BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19485.1
Length=2586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911775 jgi|Araly1|911775|Al_scaffold_0001_2029 2518 0.0
> Ahg911775 jgi|Araly1|911775|Al_scaffold_0001_2029
Length=3789
Score = 2518 bits (1363), Expect = 0.0
Identities = 1558/1650 (94%), Gaps = 22/1650 (1%)
Strand=Plus/Plus
Query 76 TGGATGGAGAAGAATGTAATATATCACTGTTTGATTATTCTGCTGAGAGTCATCTAAAGG 135
||| || ||||||||||| ||||||||||||||||||||||| ||||| ||||||||| |
Sbjct 1251 TGG-TGAAGAAGAATGTACTATATCACTGTTTGATTATTCTGTTGAGAATCATCTAAAAG 1309
Query 136 CAGTGGAATCTATCACTGATTTATGTGGTGAAGCTAATGCTGATATTGATGAGAATGATA 195
||||||| ||||||| |||| | |||||||||||||||||||| ||||||||||||||||
Sbjct 1310 CAGTGGACTCTATCAGTGATCTCTGTGGTGAAGCTAATGCTGAAATTGATGAGAATGATA 1369
Query 196 TCAACATATTGTCATCATCAGTTACATTCTTGAGGGAATGGAGGCATTATAATTTCGAAC 255
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1370 TCAACACATTCTCATCATCAGTTACATTCTTGAGGGAATGGAGGCATTATAATTTCGAAC 1429
Query 256 CAAAGAGTTTTGCATTCTACAACGAGGCTGAGAAAAACCATCAACCAAAGGATATAAACA 315
|||||| ||||||||||||||||||||||| ||||| || | ||||||||||| ||||
Sbjct 1430 CAAAGATTTTTGCATTCTACAACGAGGCTGGGAAAAGCCGTGAACCAAAGGATGCAAACT 1489
Query 316 GTCAAACTTTGCCTCAATTTTCTTCCGCACGAGCTCCCAAGGTTAAGATACATGACGATG 375
|||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1490 GTCAAAATTTGCCTCAGTTTTCTTCGGCACGAGCTCCGAAGGTTAAGATACATGACGATG 1549
Query 376 -A--GTCATCATCATCTGGTGAAATCAGCAAGGACTTTGTGATGCATGTTGGAGGCTCTG 432
| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1550 AATCATCATCATCATCTGGTGAAATCAGCAAGGATTTTGTGATGCATGTTGGAGGCTCTG 1609
Query 433 TTTGGGCAATGGAGTGGTGTCCCAGAGTTCATGGGAATCCAGATGCTCAAGCTAAATGTG 492
|||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1610 TTTGGGCATTGGAGTGGTGTCCCAGAGTTCATGGAAATCCAGATGCTCAGGCTAAATGTG 1669
Query 493 AGTTTCTAGCTGTGGCTACTCATCCGCCTGACTCATACAGTCACAAGATTGGTATTCCTC 552
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1670 AGTTTCTAGCTGTGGCTACTCATCCGCCTGACTCATACAGTCACAAGATAGGTATTCCTC 1729
Query 553 TTATAGGTCGAGGCATCATTCAGATATGGTGCATTATAAATGCCACTTGCAAGAAAGATA 612
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 TTACAGGTCGAGGCATCATTCAGATATGGTGCATTATAAATGCCACTTGCAAGAAAGATA 1789
Query 613 GCGGCCAAGTTTCAGATAAGGGTAAAAAATTGACAGGAAAGTCTCGAAAACA-ACCATCT 671
|| ||| |||| || ||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 1790 GCACCCATTTTTCCGAGAAGAGTAAAAAATTGACAGGAAAGTCTCGAAAA-ATACCATCT 1848
Query 672 GGTGAAACTACTGAAACAACAGAACCTAAGAAGCCGAGAGGCAGGCCCAGAAAGCATCC- 730
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1849 GGTGAAACTACTGAAACAACAGAACCTAAGAAGCCGAGAGGCAGGCCCAGAAAGCATCCA 1908
Query 731 ----AG----TAGAGACAACAGAGCCTAAGAAACCAAGAGGTAGACCTAGAAAGAAGAGT 782
|| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1909 ATAGAGACAACAGAGACAACAGAGCCTAAGAAACCAAGAGGTAGACCTCGAAAGAAGAGT 1968
Query 783 ACTGCCGAGTTACCTGTTGAGCTTGATGATGACGTTCTGTACGTTGAAGCTCTGTCTGTT 842
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1969 ACTGCCGAGTTACCTGTTGAGCTTGATGATGGTGTTCTTTACGTTGAAGCTCTGTCTGTT 2028
