BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19450.1
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472174 jgi|Araly1|472174|fgenesh2_kg.1__2128__AT1G19450.1 2765 0.0
Ahg926902 jgi|Araly1|926902|scaffold_202463.1 1519 0.0
> Ahg472174 jgi|Araly1|472174|fgenesh2_kg.1__2128__AT1G19450.1
Length=1896
Score = 2765 bits (1497), Expect = 0.0
Identities = 1806/1946 (93%), Gaps = 57/1946 (3%)
Strand=Plus/Plus
Query 1 GGAAAACTATGAAACAGTCTGCGTCTCTCCACGCAAAGGCTCAATTTTTACAAACCATGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1 GGAAAACTATGAAACAGTCTGCGTCTCTCCACGCAAAGGCTCAATTTTTATAAACCATGA 60
Query 61 AGAATTCTTAAGCAAAACAAGTCTAACATCTTTTTGAATTCACCCA-AAACTCAAATCCT 119
|||||| || |||||| || || | | ||| || || | || |
Sbjct 61 AGAATT-TT----TAAACAA-TC-AA-A-CAAAAAGAAGTC-GACATCTTTTTGAA-CAA 109
Query 120 ACCTCAAATTTCGTATTTTTCTTCTTCTGCATTTTCTAGTTTAGGATCGACATTTTTATC 179
|||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 110 ACCTCAAATTTCGT-TTTTT-TTCTTCTGCATTTTCTAGTTTAGGATCAACATTTTTAT- 166
Query 180 CTCCGA-AAGATTC-G-TGCTTTTTTCTCTCTGTAGATTACGATTGTTTTGTAGATTTAA 236
||| || ||| | | | | ||| | ||||||||||||||||||||||||||||| |
Sbjct 167 CTCAGACCCTTTTCGGATTCGTCTTT-T-TCTGTAGATTACGATTGTTTTGTAGATTT-A 223
Query 237 GAAAAACAAAAAGATGAGTTTTAGGGATGATAATACGGAAGAGGGAAGAAATGATCTTCG 296
| | |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 224 G--CGATAAAAAGATGAGTTTTAGGGATG---ATACGGAAGAGGGAAGAAATGATCTTCG 278
Query 297 GCGACCGTTCTTACACACAGGAAGTTGGTATCGGATGGGTTCGAGACAATCTAGTATGTT 356
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 279 GCGACCGTTCTTACACACCGGAAGTTGGTATCGGATGGGTTCGAGACAATCTAGTATGTT 338
Query 357 GGAATCGTCTCAAGTTATTCGAGACAGCTCAATTTCTGTCTTAGCTTGTGTTTTGATTGT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 GGAATCGTCTCAAGTTATTCGAGACAGCTCAATTTCTGTCTTAGCTTGTGTTTTGATTGT 398
Query 417 TGCTCTTGGTCCTATTCAATTCGGATTCACTTGTGGTTATTCCTCACCAACTCAAGCTGC 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 399 TGCTCTTGGTCCTATTCAATTCGGATTCACTTGTGGTTATTCCTCACCAACTCAAGCTGC 458
Query 477 CATTACTAAGGATCTTGGTTTAACTGTATCAGAGTACTCTGTGTTTGGGTCTCTATCCAA 536
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 459 CATTACTAAGGATCTTGGTTTAACTGTATCAGAGTACTCTGTCTTTGGGTCTCTATCCAA 518
Query 537 TGTGGGTGCTATGGTTGGAGCAATTGCGAGTGGTCAGATTGCTGAATACGTTGGACGGAA 596
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 519 TGTGGGTGCTATGGTTGGAGCAATTGCAAGTGGTCAGATTGCTGAATACATTGGACGGAA 578
Query 597 AGGGTCTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTCGATATCATTTGC 656
