BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19540.1
Length=1073
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472180 jgi|Araly1|472180|fgenesh2_kg.1__2134__AT1G19540.1 1434 0.0
Ahg896627 jgi|Araly1|896627|Al_scaffold_0005_593 625 2e-178
Ahg472181 jgi|Araly1|472181|fgenesh2_kg.1__2135__AT1G19570.1 76.8 3e-13
> Ahg472180 jgi|Araly1|472180|fgenesh2_kg.1__2134__AT1G19540.1
Length=1024
Score = 1434 bits (776), Expect = 0.0
Identities = 965/1052 (92%), Gaps = 30/1052 (3%)
Strand=Plus/Plus
Query 24 CTTCAACGAAACTAGCCAGAGAGATGACGAGCAAGATTCTAGTTATCGGAGCTACAGGTC 83
||||||||||| ||| |||||||||||||||||||||||| || || ||||| |||||||
Sbjct 1 CTTCAACGAAAATAGACAGAGAGATGACGAGCAAGATTCTGGTGATTGGAGCGACAGGTC 60
Query 84 TCATCGGAAAAGTCCTCGTAG-AGGAAAGCGCCAAGTCTGGCCACGCCACTTTCGCTCTG 142
|||||||||||||| |||| | ||| ||| |||||||| |||||||| |||||||||||
Sbjct 61 TCATCGGAAAAGTCATCGTCGAAGG-AAGTGCCAAGTCCGGCCACGCAACTTTCGCTCTA 119
Query 143 GTTAGAGAAGCCTCTCTCTCCGATCCCGTTAAGGCCCAACTCGTTGAGAGATTCAAAGAT 202
||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct 120 GTTAGAGAAGCCTCTCTCTCCGATCCCGTCAAGGCCCAACTCGTCGAGAGCTTCAAAGAT 179
Query 203 CTCGGCGTTACCATACTCTACGGAAGTTTAAGTGATAAAGAGAGCTTAGTGAAGGCGATT 262
|||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 180 CTCGGCGTCACTATACTCTACGGAAGTTTAAATGATAAAGAGAGCTTAGTGAAGGCGATT 239
Query 263 AAACAAGTCGATGTCGTGATATCAGCTGTTGGTCGGTTTCAAACTGAAATTCTTAATCAA 322
|||||||||||||||||||||||| ||||||||||| | || |||||||| |||||
Sbjct 240 AAACAAGTCGATGTCGTGATATCAACTGTTGGTCGG---C---CTCAAATTCTTGATCAA 293
Query 323 ACCAATATCATCGATGCCATCAAAGAATCTGGAAATGTTAAGAGATTCTTACCGTCGGAA 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 ACCAATATCATCGATGCCATCAAAGAATCTGGAAATGTTAAGAGATTCTTACCGTCGGAA 353
Query 383 TTTGGTAATGACGTGGATCGTACGGTAGCCATTGAGCCAACGCTATCAGAGTTCATCACT 442
||||| |||||||| || ||||||||||||| | ||||||||||||||| |||||||||
Sbjct 354 TTTGGCAATGACGTTGACCGTACGGTAGCCAGCGGGCCAACGCTATCAGAATTCATCACT 413
Query 443 AAAGCTCAGATAAGGCGTGCCATTGAAGCTGCAAAGATACCTTATACGTATGTCGTCTCA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 414 AAAGCTCAGATAAGGCGTGCCATTGAAGCTGCAAAGATACCTTATACGTATGTGGTTTCA 473
Query 503 GGTTGCTTTGCAGGTCTTTTTGTTCCTTGTTTGGGTCAATGCCACTTGCGACTCAGATCT 562
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 474 GGTTGCTTTGCAGGTCTTTTTGTTCCTTGTTTGGGTCAATGCCACTTGCTACTCAGATCT 533
Query 563 CCTCCTAGAGACAAAGTTTCAATCTATGATACTGGCAATGGCAAAGCCATTGTCAACACT 622
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 534 CCTCCTAGAGACAAAGTTTCCATCTATGATAGTGGCAATGGCAAAGCCATTGTCAACACT 593
Query 623 GAAGAAGACATCGTTGCATATACATTGAAAGCTGTTGATGATCCGAGAACACTTAACAAG 682
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 594 GAAGAAGACATTGTTGCATATACATTGAAAGCTGTTGATGACCCAAGAACACTTAACAAG 653