Query 843 CGGTATCCAGAAAATTCAGTTGTTCCCGCAACTCCTCTTCGGATACTACGAGAAACTCCA 902
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 AGGTATCCGGAAAATTCAGTTGTTCCCGCAACTCCTCTTCGGATACTACGAGAAACTCCA 2088
Query 903 GTAACAGAAACTAAGGTCAACAATGAAGGTTCAGGACAAGTGTTGTCTTCGGACAATGCA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2089 GTAACAGAAACTAAGGTCAACAATGAAGGTTCAGGACAAGTGTTGTCTTCGGAAAATGCA 2148
Query 963 AATATCAAGCTTCCAGTACGGAGAAAGAGACAAAAAACCAAAAGT-ACTGAAGAAAGTTG 1021
|||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2149 AATATCAAGCTTCCTGTACGGAGAAAGAGACAAAAAACCAAA-GTTACTGAAGAAAGTTG 2207
Query 1022 CACACCCATGATATTAGAATATAGTGAAGCTGTTGGAAATGTACCGAGCAAACCGTCCTC 1081
|| ||||||| |||||||| |||||||||||||||||||||||||| || |||||||| |
Sbjct 2208 CAAACCCATGCTATTAGAAAATAGTGAAGCTGTTGGAAATGTACCGGGCGAACCGTCCCC 2267
Query 1082 TGGTATTTCTGAAGACATAGTAGCTCTTCCAAGGGTTGTCTTATGCCTGGCCCACAATGG 1141
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2268 AGGTATTTCTGAAGACATAG---CTCTTCCAAGGGTTGTCTTATGCCTGGCCCACAATGG 2324
Query 1142 AAAAGTTGTCTGGGATATGAAATGGCGTCCCTCATATGCGGGTGATTCTCTTAATAAGCA 1201
|||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 2325 AAAAGTTGCCTGGGATATGAAATGGCGTCCCTCATATGCCGATGATTCTCTTAATAAGCA 2384
Query 1202 TAGTATGGGATATTTAGCTGTCTTGCTGGGGAATGGATCTCTGGAAGTGTGGGATGTTCC 1261
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2385 CAGAATGGGATATTTAGCTGTCTTGCTGGGGAATGGATCTCTGGAAGTGTGGGATGTTCC 2444
Query 1262 AATGCCT-AAGGCAACATCAGCTCTATATTTATCATCAAAGAAAGCTGCGACTGATCCCC 1320
||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2445 AATGCCTCAAG-CAACATCAGCTCTATATTTATCTTCAAAGAAAGCTGCGACTGATCCCC 2503
Query 1321 GTTTTGTGAAACTGGCTCCCGTTTTCAAATGTTCAAACTTGAAGTGTGGCGACACAAAGA 1380
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 2504 GTTTTGTGAAACTGGCTCCCGTTTTCAGATGTTCAAACTTGAAGTGTGGCGATACAAAGA 2563
Query 1381 GTATTCCTTTGACAGTTGAATGGTCGACTTTAGGGAACCCTGATTTCTTACTGGCTGGTT 1440
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2564 GTATTCCTTTGACAGTTGAATGGTCGACTTCAGGGAACCCTGATTTCTTACTGGCTGGTT 2623
Query 1441 GCCACGATGGCACGGTTGCTCTCTGGAAGTTTTCTACAACCAAATCTTCAGAAGATACAA 1500
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2624 GCCACGATGGCACGGTTGCTCTCTGGAAGTTTTCTACAACTAAATCTTCAGAAGATACAA 2683
Query 1501 GACCTTTACTTTTCTTCAGCGCAGATACAGCTCCTATTAGGGCAGTTGCATGGGCTCCTG 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2684 GACCTTTACTTTTCTTCAGCGCAGATACAGCTCCTATTAGGGCAGTTGCATGGGCTCCTG 2743
Query 1561 GTGAAAGTGATCAGGAAAGTGCAAACATAGTAGCAACTGCTGGACATGCTGGTCTGAAGT 1620
|||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| ||||
Sbjct 2744 GTGAAAGTGATCAGGAAAGTACAAACATAGTAGCTACTGCTGGACATGCAGGTCTAAAGT 2803
Query 1621 TTTGGGACTTACGTGATCCGTTCCGTCCTCTGTGGGATTTGCACCCAGTACCAAGGTTTA 1680
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2804 TTTGGGACTTACGTGATCCGTTCCGTCCTTTATGGGATTTGCACCCAGTACCAAGGTTTA 2863
Query 1681 TTTACAGCCTTGATTGGTTACAAGATCCAA 1710
||||||||||||||||||||||||||||||
Sbjct 2864 TTTACAGCCTTGATTGGTTACAAGATCCAA 2893
Score = 1190 bits (644), Expect = 0.0