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 579 AGGGTCTTTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTTCGATATCATTTGC 638
Query 657 AAAAGATACTTCTTTTCTTTACATGGGAAGATTGTTAGAAGGCTTCGGAGTTGGGATTAT 716
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 639 AAAAGATACTTCTTTTCTTTACATGGGAAGATTGTTAGAAGGTTTCGGCGTTGGGATAAT 698
Query 717 CTCCTATACGGTTCCCGTATATATAGCTGAGATCGCTCCACAG-ACCATGAGAGGAGCCT 775
||| |||||||| ||||| |||||||||||||||||||||||| || |||||||||||||
Sbjct 699 CTCTTATACGGTGCCCGTGTATATAGCTGAGATCGCTCCACAGCAC-ATGAGAGGAGCCT 757
Query 776 TAGGTTCAGTTAACCAGCTTTCTGTAACAATTGGGATAATGCTGGCGTATTTACTCGGTC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 TAGGTTCAGTTAACCAGCTTTCTGTAACAATTGGGATAATGCTGGCGTATTTACTCGGTC 817
Query 836 TCTTTGTTCCATGGAGAATTCTTGCAGTTTTGGGAGTATTGCCATGTACATTGTTGATAC 895
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 818 TCTTTGTTCCATGGAGAATTCTTGCTGTTTTGGGAGTATTGCCATGTACATTGTTGATAC 877
Query 896 CGGGTCtttttttCATTCCTGAATCTCCTCGGTGGTTGGCAAAGATGGGTTTGACAGATG 955
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 878 CGGGTCTGTTTTTCATTCCTGAATCTCCTCGGTGGTTGGCAAAGATGGGGTTGACAGATG 937
Query 956 ATTTCGAAACTTCATTGCAAGTTCTTCGTGGATTTGAGACTGATATTACCGTTGAGGTTA 1015
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 938 ATTTCGAAACTTCATTGCAAGTTCTTCGTGGATTTGATACTGATATCACCGTTGAGGTTA 997
Query 1016 ATGAAATCAAGAGATCTGTGGCATCATCTAGCAAACGTTCTGCAGTTCGGTTTGTAGACC 1075
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 998 ATGAAATCAAGAGATCTGTGGCATCATCTGGCAAACGTTCTGCAATTCGGTTTGTAGACC 1057
Query 1076 TCAAGCGCAGGAGATACTATTTCCCACTGATGGTTGGTATAGGGCTGCTTGCACTTCAAC 1135
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1058 TCAAGCGCAGGAGATACTATTTCCCACTGATGGTTGGTATAGGGCTGCTTGTACTTCAAC 1117
Query 1136 AACTTGGAGGAATCAATGGTGTCTTGTTCTATTCGAGTACAATTTTTGAATCTGCAGGGG 1195
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 AACTTGGAGGAATTAATGGTGTCTTGTTCTATTCGAGTACAATTTTTGAATCTGCAGGGG 1177
Query 1196 TGACATCAAGTAATGTGGCGACATTTGGAGTTGGCGTTGTTCAGGTAGTGGCGACTGG-G 1254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1178 TGACATCAAGTAATGTGGCGACATTTGGAGTTGGCGTTGTTCAGGTAGTGGCGACTGCAG 1237
Query 1255 ATAGCGACATGGTTGGTGGATAAAGCAGGTCGTCGGCTTCTACTCATGATCTCTTCTATC 1314
||||||||||||||||||||||| |||||||||| ||||| ||||||||||| || |||
Sbjct 1238 -TAGCGACATGGTTGGTGGATAAATCAGGTCGTCGACTTCTGCTCATGATCTCATCCATC 1296
Query 1315 GGAATGACGATAAGCCTCGTGATTGTAGCAGTTGCATTTTACCTTAAGGAATTTGTATCA 1374
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1297 GGAATGACGATAAGCCTCGTGATTGTAGCAGTTGCATTTTATCTTAAGGAATTCATATCA 1356
