BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19470.1
Length=1239
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312882 jgi|Araly1|312882|fgenesh1_pm.C_scaffold_1001662 621 4e-177
> Ahg312882 jgi|Araly1|312882|fgenesh1_pm.C_scaffold_1001662
Length=1104
Score = 621 bits (336), Expect = 4e-177
Identities = 399/430 (93%), Gaps = 2/430 (0%)
Strand=Plus/Plus
Query 1 ATGGTCAATATCTCTGAAATTCCCGACGACTCTAATGACGGCTGCGATCCAAACAAGAAA 60
||||| |||||||||||||||| |||||||||||| |||||| || ||||||||||||||
Sbjct 1 ATGGTTAATATCTCTGAAATTCTCGACGACTCTAACGACGGCGGCAATCCAAACAAGAAA 60
Query 61 CCAGAAGAACAAGTTTTGAGAAGAAGTagaagaatcgcgacaagaaacgagaatcaaaac 120
||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 61 CCAGAAGAACAAGTTTTAAGAAGAAGTAGCCGAATCTCGACAAGAAACGAGAATCAAAAC 120
Query 121 aagaagcccaaggaggaagaagaagaagaTAATCGCTCGGTATCTTTTCCAATTCCAAAC 180
|||||||||||||| |||||| ||||||||||||||||| ||||||| ||||||||| ||
Sbjct 121 AAGAAGCCCAAGGAAGAAGAAAAAGAAGATAATCGCTCGATATCTTTCCCAATTCCAGAC 180
Query 181 GAGCTCACCGAAGCTTGCGTCGCACTCATCCGGAAATGTGATTACCCTAGTCTATCTTCC 240
|| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 181 GATCTCACCGAAGCTTGCGTCGCACTCATCCGGAGATGTGATTACCCTAGTCTGTCTTCC 240
Query 241 GTCTCAAGTTACTTTTTCAATCTCATCGCTTCGTCAGGACTCTACGAAACGCGTTCGCGC 300
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 241 GTCTCAAGTTACTTTTTCACTCTCATCGCTTCGTCAAGACTCTACGAAACGCGTTCGCGC 300
Query 301 CTCGGTCTTTCCGAAACCTTTCTTTACGCCGCCATCAAATTCCCTGA-CACAAATCCCGC 359
||||||||||| ||||||||||||||||||||||| ||||||||||| || | |||| |
Sbjct 301 CTCGGTCTTTCTGAAACCTTTCTTTACGCCGCCATTAAATTCCCTGATGAC-ATTCCCCC 359
Query 360 AAACTGGTACATTCTCCATCGAAACAAGGTTTCTTCTTTACGTCTGACGGAAGTCGGTTC 419
||| ||||||||||||||||||||||||||||||||||||||| |||||||| || | ||
Sbjct 360 AAAATGGTACATTCTCCATCGAAACAAGGTTTCTTCTTTACGTTTGACGGAACTCAGCTC 419
Query 420 ACTTCCACCT 429
||||||||||
Sbjct 420 ACTTCCACCT 429
Score = 448 bits (242), Expect = 6e-125
Identities = 303/331 (92%), Gaps = 9/331 (3%)
Strand=Plus/Plus
Query 916 CGTACTCTTGGACATCC---A--ATAGTCGTGTATCATCCAAAGGACAAGACTTGGAGAC 970
||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||
Sbjct 776 CGTACTCTTGGACATCCAATAGTATAGTCGTGTATGATCCAAAGGACAAGACTTGGAGAC 835
Query 971 CTGTGAAAGGTGAATCCTTGTGG-AGTTTGCCTAGTTATTTCTTTTCTAAGTCTGAAATG 1029
|||||||||||||||| ||| || || |||||||||||| ||||| |||||||||||||
Sbjct 836 CTGTGAAAGGTGAATCTTTG-GGAAGATTGCCTAGTTATCTCTTTGATAAGTCTGAAATG 894
Query 1030 GCGAATTTTGGTGGAAAGTTGGTGATTTTGGGCAGTAACAAGAGCTATGTTACTGGTGAT 1089
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 895 GCGAATTTTGGTGGAAAGTTGGTGATTTTGGGTAGTAACGAGAGCTATGTTACTGGTGAT 954
Query 1090 TGCATTGGAGAAAAAGGTATTTGGTGCGTAATGATCGAGTTGGAAAAACGTGAAGGAGGT 1149
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 955 TGCATTGGGGAAAAAGGTATTTGGTGCGTAATGATCGCGTTGGAAAAACGTGAAGGAGAA 1014
Query 1150 GAGATTTGGGGGAAGGTTGAATCACTCGACTGTGTGCTTGGAGACATAAACTTTCTG-TC 1208
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1015 GAGATTTGGGGGATGGTCGAATCACTCGACTGTGTGCTTGGAGACATAAACTTTCTGAT- 1073
Query 1209 GGTTCGGCTTTGTCAAACTCTGACCATTTGA 1239
|||| |||| |||| ||| |||||||||||
Sbjct 1074 GGTTAGGCTATGTCGAACAGTGACCATTTGA 1104
Score = 219 bits (118), Expect = 5e-56
Identities = 162/184 (88%), Gaps = 0/184 (0%)
Strand=Plus/Plus
Query 681 ACAGATTTGGGAATCTTTGCCTGGTCCGTACCCTAGAACTAGTGCGGGTTCCCAGTTTTC 740
||||| ||||||||||||||||||||||||||||| ||||||| |||||| | |||
Sbjct 579 ACAGAGTTGGGAATCTTTGCCTGGTCCGTACCCTAAAACTAGTTCGGGTTGCGAGTGGAA 638
Query 741 TGCACATGCGGTGATGGAAGACAAGTTATACATGTTGGGTTCTAAATTTTGTTTGGTTTA 800
|| ||| |||||||||||| ||||||||||| |||| |||||||||||||||||||||
Sbjct 639 AACATATGTGGTGATGGAAGAGAAGTTATACATTTTGGATTCTAAATTTTGTTTGGTTTA 698
Query 801 CGAACCAAAAAGAAACGGTGAATGGGACGCATCCGTCGGAGCAACCCCATTAAAAGATTT 860
|||||||||||||||| ||||||||||||||||||||||||||| || |||| |||||
Sbjct 699 CGAACCAAAAAGAAACATTGAATGGGACGCATCCGTCGGAGCAACTCCTTTAATGGATTT 758
Query 861 GTGG 864
||||
Sbjct 759 GTGG 762
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46281221238
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5