BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19620.1
Length=954
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911785 jgi|Araly1|911785|Al_scaffold_0001_2039 710 0.0
> Ahg911785 jgi|Araly1|911785|Al_scaffold_0001_2039
Length=885
Score = 710 bits (384), Expect = 0.0
Identities = 640/757 (85%), Gaps = 44/757 (6%)
Strand=Plus/Plus
Query 1 ATGGAGGCAGAGAAAGCAGAGGCGAGTTGGACATACGAGAATCTGTTCCAGAAT-TGTAA 59
||||||||||||||||||||||||||| ||| |||| | |||| |||||||||| | |
Sbjct 1 ATGGAGGCAGAGAAAGCAGAGGCGAGTAGGAGATACAACAATCCGTTCCAGAATAT-TCG 59
Query 60 ATAC-ACCGTTGGATTGTCCGCCGTCGTAGCCT-TCGGTTACTGTTGTTTACCGGTGATC 117
|| | | ||| | |||| ||| |||||||| || ||||||||||||||||||||| ||||
Sbjct 60 ATCCTA-CGTCGAATTGGCCGGCGTCGTAG-CTCTCGGTTACTGTTGTTTACCGGCGATC 117
Query 118 GTCAACCAACTGCACGGCAAAATCC-AAACCACGGaaaaaaaGGAACCAGATCTTTACGA 176
|| | | || || |||| || ||||||||||||||||||||||||| |||||||
Sbjct 118 GT-GA--ATCT--AC-TTAAAA-CCAAAACCACGGAAAAAAAGGAACCAGAGATTTACGA 170
Query 177 TCAATATGTAGCCGCCGT-CCCTCCACCCTCCACCGTCACGCCGTTCGATTCCTATAATA 235
|||||||||||||||| | ||| |||||| ||||||||||||||||||||| |||| |||
Sbjct 171 TCAATATGTAGCCGCCTTGCCC-CCACCCCCCACCGTCACGCCGTTCGATTACTATGATA 229
Query 236 TGTCAAAGTTTGAAGATGTTGGATATTACAATAACTCGACTTACAGAGAGAATGTACCCG 295
| | ||| ||| |||| |||||||| | |||||||||| ||||||||||| |||||| |
Sbjct 230 TATTGAAGGTTGGAGATTTTGGATATGAAAATAACTCGAGTTACAGAGAGATTGTACCGG 289
Query 296 CGTTTCAAGCGGTTAAGGCGGTTGAGGAGAGTAGTTATAGTTACGATCAAGAAGTGGTGG 355
||||||||||||||||||||||||||||||||||| || ||| ||||||||||||||||
Sbjct 290 AGTTTCAAGCGGTTAAGGCGGTTGAGGAGAGTAGTTGTACTTATGATCAAGAAGTGGTGG 349
Query 356 AGATGAGTTCGAAGAGTTACAGGAGGACGAGCAGATCGGAGAAGAAGATGACGGAGAGGA 415
||||||||||||||||||| |||||||| | |||||||||||||||| |||||||||||
Sbjct 350 AGATGAGTTCGAAGAGTTATAGGAGGAC--G-AGATCGGAGAAGAAGAAGACGGAGAGGA 406
Query 416 TGGTGGAGTATCGGAAGACGGAAACGGAGAGAGTGACGAAAACGGGGTCGTGGAGGTCGC 475
||||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 407 TGGTGGAGTTTCGGAGGACGGAATCGGAGAGGGTGACGAAAACGGGGTCGTGGAGGTCGC 466
Query 476 AGTCTATGGATGGTTTAAGCAGCGGCGAGGAGTTTCGTAGGACGATACAGACTTTTGTCT 535
|||||||||||||||||||||||| |||||||||||| |||| | |||||||| |||
Sbjct 467 AGTCTATGGATGGTTTAAGCAGCG---AGGAGTTTCGTATGACGGTGGAGACTTTTATCT 523
Query 536 CGGAGCAGAAGAAGATGCATATAATCCGAGCTAGCGGCGTCGATGATCAGTTGG-AAAAC 594
||||| |||||||||||| | || |||||| ||||||||||| |||||||| || |||||
Sbjct 524 CGGAGAAGAAGAAGATGC-T-TA-TCCGAGATAGCGGCGTCGTTGATCAGT-GGCAAAAC 579
Query 595 GGCTACATTCACCGAGCT-AGCGGCGTCGATGATCGTGTTCACTATTGGGAACACGGCGC 653
|||||| ||||| | | | || | | | ||| | | | | ||| || ||||||
Sbjct 580 GGCTACGTTCACTTTTCGGAACA-CGAC--T-A-CGT-TCCTC-AGTGGCAAAACGGCGG 632
Query 654 CGTTCCTCAGTGGCAAAACGA-TGACGTTCCTCAGTTGCAAAACGGCGGCGTTCCTCATT 712
||||||||| |||||||||| || ||||||||||| ||||||||||||||||||||| |
Sbjct 633 CGTTCCTCAATGGCAAAACGGCTG-CGTTCCTCAGTGGCAAAACGGCGGCGTTCCTCAGT 691
Query 713 GGTGGCAAAACGGCAGC-GTTT-CTCAGTTGCAAAAC 747
|| ||||||||| || ||| | |||| |||||||
Sbjct 692 --TG-CAAAACGGC-GCCGTTAAC-CAGTGGCAAAAC 723
Score = 250 bits (135), Expect = 1e-65
Identities = 226/269 (84%), Gaps = 9/269 (3%)
Strand=Plus/Plus
Query 684 TCAGTTGCAAAACGGCGGCGTTCCTCATTGGT-GGCAAAACGGC-AGCGTTTCTCAGTTG 741
||||| |||||||||| |||| | | || | || || ||| | | |||| |||||| |
Sbjct 567 TCAGTGGCAAAACGGCTACGTT-CAC-TT-TTCGG-AACACGACTA-CGTTCCTCAGTGG 621
Query 742 CAAAACAGCGATGTTCCACAATGGCAAAACGGCGGCGTTCTTCAGTTGCAAAACGGTGAT 801
|||||| ||| ||||| ||||||||||||||| |||||| ||||| ||||||||| |
Sbjct 622 CAAAACGGCGGCGTTCCTCAATGGCAAAACGGCTGCGTTCCTCAGTGGCAAAACGGCGGC 681
Query 802 GTTCCACAATGGCAAACCGGCGGCGTT-TCTCAGTTGCAAAATGGTGTCCATGAGCCTCA 860
||||| || | ||||| ||||| |||| | |||| |||||| | ||||| |||||||||
Sbjct 682 GTTCCTCAGTTGCAAAACGGCGCCGTTAAC-CAGTGGCAAAACGATGTCCCTGAGCCTCA 740
Query 861 AAACGGTATCGTTCAGTGGAAAGGATCTCGTGACGATGGAAGTGGTCGTCATCGTCATCG 920
|| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 741 AAGCGGTGTCGTTCAGTGGCAAGGATCTCGTGACGATGGAAGTGGTCGTCATCGTCATCG 800
Query 921 CCATGGTCATCGTAGTCGTAAACATAGGC 949
||||||||||||||||||| ||||||||
Sbjct 801 TCATGGTCATCGTAGTCGTAGACATAGGC 829
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35416189893
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5