BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G19530.1

Length=700
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920906 jgi|Araly1|920906|scaffold_102187.1                        573    6e-163


> Ahg920906 jgi|Araly1|920906|scaffold_102187.1
Length=394

 Score =  573 bits (310),  Expect = 6e-163
 Identities = 365/392 (93%), Gaps = 2/392 (1%)
 Strand=Plus/Plus

Query  45   GAAAAGATTAATAGCAAATGGGTTCTTTAATGTCAGGATGGGACTCTCGAGTAAGGGATC  104
            ||||||||||| ||||||||||||| ||| |||||||||||||||||| ||||| |||||
Sbjct  4    GAAAAGATTAAGAGCAAATGGGTTCCTTAGTGTCAGGATGGGACTCTCCAGTAATGGATC  63

Query  105  CCAAATCAGTGAGAAGGTGCAAGTCGCTCACAAGAGAAGAAATCGACACTTTTTGGAAAA  164
            |||| ||||||||| |||||||||| || |||||||||||||||||||||||||||||||
Sbjct  64   CCAACTCAGTGAGACGGTGCAAGTCACTAACAAGAGAAGAAATCGACACTTTTTGGAAAA  123

Query  165  CgaagaagaagaatgaagaagaagaaCATGTTCAAGCCTTTTCCAAGTTGGTAACTCAGG  224
            | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  124  CAAAGAAGAAGAATGAAGAAGAAGAACATGTTCAAGCCGTTTCCAAGTTGGTAACTCAGG  183

Query  225  AAGGTGCACAAAGCCAAGCGAAAGA-GAAGAAGAGTGTAGATGATCTTTTTGAGAACCAA  283
            |||||||||||||||||||| |||| || |||||| ||||| ||||||||||||||||||
Sbjct  184  AAGGTGCACAAAGCCAAGCGCAAGAAGA-GAAGAGAGTAGAGGATCTTTTTGAGAACCAA  242

Query  284  AGCAAGAGTAGTGGATGGTGGAGAAAAACCTACTGGGCGTTCTTGAATGAGCCGAGGGAG  343
            |||||||| ||||||||||||||||||||| |||||||||||||||| ||||| ||||||
Sbjct  243  AGCAAGAGAAGTGGATGGTGGAGAAAAACCAACTGGGCGTTCTTGAACGAGCCAAGGGAG  302

Query  344  GAAGAGGGTCGACCGAACAACTACGTGTCGCAATTCAAAGTTGCTCACATCGCCAAAATT  403
            ||||||||||||| |||||| |||||| |||| |||||||| ||||||||||||||||| 
Sbjct  303  GAAGAGGGTCGACAGAACAATTACGTGCCGCAGTTCAAAGTGGCTCACATCGCCAAAATC  362

Query  404  GCGGGCTCGTAATGACGCTATAATCACCGGCT  435
            ||||||||||||||| ||||||||||||||||
Sbjct  363  GCGGGCTCGTAATGAAGCTATAATCACCGGCT  394



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25732968975


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5