Query 1375 CCTGATTCCAACATGTACAACATTCTAAGCATGGTTTCCGTAGTTGGAGTTGTGGCTATG 1434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 CCTGATTCCAACATGTACAACATTCTAAGCATGGTTTCCGTAGTTGGAGTTGTGGCTATG 1416
Query 1435 GTTATTTCTTGCTCTCTAGGAATGGGACCAATTCCATGGCTGATTATGTCTGAGATTCTG 1494
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1417 GTTATTTCATGTTCTCTAGGAATGGGACCAATTCCATGGCTGATTATGTCTGAGATTCTG 1476
Query 1495 CCAGTGAATATAAAGGGTTTAGCCGGAAGTATAGCAACTTTGTTAAACTGGTTCGTGTCA 1554
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1477 CCAGTGAATATAAAGGGTTTAGCCGGAAGTATAGCAACTTTGCTAAACTGGTTCGTGTCA 1536
Query 1555 TGGTTAGTGACAATGACTGCAAATATGCTGTTAGCATGGAGCAGTGGGGGAACTTTCACT 1614
||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct 1537 TGGTTAGTGACAATGACTGCAAATATGCTCTTAGCGTGGAGCAGTGGAGGAACTTTCACT 1596
Query 1615 CTCTACGCTTTGGTTTGTGGATTCACTGTGGTTTTTGTGAGTCTTTGGGTTCCTGAGACT 1674
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1597 CTATACGCTTTGGTTTGTGGATTCACTGTGGTCTTTGTGAGTCTTTGGGTTCCTGAGACT 1656
Query 1675 AAAGGAAAAACGCTTGAAGAGATCCAAGCTTTGTTCAGATGATCAAAACAAGAAGAGGAA 1734
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1657 AAAGGCAAAACGCTTGAAGAGATTCAAGCTTTGTTCAGATGATCAAAACAAGAAGA---- 1712
Query 1735 GAAGAAGACAAAATTTTCACTTTTTGCTTTCTCCATTACAGATCATTCTTTTG-TCCCTT 1793
|||| |||| || | | ||||||||||||||||||| ||||||
Sbjct 1713 -------------TTTTG-CTTT---CT--C-C-ATTACAGATCATTCTTTTGGTCCCTT 1751
Query 1794 CCCTGTGTCTGTATTTCATGCTTTGTTCAATGTATTTCTTCTTGACATTGATTATAATTT 1853
| ||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1752 CTCTGTGTCTGTATTTCTTGCTTTGTTCAATGTCTTTCTTTTTGACATTGATTATAATTT 1811
Query 1854 GTTTATCTTGTACAAGCATATCATTATACCtttaaatttgattttttgtttttgtgtgta 1913
||||||||||||||||||||||||| |||||||||||| || | | ||||| ||||||
Sbjct 1812 GTTTATCTTGTACAAGCATATCATTTTACCTTTAAATTCGACCCTCTATTTTT-TGTGTA 1870
Query 1914 atttttCGGATTCTCAAGATTAATAG 1939
||||| |||||| |||||||||||||
Sbjct 1871 ATTTTCCGGATTTTCAAGATTAATAG 1896
> Ahg926902 jgi|Araly1|926902|scaffold_202463.1
Length=1505
Score = 1519 bits (822), Expect = 0.0
Identities = 1273/1489 (85%), Gaps = 37/1489 (2%)
Strand=Plus/Plus
Query 245 AAAAGATGAGTTTTAGGGATGATAATACGGAAGAGGGAAGAAATGATCTT-CGGCGACCG 303
||||||||||||| || ||||||||| || ||||| || |||||| || || || |||
Sbjct 17 AAAAGATGAGTTTCAGAGATGATAAT---GAGGAGGGTAGGAATGAT-TTGCGACGGCCG 72
Query 304 TTCT-TACACACAGGAAGTTGGTATCGGATGGGTTCGAGACAATCTAGTATGTTGGAATC 362
|| | ||||||| ||||| ||||| ||||||||||||||||| || |||||| ||| ||
