BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19600.1
Length=1440
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920910 jgi|Araly1|920910|scaffold_102191.1 1788 0.0
> Ahg920910 jgi|Araly1|920910|scaffold_102191.1
Length=1108
Score = 1788 bits (968), Expect = 0.0
Identities = 1053/1095 (96%), Gaps = 2/1095 (0%)
Strand=Plus/Plus
Query 93 AGAGAATGGTAGCTGAGGCCTTGCCCAAATGCCCTGAAGCTCCACTCGTACTTGGACTCC 152
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 16 AGAGAATGGTAGCTGAGGCCTTGCCCAAGTGCCCTGAAGCTCCACTTGTACTTGGACTCC 75
Query 153 AACCCGCAGCTCTTATCGATAACGTCGCTCCTGTTGATTGGTCTTTACTCGATCAAATTC 212
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 76 AACCCGCAGCTCTTATCGATAACGTCGCTCCCGTCGATTGGTCTTTACTCGATCAAATTC 135
Query 213 CCGGTGATCGCGGTGGCTCCATTGCCGTGCAAAAGGATGAGTTAGAGCACATGCTAAAAG 272
||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||
Sbjct 136 CCGGTGATCGCGGTGGCTCCATTGCTGTGCAAAAGGATGAGTTAGATCACATACTAAAAG 195
Query 273 AGCTTGATGCACATATCAGTGTGGCTCCATTAAAGAAGATGGCTGGAGGAAGTGTGACCA 332
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 196 AGCTTGATACACATATCAGTGTGGCTCCATTAAAGAAGATGGCTGGAGGAAGTGTCACCA 255
Query 333 ATACAGTTCGAGGCTTGAGTGTTGGGTTCGGTGTAGCCACTGGGATTATTGGTGCTTATG 392
||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||
Sbjct 256 ATACAGTTCGAGGCTTGAGTGTTGGTTTCGGTGTAGCCACTGGGATTATCGGGGCTTATG 315
Query 393 GAGACGATGAACAAGGCCAATTGTTTGTTAGCAATATGGGTTTTAGTGGTGTGAGTATCT 452
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 316 GAGACGATGAACAAGGCCAATTGTTTGTGACCAATATGGGTTTTAGTGGTGTGAGTATCT 375
Query 453 CAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGTGTGTTTGCTTGGTTGATGACTCTG 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 376 CAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGTGTGTTTGCTTGGTTGATGACTCTG 435
Query 513 GTAATCGAACAATGCGACCATGTCTCTCGAGTGCTGTGAAGATTCAGGCAGATGAATTAA 572
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 436 GTAATCGAACAATGCGACCATGTCTCTCCAGTGCCGTGAAGATTCAGGCAGATGAATTAA 495
Query 573 GCAAAGAAGATTTCACAGGCTCTAAGTGGTTGGTTCTTAGATATGCTGTTCTTAATTTAC 632
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 496 GCAAAGAAGATTTCACAGGCTCTAAGTGGTTGGTCCTAAGATATGCTGTTCTTAATTTAG 555
Query 633 AAGTAATTCAAGCAGCCATTCGATTTGCCAAGCAAGAAGGTCTTTCTGTTTCCTTGGATT 692
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 556 AAGTAATTCAAGCAGCCATTCGATTTGCCAAGCAAGAAGGTCTCTCTGTTTCGATGGATT 615
Query 693 TAGCTAGTTTTGAGATGGTCAGGAATTCTAAATCAGAGCTTCGACAGCTTCTGGAGTCTG 752
|||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||
Sbjct 616 TAGCTAGTTTTGAGATGGTCCGGAATTCTAGATCAGAGCTTCGACAGCTTTTGGAGTCTG 675
Query 753 GTAACATAGATCTTTGCTTTGCTAACGAGGACGAAGCAGCAGAGCTCCTTAGGGGTGAGC 812
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 676 GTAACATAGATCTTTGCTTTGCTAATGAGGACGAAGCAGCAGAGCTCCTGAGGGGTGAGC 735
Query 813 AAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACATTGCAGATGGGCTGTGG 872
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 736 AAGAAGCGGGTCCGGAGGCAGCTCTTGATTTCCTAGGCAGACATTGCAGATGGGCTGTGG 795
Query 873 TAACTTTAGGGTCGAAAGGGTGCATTGCAAAACATGATAAAGAGGTGGTACATATATCAG 932
||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 796 TAACTTTGGGGCCTAAAGGGTGCATTGCAAAACATGATAAAGAGGTGGTACAAATACCAG 855
Query 933 CCATAGGAGAGACAGTAGCAACTGATGCCACAGGAGCCGGTGACCTATTCGCAAGCGGGT 992
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 856 CCATAGGAGAGACAGTAGCAACTGATGCCACAGGAGCGGGTGACCTATTTGCAAGCGGGT 915
Query 993 TTCTGTACGGACTAATAAAGGGATTGTCTTTGGAAGAATGTTGCAAAGTGGGATCATGCA 1052
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 TTCTGTACGGATTAATAAAGGGATTGTCTTTGGAAGAATGTTGCAAAGTGGGATCATGCA 975
Query 1053 GTGGTGGATCTGTCATCCGTGCTCTCGGTGGAGAAGTAACCCCAGAAAACTGGCAATGGA 1112
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 976 GTGGTGGATCTGTCATCCGTGCTCTTGGAGGAGAAGTAACCCCAGAAAACTGGCAATGGA 1035
Query 1113 TGCACAAACAGTTGCAGTTGAAGGGCTTACCTGTTCCTGACATCCACAACTGATGATATC 1172
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1036 TGCACAAACAGTTGCAGTTGAAGGACTTACCTGTTCCTGACATCCACAACTGATGAT--C 1093
Query 1173 ACCATCAGATTGTAG 1187
|||| ||||||||||
Sbjct 1094 ACCAGCAGATTGTAG 1108
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53859606430
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5