Query 683 ATTCTCTACATTCACCCGCCCAATTACATTGTATCGCAGAACGATATGGTTGGTTTGTGG 742
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 654 ATTCTCTACATTCACCCGCCCAAGAACATTGTATCGCAGAACGATATGGTTCGTTTGTGG 713
Query 743 GAGGAAAAGATCGGTAAGACTCTCGAAAAGACTTATGTTTCAGAGGAAGAACTCCTCAAA 802
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 714 GAGGAAAAGATCGGTAAGACTCTCGACAAGACTAATGTTTCAGAGGAAGAACTCCTCAAA 773
Query 803 ACCATCCAAGAGAGTAAGCCT-CCAATGGATTTTTTGGTGGGTCTGATCCATACAATCCT 861
||||||||||||| | | || ||||||||||||||||||||| |||||||||| |||||
Sbjct 774 ACCATCCAAGAGACTG-GACTTCCAATGGATTTTTTGGTGGGTTTGATCCATACGATCCT 832
Query 862 TGTGAAGAGTGACTTTACCTCCTTCACTATAGATCCTTCTTTTGGAGTTGAGGCTTCCGA 921
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 TGTGAAGAACGACTTTACCTCCTTCACTATAGATCCTTCTTTTGGAGTTGAGGCTTCCGA 892
Query 922 GCTTTACCCTGAAGTCAAGTACACTAGTGTTGATGAGTTTCTTAACCGGTTTATCTGaaa 981
|||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct 893 GCTTTACCCTGAGGTCAAGTACACAAGTGTCGATGAGTTTCTTAACCGGTTTGTCTGAAA 952
Query 982 aaaaCTTCGTCCATTATTTTGTGTGTGTAGCTACTGTTAATTCGAGTTTCGATATGGACG 1041
|||| || || |||||||||| || ||||||||||||||||||
Sbjct 953 AAAA----GT----------GT------AGCTACTGTTGATCCGAGTTTCGATATGGACG 992
Query 1042 CAAATCTTATTTCAAGCTAGTCTCCTTATTTG 1073
||||||||||||||| |||| || ||||||||
Sbjct 993 CAAATCTTATTTCAAACTAGGCTTCTTATTTG 1024
> Ahg896627 jgi|Araly1|896627|Al_scaffold_0005_593
Length=1014
Score = 625 bits (338), Expect = 2e-178
Identities = 498/573 (87%), Gaps = 19/573 (3%)
Strand=Plus/Plus
Query 47 ATGACGAGCAAGATTCTAGTTATCGGAGCTACAGGTCTCATCGGAAAAGTCCTCGTAGAG 106
||||||||||||||||| || |||||||| |||||| ||||||||||||| |||| ||
Sbjct 1 ATGACGAGCAAGATTCTGGTCATCGGAGCGACAGGTAACATCGGAAAAGTCATCGTCCAG 60
Query 107 GAAAGCGCCAAGTCTGGCCACGCCACTTTCGCTCTGGTTAGAGAAGCCTCTCTCTCCGAT 166
| |||||||||||| || ||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 61 GGAAGCGCCAAGTCCGGTCACGCCACTTTCGCTCTAGTTAGAGAGGCCTCTCTCTCTGAT 120
Query 167 CCCGTTAAGGCCCAACTCGTTGAGAGATTCAAAGATCTCGGCGTTACCATACTCTACGGA 226
|| ||||||||| ||||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 121 CCGGTTAAGGCCAAACTCGTCGAGAGCTTCAAAGATCTCGGCGTTACCATACTATATGGA 180
Query 227 AGTTTAAGTGATAAAGAGAGCTTAGTGAAGGCGATTAAACAAGTCGATGTCGTGATATCA 286
||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 181 AGTTTAACTGATAAAGAGAGCTTAGTGAATGCAATTAAACAAGTCGATGTCGTGATATCA 240
Query 287 GCTGTTGGTCGGTTTCAAACTGAAATTCTTAATCAAACCAATATCATCGATGCCATCAAA 346
|||||||||||| ||||| | | || |||||| ||||||||| ||||| ||||||
Sbjct 241 GCTGTTGGTCGGGCTCAAA-T----T-CTCGATCAAATCAATATCATTGATGCTATCAAA 294
Query 347 GAATCTGGAAATGTTAAGAGATTCTTACCGTCGGAATTTGGTAATGACGTGGATCGTACG 406
||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct 295 GAATCTGGAAATGTTAAGAGATTCTTACCATCGGAATTTGACAACGACGTGGATCGTACT 354