Sbjct 73 TT-TATACACACCGGAAGCTGGTACCGGATGGGTTCGAGACAGTCGAGTATGATGGGCTC 131
Query 363 GTCTCAAGTTATTCGAGACAGCTCAATTTCTG-TCTTAGCTTGTGTTTTGATTGTTGCTC 421
|||||||||||||||||||||||| || |||| |||| || ||||||||||| |||||||
Sbjct 132 GTCTCAAGTTATTCGAGACAGCTCTATCTCTGTTCTT-GCATGTGTTTTGATCGTTGCTC 190
Query 422 TTGGTCCTATTCAATTCGGATTCACTTGTGGTTATTCCTCACCAACTCAAGCTGCCATTA 481
||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |
Sbjct 191 TTGGTCCTATTCAATTCGGATTCACTTGTGGTTATTCATCTCCAACTCAAGCTGCAATCA 250
Query 482 CTAAGGATCTTGGTTTAACTGTATCAGAGTACTCTGTGTTTGGGTCTCTATCCAATGTGG 541
|||||||||| |||||||| ||||| ||||||||||| ||||| ||||| ||||||||||
Sbjct 251 CTAAGGATCTCGGTTTAACGGTATCTGAGTACTCTGTATTTGGTTCTCTGTCCAATGTGG 310
Query 542 GTGCTATGGTTGGAGCAATTGCGAGTGGTCAGATTGCTGAATACGTTGGACGGAAAGGGT 601
||||||||||||| |||||||| |||||||||||||| |||||| ||||||| |||||||
Sbjct 311 GTGCTATGGTTGGTGCAATTGCCAGTGGTCAGATTGCAGAATACATTGGACGAAAAGGGT 370
Query 602 CTCTGATGATTGCTGCAATTCCCAATATTATTGGATGGCTTT-CGATATCATTTGCAAAA 660
|||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||
Sbjct 371 CTCTGATGATTGCTGCAATTCCCAATATCATTGGATGGCTTTGC-ATATCATTTGCAAAT 429
Query 661 GATACTTCTTTTCTTTACATGGGAAGA-TTGTTAGAAGGCTTCGGAGTTGGGATTATCTC 719
|||||||||||||||||||||||| || || ||||||||||| || |||||||| |||||
Sbjct 430 GATACTTCTTTTCTTTACATGGGACGACTT-TTAGAAGGCTTTGGCGTTGGGATCATCTC 488
Query 720 CTATACGGTTCCCGTATATATAGCTGAGATCGCTCCACAGACCATGAGAGGAGCCTTAGG 779
|| || || || |||||||| || ||||| |||||||| | |||||||||| || ||
Sbjct 489 TTACACTGTACCTGTATATATCGCGGAGATAGCTCCACAAAATATGAGAGGAGGATTGGG 548
Query 780 TTCAGTTAACCAGCTTTCTGTAACAATTGGGATAATGCTGGCGTATTTACTCGGTCTCTT 839
||| ||||||||||||||||| |||||||| |||||| |||||||| |||| || |||||
Sbjct 549 TTCGGTTAACCAGCTTTCTGTGACAATTGGAATAATGTTGGCGTATCTACTTGGCCTCTT 608
Query 840 TGTTCCATGGAGAATTCTTGCAGTTTTGGG-AGTATTGCCATGTACATTGTTGATACCGG 898
||||||||||||||||||||||||| |||| | ||||||| || ||| | |||||||| |
Sbjct 609 TGTTCCATGGAGAATTCTTGCAGTTCTGGGGA-TATTGCCGTGCACAGTATTGATACCCG 667
Query 899 GTCtttttttCATTCCTGAATCTCCTCGGTGGTTGGCAAAGATGGGTTTGACAGATGATT 958
|||| |||||||| || ||||| ||||| ||| ||||||| |||||| ||||||||||||
Sbjct 668 GTCTCTTTTTCATCCCCGAATCCCCTCGCTGGCTGGCAAAAATGGGTATGACAGATGATT 727
Query 959 TCGAAACTTCATTGCAAGTTCTTCGTGGATTTGAGACTGATATTACCGTTGAGGTTAATG 1018
| ||||||||||| ||||||||||| ||||| |||||||||||||| ||||| |||||||
Sbjct 728 TTGAAACTTCATTACAAGTTCTTCGAGGATTCGAGACTGATATTACAGTTGAAGTTAATG 787
Query 1019 AAATCAAGAGATCTGTGGCATCATCTAGCAAA-CGTTCTGCAGTTCGGTTTGTAGACCTC 1077
||||||||||||||||||||||||||| |||| || | |||||||||||| ||| |||
