BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19490.1
Length=1736
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312884 jgi|Araly1|312884|fgenesh1_pm.C_scaffold_1001664 2073 0.0
> Ahg312884 jgi|Araly1|312884|fgenesh1_pm.C_scaffold_1001664
Length=1944
Score = 2073 bits (1122), Expect = 0.0
Identities = 1321/1413 (93%), Gaps = 30/1413 (2%)
Strand=Plus/Plus
Query 47 TTGGAGCCTATATCATCGAGTTGTTGCTCGTCGTCTTCTTCTTCTTCTGGGGAGGAGAAT 106
|||||||||||||||||||||||||| | ||| |||||||| |||||||||||| |
Sbjct 559 TTGGAGCCTATATCATCGAGTTGTTG--C-TCG---TCTTCTTCGTCTGGGGAGGAGGGT 612
Query 107 ACTGCGGCGGCGAACATGACGGAGATGGAGGCGGCAGAAGCATTGGCGGATTTAGCGCAG 166
|| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 613 ACGGCGGCGGCGAATATGACGGAGATGGAGGCGGCAGAGGCATTGGCGGATTTAGCGCAG 672
Query 167 CTTGCGATAATGCGAGAGCAGGTTTTCGAATCTGCAGCGAGTTGGGGAAGTAAAGGGAAA 226
|||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 673 CTTGCGATAATGCGAGAGCAGGTTTTCGAATCCGCGGCGAGTTGGGGAAGTAAAGGAAAA 732
Query 227 CGGGTGAGGAAGCGAGTCAAGACTGAGTCTCCTCCTTCTGACTCGCTTTTGAAACCACCT 286
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 733 CGAGTGAGGAAGCGAGTCAAGACTGAGTCTCCTCCGTCTGACTCGCTTTTGAAACCACCT 792
Query 287 GACTCTGATACGTTACCTACTCCGGATCTAGCTGAGGAACGATTAGTgaaagaagaagag 346
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 793 GACTCTGAAACGTTACCTACTCCGGATCTAGCTGAGGAACGATTAGTGAAAGAAG-A-A- 849
Query 347 gaagaagaagaagTTGAACCAATAACTAAAGAACTAACTAAAGCTCCGGTTAAATCTGAA 406
||||||||||||||| | ||| || |||||||||||||||||||| |||||
Sbjct 850 GAAGAAGAAGAAGTT----C---AAC----CAA-TAACTAAAGCTCCGGTTAAAACTGAA 897
Query 407 ATCAATGGTGAAACACCTAAACCAATTCTTGCTTCGACTCTAATAAGGTGTAGTAGATCA 466
|| ||||||||||||||||||| || ||||||||| || || | |||||||||||||||
Sbjct 898 ATGAATGGTGAAACACCTAAACTAAATCTTGCTTCTACACT--T-AGGTGTAGTAGATCA 954
Query 467 AATGGTTGTGGCCGATCAAGACAGAATTTAAGTGAGGCTGAAAGAGAAGAACGTAGAATC 526
||||| ||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 955 AATGGCTGTGGCCGATCGAGGCATAATTTAAGTGAGGCTGAAAGAGAAGAACGTAGAATC 1014
Query 527 AGAAGGATATTAGCTAATAGAGAATCTGCGAGGCAGACAATTCGGCGAAGACAGGCAATG 586
|||| || |||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1015 CGAAGAATTTTAGCTAACAGAGAATCTGCGAGGCAGACAATTCGACGAAGACAGGCAATG 1074
Query 587 TGTGAGGAGTTGAGTAAAAAAGCAGCTGATCTGACATATGAGAATGAGAATTTGAGGAGG 646
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TGCGAGGAGTTGAGTAAAAAAGCAGCTGATCTGACATATGAGAATGAGAATTTGAGGAGG 1134
Query 647 GAAAAGGATTGGGCTTTGAAAGAGTTTCAGTCTTTGGAGACGATTAACAAGCATTTAAAG 706
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1135 GAAAAGGATTGGGCTTTGAAAGAGTTTCATTCTTTGGAGACGATTAACAAGCATTTAAAG 1194
Query 707 GAACAGGTATTGAAGTCAGTAAAACCCGATACAAAAGAGCCTGAAGAATC-ACCCAAGCC 765