Identities = 755/808 (93%), Gaps = 9/808 (1%)
Strand=Plus/Plus
Query 1713 TGCGTTCTATTGTCCTTTGATGATGGAACATTAAGAATCCTAAGCTTGGTGAAGGTTGCG 1772
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2989 TGCGTTTTATTGTCCTTTGATGATGGAACATTAAGAATCCTAAGCTTGGTGAAGGTTGCG 3048
Query 1773 TATGATGTTCCTGCTACTGGAAGGCCTTATCCTAATACAAAACAGCAAGGGTTAAGCGTT 1832
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 3049 TATGATGTTCCTGCTACTGGAAGGCCTTACCCTAACACAAAACAGCAAGGGTTAAGCGTT 3108
Query 1833 TATAACTGTTCAACTTTTCCCATCTGGAGTATTCAAGTATCAAGGCTAACAGGCATAGCA 1892
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 3109 TATAACTGTTCAACTTTTCCCATATGGAGTATTCAAGTATCAAGGCTAACAGGAATAGCA 3168
Query 1893 GCGTATTGCACTGCAGATGGGTCCATTTTCCATTTCGAGCTTACGACCAAAGCAGTGGAA 1952
|| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3169 GCCTATTGCACTGGGGATGGGTCGATTTTCCATTTCGAGCTTACGACCAAAGCAGTGGAA 3228
Query 1953 AAAGACACGAGAAATCGGACTCCACACTATCTCTGTGGACAGTTGACAATGAAAGATTCC 2012
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 3229 AAAGACACGAGAAATCGGACTCCACACTTTCTCTGTGGACAATTGACAATGAAAGATTCC 3288
Query 2013 ACCTTCATAGTGCATAGTCCAGTTCCAGACATCCCGATCGTATTGAAGAAACCAGTTGGT 2072
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3289 ACCTTTATAGTGCATAGTCCAGTTCCAGACATCCCGATCGTATTGAAGAAACCGGTTGGT 3348
Query 2073 GAGACCGGTGAAAAACAGAGATGCCTTCGAAGTCTCTTGAACGAATCTCCTAGCCGATAT 2132
||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||||
Sbjct 3349 GAGACCGGTGAAAAACAGAGATGCCTTCGAAGTCTTTTGAATGAATCTCCTAACCGATAC 3408
Query 2133 GCATCTAACGTTTCAGATGTTCAGCCTCTAGCTTTTGCACACGTTGAGGATCCAGGTTTA 2192
|||||||| |||||||||||||||||||| ||||||| ||||| |||||||||||||||
Sbjct 3409 GCATCTAATGTTTCAGATGTTCAGCCTCTTGCTTTTGGACACGAAGAGGATCCAGGTTTA 3468
Query 2193 GAGTCTGAATCCGAAGGAACAAATAACAAAGCAGCAAAATCAAAGGCTAAAAAAGGAAAG 2252
|||||||||| |||||||||||| ||||||||| |||| |||||| ||||||| |||| |
Sbjct 3469 GAGTCTGAATTCGAAGGAACAAACAACAAAGCACCAAAGTCAAAGTCTAAAAAGGGAAGG 3528
Query 2253 AACAACGCAAGAGCAGAGGAGGACGAGAACAGCAGAGCACTGGTCTGTGTCAaagaagat 2312
|| ||| ||| | || ||||||||||| |||| ||| |||||||||| |||||||||
Sbjct 3529 AAGAACATTGGAG-A-AG-AGGACGAGAACCGCAGGGCATTGGTCTGTGTTAAAGAAGAT 3585
Query 2313 ggcggagaagaagaaggaagaagaaaagCAGCTAGCAACAATAGCAATGGAATGAAAGCA 2372
|||||||||| |||| ||||| || | ||||||||||||||||||||||||||||| |
Sbjct 3586 GGCGGAGAAG--GAAG-AAGAA-AAGA--AGCTAGCAACAATAGCAATGGAATGAAAGTA 3639
Query 2373 GAAGGGTTCCCGCCTAAAATGGTGGCGATGCATCGTGTGCGGTGGAACATGAATAAAGGA 2432
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3640 GAAGGGTTCCCGCCTAAAATGGTGGCGATGCATCGCGTGCGGTGGAACATGAATAAAGGA 3699
Query 2433 AGTGAGAGATGGTTATGTTATGGTGGAGCCGCCGGGATTGTTCGGTGTCAAGAGATTGCT 2492
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 3700 AGTGAGAGATGGTTATGTTACGGTGGAGCCGCCGGGATTGTTCGGTGTCAAGAGATTGCT 3759
Query 2493 CCAACCTCAGATTGGAAACCTCGGAGAT 2520
||||||||| |||||||||||| |||||
Sbjct 3760 CCAACCTCAAATTGGAAACCTCAGAGAT 3787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97511027200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5