTCAGATCTT 1861
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GTGTTTTGGAGATTTTGTGATATTTGAGTTACAGTTCTTGAGCTCATGTTTTCAGATCTT 1836
Query 1862 AGATGTGTAATGACGAAATCACAG 1885
||||||||||||||||||||||||
Sbjct 1837 AGATGTGTAATGACGAAATCACAG 1860
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73209450890
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5