|||||||||| ||||||||||||||||||||||||||| ||||||||||| ||| || ||
Sbjct 1195 GAACAGGTATCGAAGTCAGTAAAACCCGATACAAAAGAACCTGAAGAATCGACCAAA-CC 1253
Query 766 ATCACAAGTTGAGATGTCTACATCATCTACTCCGTTTTACTTCTACAACCAGAATCCATA 825
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 ATCACAAGTTGATATGTCTACATCATCTACTCCGTTTTACTTCTACAACCAGAATCCATA 1313
Query 826 TCAGCTTTTCTGCTGGCCTCATGTTACTCAATCATCAAATCCAATGATATCGCCACTTGA 885
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1314 TCAGCTTTTCTACTGGCCTCATGTTACTCAATCATCAAATCCAACGATATCGCCACTTGA 1373
Query 886 ATTC-CCTACTTCGGGAGGAGCTTCTGCTAAAACTATTACCACGCAGGAGCATGAAAATG 944
|||| || || |||||||||||||||||||||| ||| ||| | |||||||||||||||
Sbjct 1374 ATTCGCC-ACATCGGGAGGAGCTTCTGCTAAAAGTATGACCTCACAGGAGCATGAAAATC 1432
Query 945 CTGCAGATGATAATGGGCAAAAAACTCACTTTTACGTTGTACCTTGCCCTTGGTTTCTCC 1004
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1433 CTGCAGATGATAATGGGCAAAAAACTCATTTTTACGTTGTACCTTGCCCTTGGTTTCTCC 1492
Query 1005 CTCCTCCTGATCACAGCAATGGTGTTCCTTTCGGGCTTCAAGATACACAAAGAGGTACTT 1064
||||||||||||| ||||| ||||||| |||||||||||| ||||||||||||||||||
Sbjct 1493 CTCCTCCTGATCAGAGCAACAGTGTTCCCTTCGGGCTTCAAAATACACAAAGAGGTACTT 1552
Query 1065 TTTCAAACGGGCACCATATCGATGATTCTTCTGCAAGACCGATGGATGTCACAGAAACTC 1124
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 1553 TTTCAAACGGGCACCATATCGATGATTCTTCTGCAAGACCGATAGAGGTCACAGAAACTC 1612
Query 1125 CGCGGTCCCATCTACCAACTAGAATCAAAGAAGAGGACTCTGGTTCACCCGAAACCAGAC 1184
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1613 TGCGGTCCCATCTACCAACTAGAATCAAAGAAGAAGACTCTGGTTCACCCGAAACCAGAC 1672
Query 1185 CTTTATATGATCTCAACGAATCTGCTACTGAAGTCCTCTCAGAAGGAGGAGATGGATTT- 1243
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct 1673 CTTTATATGATCTCAACGAATCTGCAACTGAAGTCCTCTCAGAAGGAGGAGATG-ATTTT 1731
Query 1244 CCTGTAACGCAGCAAGCTTATAGTTTAAAGCATGAAGATGTTTCTGAGACAACTAATGGA 1303
||| ||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1732 CCTATAACGCAACAAGATTATAGTTTAAAGCATGAAGATGTTTCCGAGACAACTAATGGA 1791
Query 1304 GTTACACTGATGCCGCCTGGTCATCATGTTTTGATTTCTCTACCGGAGAAAAAGCATGGA 1363
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 1792 GTTACACTGATGCCGCCTGGTCATCATGTTTTGATTTCTCTACCGGGGAAAAAGCAAGGA 1851
Query 1364 TCGTTGGCTGCAGCGGAAGCTAGAAAGAGACGGAAAGAACTCACAAGGCTCAAGAACCTC 1423
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1852 TCTTTGGCTGCAGCGGAAGCGAGAAAGAGACGGAAAGAACTCACAAGGCTCAAGAACCTC 1911
Query 1424 CATGGCCGTCAATGTCGGATGCAGGTCGGATAA 1456
||||||||||||||||||||||| |||||||||
Sbjct 1912 CATGGCCGTCAATGTCGGATGCAAGTCGGATAA 1944
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65134318950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5