BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19580.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312889 jgi|Araly1|312889|fgenesh1_pm.C_scaffold_1001669 1175 0.0
> Ahg312889 jgi|Araly1|312889|fgenesh1_pm.C_scaffold_1001669
Length=900
Score = 1175 bits (636), Expect = 0.0
Identities = 687/712 (96%), Gaps = 2/712 (0%)
Strand=Plus/Plus
Query 292 TCAAGGCATCGGACACTGATGAATGTATTTGATAAGGCTCCGATTGTGGACAAGGAAGCT 351
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 190 TCAAGGCATCGGACACTGATGAACGTATTTGATAAGGCTCCGATTGTGGATAAGGAAGCT 249
Query 352 TTTGTGGCACCAAGCGCCTCAGTTATTGGGGACGTTCACATTGGAAGAGGATCGTCCATT 411
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 250 TTTGTGGCACCGAGCGCCTCAGTTATTGGGGACGTTCAGATTGGAAGAGGATCGTCCATT 309
Query 412 TGGTATGGATGCGTATTACGAGGCGATGTGAACACCGTAAGTGTTGGGTCAGGAACTAAT 471
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 310 TGGTATGGATGCGTATTACGAGGGGATGTGAACACCGTAAGTGTTGGGTCAGGCACTAAT 369
Query 472 ATTCAGGACAACTCACTTGTGCATGTGGCAAAATCAAACTTAAGCGGGAAGGTGCACCCA 531
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 370 ATTCAGGACAACTCACTTGTGCATGTGGCAAAATCAAACTTAAGCGGGAAAGTGCACCCA 429
Query 532 ACCATAATTGGAGACAATGTAACCATTGGTCATAGTGCTGTTTTACATGGATGTACTGTT 591
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ACCATCATTGGAGACAATGTAACCATTGGTCATAGTGCTGTTTTACATGGATGTACTGTC 489
Query 592 GAGGATGAGACCTTTATTGGGATGGGTGCGACACTTCTTGATGGGGTC-GTTGTTGAAAA 650
|||||||| |||||||| ||||||||||||||||||||||| |||| | || ||||||||
Sbjct 490 GAGGATGAAACCTTTATCGGGATGGGTGCGACACTTCTTGACGGGG-CTGTGGTTGAAAA 548
Query 651 GCATGGGATGGTTGCTGCTGGTGCACTTGTACGACAAAACACCAGAATTCCTTCTGGAGA 710
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 549 GCATGGGATGGTTGCTGCTGGTGCGCTTGTACGACAAAATACCAGAATTCCTTCTGGAGA 608
Query 711 GGTATGGGGAGGAAACCCAGCAAGGTTCCTCAGGAAGCTCACTGATGAGGAAATTGCTTT 770
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 609 GGTATGGGGAGGAAACCCAGCAAGGTTCCTTAGGAAGCTAACTGATGAGGAAATTGCTTT 668
Query 771 TATCTCTCAGTCAGCAACAAACTACTCAAACCTCGCACAGGCTCACGCTGCAGAGAATGC 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TATCTCTCAGTCAGCAACAAACTACTCAAACCTCGCACAGGCTCACGCTGCAGAGAATGC 728
Query 831 AAAGCCATTAAATGTGATTGAGTTCGAGAAGGTTCTACGCAAGAAGCATGCTCTAAAGGA 890
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 729 AAAGCCATTAAATGCGATTGAGTTCGAGAAGGTTCTACGCAAGAAGCATGCTCAAAAGGA 788
Query 891 CGAGGAGTATGACTCAATGCTCGGAATAGTGAGAGAAACTCCACCAGAGCTTAACCTCCC 950
||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 789 TGAGGAGTATGACTCAATGCTCGGTATTGTGAGAGAAACTCCACCAGAGCTTAACCTCCC 848
Query 951 TAACAACATACTGCCTGATAAAGAAACCAAGCGTCCTTCTAATGTGAACTGA 1002
||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TAACAACATACAGCCTGATAAAGAAACCAAGCGTCCTTCTAATGTGAACTGA 900
Score = 180 bits (97), Expect = 3e-44
Identities = 109/115 (95%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 175 ATGGGAACCCTAGGCAGAGCATTTTACTCGGTCGGTTTTTGGATCCGTGAGACTGGTCAA 234
||||||||| |||| ||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1 ATGGGAACCGTAGGAAGAGCATTTTACTCGGTTGGTTTTTGGATCCGTGAGACCGGTCAA 60
Query 235 GCTCTTGATCGCCTCGGTTGTCGCCTTCAAGGCAAAAATTACTTCCGAGAACAAC 289
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCTCTCGATCGCCTTGGTTGTCGCCTTCAAGGCAAAAATTACTTCCGAGAACAAC 115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5