BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19570.1
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472181 jgi|Araly1|472181|fgenesh2_kg.1__2135__AT1G19570.1 1249 0.0
> Ahg472181 jgi|Araly1|472181|fgenesh2_kg.1__2135__AT1G19570.1
Length=854
Score = 1249 bits (676), Expect = 0.0
Identities = 803/863 (93%), Gaps = 14/863 (2%)
Strand=Plus/Plus
Query 60 TCACTGATTAACTCAATCATTCATCCGTCTCTGCAAACAAAGGAAGAAGAATCAAGATGG 119
||||||||||||||||||||||||||||| ||| | ||| |||||||||||||||||
Sbjct 1 TCACTGATTAACTCAATCATTCATCCGTCGCTG----C-AAGAAAGAAGAATCAAGATGG 55
Query 120 CTCTGGAAATCTGTGTGAAAGCTGCTGTTGGTGCTCCTGATCATCTCGGCGACTGTCCGT 179
|||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 56 CTCTCGAAATCTGCGTGAAAGCTGCTGTTGGTGCTCCTGATCACCTTGGCGACTGTCCGT 115
Query 180 TCAGCCAACGGGCTCTTCTCACACTCGAGGAGAAGAGTCTTACCTACAAAATCCATCTGA 239
||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 116 TCAGCCAACGGTCTCTGCTCACACTCGAGGAGAAGAATCTTACCTACAAAATCCATCTGA 175
Query 240 TTAACCTCTCTGACAAACCCCAGTGGTTCTTGGACATTAGTCCTCAAGGGAAAGTACCAG 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 TTAACCTCTCTGACAAACCCCAGTGGTTCTTGGACATTAGTCCTCAAGGGAAAGTACCAG 235
Query 300 TGCTTAAGATCGACGACAAGTGGGTGACTGATTCCGACGTCATCGTTGGTATACTCGAGG 359
| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 236 TTCTTAAGATCGACGACAAGTGGGTGACTGATTCTGACGTCATCGTTGGTATCCTCGAGG 295
Query 360 AGAAGTATCCTGATCCACCACTCAAGACTCCTGCTGAATTTGCCTCTGTTGGATCCAACA 419
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 296 AGAAGTATCCTGATCCACCTCTCAAGACTCCTCCTGAATTTGCCTCTGTTGGATCCAACA 355
Query 420 TTTTTGGTACTTTTGGGACATTCTTGAAGAGCAAAGACTCCAATGACGGATCTGAACATG 479
|||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 356 TTTTCAGTACTTTCGGGACTTTCTTGAAGAGCAAAGACTCCAATGACGGATCTGAACAGG 415
Query 480 CCTTGCTTGTTGAGCTAGAAGCTTTGGAAAACCATCTTAAGAGTCACGATGGCCCTTTTA 539
|||||||| |||||||||||| ||||| | |||||| |||||||||||||| |||||||
Sbjct 416 CCTTGCTTCATGAGCTAGAAGCCTTGGAGAGCCATCTCAAGAGTCACGATGGTCCTTTTA 475
Query 540 TCGCCGGAGAAAGAGTTTCCGCAGTGGATCTAAGCTTAGCACCAAAGCTTTACCACCTTC 599
|||| || |||||||||||||| ||||||||||||||||| |||||||||||||| || |
Sbjct 476 TCGCAGGGGAAAGAGTTTCCGCGGTGGATCTAAGCTTAGCTCCAAAGCTTTACCATCTCC 535
Query 600 AAGTTGCTCTTGGCCATTTCAAAAGCTGGTCTGT-CCCTG-AGAGCTTTCCCCATGTCCA 657
|||| ||||||||||||||||||||||||||||| ||| | | ||||| |||||||||||
Sbjct 536 AAGTCGCTCTTGGCCATTTCAAAAGCTGGTCTGTACCC-GCA-AGCTTGCCCCATGTCCA 593
Query 658 TAACTACATGAAG-ACTCTGTTCTCGCTCGACTCTTTTGAGAAAACTAAGACCGAGGAAA 716
||||||||||||| | | ||||||| |||||||| |||||||||||||||||||||||||
Sbjct 594 TAACTACATGAAGGATT-TGTTCTCTCTCGACTCCTTTGAGAAAACTAAGACCGAGGAAA 652
Query 717 AGTATGTGATCTCTGGATGGGCTCCCAAGGTTAACCCTTGAAACTATGCACCGTTATGAG 776
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 653 AGTATGTGATCTCTGGATGGGCTCCCAAGGTCAACCCTTGAAACTATGCACCGTTATGAG 712
Query 777 ATCGTTGGTGTGGTAATGTTGTTCAAGGTCTCTCTCT-T-ATATCAGTCAAATAATGTAC 834
|| ||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||
Sbjct 713 ATTGTTGGTGTGGTAACGTTGTTCAAGGTCTCTCTCTCTTATATCAGTCAAATAATGTAC 772
Query 835 TTGGACCTTTTTATGTAATGTACTGTATCAATCAAATAAGAAGCCTATTTTGAAATAAGA 894
||||||||||| || | ||||| |||||||| ||||||||||||||| ||||||||||||
Sbjct 773 TTGGACCTTTT-ATTTTATGTATTGTATCAACCAAATAAGAAGCCTAGTTTGAAATAAGA 831
Query 895 TTTGCCTCCATATCGAAACTCGG 917
||||| |||||||||||||||||
Sbjct 832 TTTGCGTCCATATCGAAACTCGG 854
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34005641964
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5