BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G19610.1

Length=443
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg472186 jgi|Araly1|472186|fgenesh2_kg.1__2140__AT1G19610.1         625    9e-179


> Ahg472186 jgi|Araly1|472186|fgenesh2_kg.1__2140__AT1G19610.1
Length=423

 Score =  625 bits (338),  Expect = 9e-179
 Identities = 399/427 (93%), Gaps = 9/427 (2%)
 Strand=Plus/Plus

Query  3    ACAACAAA-AAGTCATGGCTTCTTCTTACACACTTATGCTCTTCCTTTGCCTCTCCATCT  61
            |||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1    ACAA-AAATAAGCCATGGCTTCTTCTTACACCCTTATGCTCTTCCTTTGCCTCTCCATCT  59

Query  62   TCCTTATAGCTTCCACTGAGATGATGGCGGTGGAAGGAAGAATTTGCGAGAGGAGAAGCA  121
            ||||||| ||||| |||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct  60   TCCTTATCGCTTCTACTGAGATGATGGCGGTGGAAGCAAGAATTTGCGAGAGGCGAAGCA  119

Query  122  AGACATGGACAGGGTTTTGTGGCAACACTCGTGGCTGTGACAGTCAGTGTAAGAGATGGG  181
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  120  AGACATGGACAGGGTTTTGTGGCAACACTCGTGGCTGTGACAGTCAGTGTAAGAGTTGGG  179

Query  182  AACGTGCTTCACACGGGGCTTGTCACGCTCAGTTCCCGGGTTTCGCATGTTTCTGCTACT  241
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  AACGTGCTTCACACGGGGCTTGTCACGCTCAGTTCCCGGGTTTCGCATGTTTCTGCTACT  239

Query  242  TCAATTGCTGAAGCAAGCATACTCTTAAGAGTTGTGTGAATCTTCTTCAACG-GTCACT-  299
            |||||||||||||||||||||||||||||||||||||| ||||||||| | | |||||| 
Sbjct  240  TCAATTGCTGAAGCAAGCATACTCTTAAGAGTTGTGTGGATCTTCTTCCA-GTGTCACTG  298

Query  300  TTTATATCTTGTAGCAAATCCTAATCCCTATATGTCAAAACCGTTATCTTTAGCTTGGGT  359
            ||| |||||||||||||||| || |||||||||| ||||||| | | |||||||||| ||
Sbjct  299  TTT-TATCTTGTAGCAAATCGTAGTCCCTATATGGCAAAACCATAACCTTTAGCTTGTGT  357

Query  360  TTCAGTAATAAAAATTCCCCTTTGGTTTTT-GGGAATTTTCTTTGATAAAATATATAATA  418
            | ||||||||||||||||| ||| |||||| ||||||||||| ||||||||| |||||||
Sbjct  358  T-CAGTAATAAAAATTCCC-TTTCGTTTTTTGGGAATTTTCTGTGATAAAATCTATAATA  415

Query  419  AGAGACT  425
            |||||||
Sbjct  416  AGAGACT  422



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15987191791


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5