Query 407 GTAGCCATTGAGCCA---AC-GC-----TATCAGAGTT-CATCACTAAAGCTCAGATAAG 456
|| ||||| |||||| || || ||||| | || || || ||||||||||||||
Sbjct 355 GTGGCCATCGAGCCAGCGACTGCGACGCTATCAAA-TTACAACAGGAAAGCTCAGATAAG 413
Query 457 GCGTGCCATTGAAGCTGCAAAGATACCTTATACGTATGTCGTCTCAGGTTGCTTTGCAGG 516
||||||||| ||||| ||||||||||||||||||||||| ||| ||||||| ||||| ||
Sbjct 414 GCGTGCCATAGAAGCCGCAAAGATACCTTATACGTATGTGGTCACAGGTTGTTTTGCTGG 473
Query 517 TCTTTTT-GTTCCTTGTTTGGGTCAATGCCACTTGCGACTCAGATCTCCTCCTAGAGACA 575
| ||||| ||||| ||| | |||||||||||||||||||||| ||||||||||||||| |
Sbjct 474 T-TTTTTCGTTCCGTGTCTAGGTCAATGCCACTTGCGACTCACATCTCCTCCTAGAGATA 532
Query 576 AAGTTTCAATCTATGATACTGGCAATGGCAAAG 608
||||||| ||||| || | ||||||||||||||
Sbjct 533 AAGTTTCTATCTACGACAGTGGCAATGGCAAAG 565
Score = 418 bits (226), Expect = 4e-116
Identities = 327/376 (87%), Gaps = 6/376 (2%)
Strand=Plus/Plus
Query 607 AGCCATTGTCAACACTGAAGAAGACATCGTTGCATATACATTGAAAGCTGTTGATGATCC 666
||||||| |||| | |||||||||||| | | |||||||||| |||||||||||||| ||
Sbjct 642 AGCCATTTTCAATATTGAAGAAGACATTGCTACATATACATTAAAAGCTGTTGATGACCC 701
Query 667 GAGAACACTTAACAAGATTCTCTACATTCACCCGCCCAATTACATTGTATCGCAGAACGA 726
||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 702 GAGAACAGTTAACAAGATTCTCTACATTTACCCGCCCAAGAACATTGTATCGCAGAACGA 761
Query 727 TATGGTTGGTTTGTGGGAGGA-AAAGATCGGTAAGACTCTCGAAAAGACTTATGTTTCAG 785
|||||| ||||| ||||| || ||||||||||||||||||||| ||||||||||||||||
Sbjct 762 TATGGTCGGTTTTTGGGA-GAGAAAGATCGGTAAGACTCTCGACAAGACTTATGTTTCAG 820
Query 786 AGGAAGAACTCCTCAAAACCATCCAAGAGAGTAAGCCTCCAATGGATTTTTTGGTGGGTC 845
||||||| |||||||||| ||||||||||| | ||| ||||| |||||| |||||
Sbjct 821 AGGAAGAGCTCCTCAAAAGCATCCAAGAGACTCTGCCACCAATTGATTTTGCCATGGGTT 880
Query 846 TGATCCATACAATCCTTGTGAAGAGTGACT-TTACCTCCTTC-ACTATAGATCCTTCTTT 903
|||||||||| || |||||||||| || | |||||||||| | |||||| ||||||||
Sbjct 881 TGATCCATACGATATTTGTGAAGAGCGA-TCATACCTCCTTCGA-TATAGACCCTTCTTT 938
Query 904 TGGAGTTGAGGCTTCCGAGCTTTACCCTGAAGTCAAGTACACTAGTGTTGATGAGTTTCT 963
||||||||||||||||||||||||||| || || |||||||| | | ||||||| |||
Sbjct 939 TGGAGTTGAGGCTTCCGAGCTTTACCCCGAGGTGAAGTACACAACCATCGATGAGTATCT 998
Query 964 TAACCGGTTTATCTGa 979
|||||||||| |||||
Sbjct 999 TAACCGGTTTGTCTGA 1014
> Ahg472181 jgi|Araly1|472181|fgenesh2_kg.1__2135__AT1G19570.1
Length=854
Score = 76.8 bits (41), Expect = 3e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Minus
Query 1024 CGAGTTTCGATATGGACGCAAATCTTATTTCAAGCTAGTCTCCTTATTTG 1073
||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 853 CGAGTTTCGATATGGACGCAAATCTTATTTCAAACTAGGCTTCTTATTTG 804
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39952817016
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5