Sbjct 788 AAATCAAGAGATCTGTGGCATCATCTA-CAAAGCGAAATACAGTTCGGTTTGCAGATCTC 846
Query 1078 AAGCGCAGGAGATACTATTTCCCACTGATGGTTGGTATAGGGCTGCTTGCACTTCAACAA 1137
|| ||||||||||||||||||||||| | ||||||||||||| |||||| ||||||||||
Sbjct 847 AAACGCAGGAGATACTATTTCCCACTTACGGTTGGTATAGGGTTGCTTGTACTTCAACAA 906
Query 1138 CTTGGAGGAATCAATGGTGTCTTGTTCTATTCGAGTACAATTTTTGAATCTGCAGGGGTG 1197
||||| ||||| ||||| ||| | |||||||| |||||||| |||||||||||||| ||
Sbjct 907 CTTGGTGGAATTAATGGCGTCCTATTCTATTCCAGTACAATATTTGAATCTGCAGGAGTT 966
Query 1198 ACATCAAGTAATGTGGCGACATTTGGAGTTGGCGTTGTTCAGGTAGTGGCGACTGGGATA 1257
||||| ||||| | || |||||||| || || | | |||||||||| || |||| |||
Sbjct 967 ACATCGAGTAACGCAGCAACATTTGGGGTCGGGGCTATTCAGGTAGTCGCTACTGCAATA 1026
Query 1258 GCGACATGGTTGGTGGATAAAGCAGGTCGTCGGCTTCTACTCATGATCTCTTCTATCGGA 1317
|||||||||||||||| |||||||||||||| ||||| || | |||||||| | ||
Sbjct 1027 TCGACATGGTTGGTGGACAAAGCAGGTCGTCGACTTCTGCTTACCATCTCTTCGGTTGGG 1086
Query 1318 ATGACGATAAGCCTCGTGATTGTAGCAGTTGCATTT-TACCTTAAGGAATTTGTATCACC 1376
||||| || ||||| || ||||| |||| ||| ||| |||||||||| |||||| || ||
Sbjct 1087 ATGACAATTAGCCTTGTAATTGTCGCAGCTGC-TTTCTACCTTAAGGGATTTGTGTCTCC 1145
Query 1377 TGATTCCA-ACATGTACAACATT--CTAAGCATGGTT-TCCGTAGTTGGAGTTGTGGCTA 1432
|||||| | |||||||||| || || ||||| || || ||||||||||||||||| |
Sbjct 1146 TGATTC-AGACATGTACAA--TTGGCTGAGCATA-TTGTCAGTAGTTGGAGTTGTGGCAA 1201
Query 1433 TGGTTATTTCTTGCTC-TCTAGGAATGGGACCAATTCCATGGCTGATTATGTCTGAGATT 1491
||||| |||||| ||| | | |||||||||||||| || ||||| ||||||||||||||
Sbjct 1202 TGGTTGTTTCTTTCTCAT-TGGGAATGGGACCAATACCGTGGCTCATTATGTCTGAGATC 1260
Query 1492 CTGCCAGTGAATATAAAGGGTTTAGCCGGAAGTATAGCAACTTT-GTTAAACTGGTTCGT 1550
|| || ||||| |||||||||||||| |||||||| |||||| | | || |||||| |
Sbjct 1261 CTTCCTGTGAACATAAAGGGTTTAGCTGGAAGTATTGCAACTCTAGCCAAT-TGGTTCTT 1319
Query 1551 GTCATGGTT-AGTGACAATGACTGCAAA-TATGCTGTTAGCATGGAGCAGTGGGGGAACT 1608
|| ||||| | | || ||||| ||||| | |||| ||||| ||||||||||| ||||||
Sbjct 1320 TTCTTGGTTGA-TCACTATGACAGCAAACT-TGCTCTTAGCCTGGAGCAGTGGAGGAACT 1377
Query 1609 TTCACTCTCTACGCTTTGGTTTGTGGATTCACTGTGGTTTTTGTGAGTCTTTGGGTTCCT 1668
|||||||| |||| |||||||||| |||||| ||||| || |||| ||| |||||||||
Sbjct 1378 TTCACTCTGTACGGGTTGGTTTGTGCATTCACAGTGGTGTTCGTGACTCTATGGGTTCCT 1437
Query 1669 GAGACTAAAGGAAAAACGCTTGAAGAGA-TCCAAGCTTTGTTCAGATGA 1716
||||| ||||| | ||| |||||||| | | ||||| ||||||||||||
Sbjct 1438 GAGACCAAAGGCAGAACTCTTGAAGA-ACTTCAAGCCTTGTTCAGATGA 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73399902115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5