BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19600.1 Length=1440 Score E Sequences producing significant alignments: (Bits) Value Ahg920910 jgi|Araly1|920910|scaffold_102191.1 1788 0.0 > Ahg920910 jgi|Araly1|920910|scaffold_102191.1 Length=1108 Score = 1788 bits (968), Expect = 0.0 Identities = 1053/1095 (96%), Gaps = 2/1095 (0%) Strand=Plus/Plus Query 93 AGAGAATGGTAGCTGAGGCCTTGCCCAAATGCCCTGAAGCTCCACTCGTACTTGGACTCC 152 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| Sbjct 16 AGAGAATGGTAGCTGAGGCCTTGCCCAAGTGCCCTGAAGCTCCACTTGTACTTGGACTCC 75 Query 153 AACCCGCAGCTCTTATCGATAACGTCGCTCCTGTTGATTGGTCTTTACTCGATCAAATTC 212 ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 76 AACCCGCAGCTCTTATCGATAACGTCGCTCCCGTCGATTGGTCTTTACTCGATCAAATTC 135 Query 213 CCGGTGATCGCGGTGGCTCCATTGCCGTGCAAAAGGATGAGTTAGAGCACATGCTAAAAG 272 ||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||| Sbjct 136 CCGGTGATCGCGGTGGCTCCATTGCTGTGCAAAAGGATGAGTTAGATCACATACTAAAAG 195 Query 273 AGCTTGATGCACATATCAGTGTGGCTCCATTAAAGAAGATGGCTGGAGGAAGTGTGACCA 332 |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 196 AGCTTGATACACATATCAGTGTGGCTCCATTAAAGAAGATGGCTGGAGGAAGTGTCACCA 255 Query 333 ATACAGTTCGAGGCTTGAGTGTTGGGTTCGGTGTAGCCACTGGGATTATTGGTGCTTATG 392 ||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| Sbjct 256 ATACAGTTCGAGGCTTGAGTGTTGGTTTCGGTGTAGCCACTGGGATTATCGGGGCTTATG 315 Query 393 GAGACGATGAACAAGGCCAATTGTTTGTTAGCAATATGGGTTTTAGTGGTGTGAGTATCT 452 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 316 GAGACGATGAACAAGGCCAATTGTTTGTGACCAATATGGGTTTTAGTGGTGTGAGTATCT 375 Query 453 CAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGTGTGTTTGCTTGGTTGATGACTCTG 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 376 CAAGGCTCAGGAAGAAGAAAGGTTCCACTGCTCAGTGTGTTTGCTTGGTTGATGACTCTG 435 Query 513 GTAATCGAACAATGCGACCATGTCTCTCGAGTGCTGTGAAGATTCAGGCAGATGAATTAA 572 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 436 GTAATCGAACAATGCGACCATGTCTCTCCAGTGCCGTGAAGATTCAGGCAGATGAATTAA 495 Query 573 GCAAAGAAGATTTCACAGGCTCTAAGTGGTTGGTTCTTAGATATGCTGTTCTTAATTTAC 632 |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 496 GCAAAGAAGATTTCACAGGCTCTAAGTGGTTGGTCCTAAGATATGCTGTTCTTAATTTAG 555 Query 633 AAGTAATTCAAGCAGCCATTCGATTTGCCAAGCAAGAAGGTCTTTCTGTTTCCTTGGATT 692 ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 556 AAGTAATTCAAGCAGCCATTCGATTTGCCAAGCAAGAAGGTCTCTCTGTTTCGATGGATT 615 Query 693 TAGCTAGTTTTGAGATGGTCAGGAATTCTAAATCAGAGCTTCGACAGCTTCTGGAGTCTG 752 |||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||| Sbjct 616 TAGCTAGTTTTGAGATGGTCCGGAATTCTAGATCAGAGCTTCGACAGCTTTTGGAGTCTG 675 Query 753 GTAACATAGATCTTTGCTTTGCTAACGAGGACGAAGCAGCAGAGCTCCTTAGGGGTGAGC 812 ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| Sbjct 676 GTAACATAGATCTTTGCTTTGCTAATGAGGACGAAGCAGCAGAGCTCCTGAGGGGTGAGC 735 Query 813 AAGAAGCGGGTCCGGAGGCAGCTCTTGAGTTCCTAGGCAGACATTGCAGATGGGCTGTGG 872 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 736 AAGAAGCGGGTCCGGAGGCAGCTCTTGATTTCCTAGGCAGACATTGCAGATGGGCTGTGG 795 Query 873 TAACTTTAGGGTCGAAAGGGTGCATTGCAAAACATGATAAAGAGGTGGTACATATATCAG 932 ||||||| ||| | |||||||||||||||||||||||||||||||||||||| ||| ||| Sbjct 796 TAACTTTGGGGCCTAAAGGGTGCATTGCAAAACATGATAAAGAGGTGGTACAAATACCAG 855 Query 933 CCATAGGAGAGACAGTAGCAACTGATGCCACAGGAGCCGGTGACCTATTCGCAAGCGGGT 992 ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| Sbjct 856 CCATAGGAGAGACAGTAGCAACTGATGCCACAGGAGCGGGTGACCTATTTGCAAGCGGGT 915 Query 993 TTCTGTACGGACTAATAAAGGGATTGTCTTTGGAAGAATGTTGCAAAGTGGGATCATGCA 1052 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 916 TTCTGTACGGATTAATAAAGGGATTGTCTTTGGAAGAATGTTGCAAAGTGGGATCATGCA 975 Query 1053 GTGGTGGATCTGTCATCCGTGCTCTCGGTGGAGAAGTAACCCCAGAAAACTGGCAATGGA 1112 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 976 GTGGTGGATCTGTCATCCGTGCTCTTGGAGGAGAAGTAACCCCAGAAAACTGGCAATGGA 1035 Query 1113 TGCACAAACAGTTGCAGTTGAAGGGCTTACCTGTTCCTGACATCCACAACTGATGATATC 1172 |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1036 TGCACAAACAGTTGCAGTTGAAGGACTTACCTGTTCCTGACATCCACAACTGATGAT--C 1093 Query 1173 ACCATCAGATTGTAG 1187 |||| |||||||||| Sbjct 1094 ACCAGCAGATTGTAG 1108 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 53859606430 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5