BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19620.1 Length=954 Score E Sequences producing significant alignments: (Bits) Value Ahg911785 jgi|Araly1|911785|Al_scaffold_0001_2039 710 0.0 > Ahg911785 jgi|Araly1|911785|Al_scaffold_0001_2039 Length=885 Score = 710 bits (384), Expect = 0.0 Identities = 640/757 (85%), Gaps = 44/757 (6%) Strand=Plus/Plus Query 1 ATGGAGGCAGAGAAAGCAGAGGCGAGTTGGACATACGAGAATCTGTTCCAGAAT-TGTAA 59 ||||||||||||||||||||||||||| ||| |||| | |||| |||||||||| | | Sbjct 1 ATGGAGGCAGAGAAAGCAGAGGCGAGTAGGAGATACAACAATCCGTTCCAGAATAT-TCG 59 Query 60 ATAC-ACCGTTGGATTGTCCGCCGTCGTAGCCT-TCGGTTACTGTTGTTTACCGGTGATC 117 || | | ||| | |||| ||| |||||||| || ||||||||||||||||||||| |||| Sbjct 60 ATCCTA-CGTCGAATTGGCCGGCGTCGTAG-CTCTCGGTTACTGTTGTTTACCGGCGATC 117 Query 118 GTCAACCAACTGCACGGCAAAATCC-AAACCACGGaaaaaaaGGAACCAGATCTTTACGA 176 || | | || || |||| || ||||||||||||||||||||||||| ||||||| Sbjct 118 GT-GA--ATCT--AC-TTAAAA-CCAAAACCACGGAAAAAAAGGAACCAGAGATTTACGA 170 Query 177 TCAATATGTAGCCGCCGT-CCCTCCACCCTCCACCGTCACGCCGTTCGATTCCTATAATA 235 |||||||||||||||| | ||| |||||| ||||||||||||||||||||| |||| ||| Sbjct 171 TCAATATGTAGCCGCCTTGCCC-CCACCCCCCACCGTCACGCCGTTCGATTACTATGATA 229 Query 236 TGTCAAAGTTTGAAGATGTTGGATATTACAATAACTCGACTTACAGAGAGAATGTACCCG 295 | | ||| ||| |||| |||||||| | |||||||||| ||||||||||| |||||| | Sbjct 230 TATTGAAGGTTGGAGATTTTGGATATGAAAATAACTCGAGTTACAGAGAGATTGTACCGG 289 Query 296 CGTTTCAAGCGGTTAAGGCGGTTGAGGAGAGTAGTTATAGTTACGATCAAGAAGTGGTGG 355 ||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||| Sbjct 290 AGTTTCAAGCGGTTAAGGCGGTTGAGGAGAGTAGTTGTACTTATGATCAAGAAGTGGTGG 349 Query 356 AGATGAGTTCGAAGAGTTACAGGAGGACGAGCAGATCGGAGAAGAAGATGACGGAGAGGA 415 ||||||||||||||||||| |||||||| | |||||||||||||||| ||||||||||| Sbjct 350 AGATGAGTTCGAAGAGTTATAGGAGGAC--G-AGATCGGAGAAGAAGAAGACGGAGAGGA 406 Query 416 TGGTGGAGTATCGGAAGACGGAAACGGAGAGAGTGACGAAAACGGGGTCGTGGAGGTCGC 475 ||||||||| ||||| ||||||| ||||||| |||||||||||||||||||||||||||| Sbjct 407 TGGTGGAGTTTCGGAGGACGGAATCGGAGAGGGTGACGAAAACGGGGTCGTGGAGGTCGC 466 Query 476 AGTCTATGGATGGTTTAAGCAGCGGCGAGGAGTTTCGTAGGACGATACAGACTTTTGTCT 535 |||||||||||||||||||||||| |||||||||||| |||| | |||||||| ||| Sbjct 467 AGTCTATGGATGGTTTAAGCAGCG---AGGAGTTTCGTATGACGGTGGAGACTTTTATCT 523 Query 536 CGGAGCAGAAGAAGATGCATATAATCCGAGCTAGCGGCGTCGATGATCAGTTGG-AAAAC 594 ||||| |||||||||||| | || |||||| ||||||||||| |||||||| || ||||| Sbjct 524 CGGAGAAGAAGAAGATGC-T-TA-TCCGAGATAGCGGCGTCGTTGATCAGT-GGCAAAAC 579 Query 595 GGCTACATTCACCGAGCT-AGCGGCGTCGATGATCGTGTTCACTATTGGGAACACGGCGC 653 |||||| ||||| | | | || | | | ||| | | | | ||| || |||||| Sbjct 580 GGCTACGTTCACTTTTCGGAACA-CGAC--T-A-CGT-TCCTC-AGTGGCAAAACGGCGG 632 Query 654 CGTTCCTCAGTGGCAAAACGA-TGACGTTCCTCAGTTGCAAAACGGCGGCGTTCCTCATT 712 ||||||||| |||||||||| || ||||||||||| ||||||||||||||||||||| | Sbjct 633 CGTTCCTCAATGGCAAAACGGCTG-CGTTCCTCAGTGGCAAAACGGCGGCGTTCCTCAGT 691 Query 713 GGTGGCAAAACGGCAGC-GTTT-CTCAGTTGCAAAAC 747 || ||||||||| || ||| | |||| ||||||| Sbjct 692 --TG-CAAAACGGC-GCCGTTAAC-CAGTGGCAAAAC 723 Score = 250 bits (135), Expect = 1e-65 Identities = 226/269 (84%), Gaps = 9/269 (3%) Strand=Plus/Plus Query 684 TCAGTTGCAAAACGGCGGCGTTCCTCATTGGT-GGCAAAACGGC-AGCGTTTCTCAGTTG 741 ||||| |||||||||| |||| | | || | || || ||| | | |||| |||||| | Sbjct 567 TCAGTGGCAAAACGGCTACGTT-CAC-TT-TTCGG-AACACGACTA-CGTTCCTCAGTGG 621 Query 742 CAAAACAGCGATGTTCCACAATGGCAAAACGGCGGCGTTCTTCAGTTGCAAAACGGTGAT 801 |||||| ||| ||||| ||||||||||||||| |||||| ||||| ||||||||| | Sbjct 622 CAAAACGGCGGCGTTCCTCAATGGCAAAACGGCTGCGTTCCTCAGTGGCAAAACGGCGGC 681 Query 802 GTTCCACAATGGCAAACCGGCGGCGTT-TCTCAGTTGCAAAATGGTGTCCATGAGCCTCA 860 ||||| || | ||||| ||||| |||| | |||| |||||| | ||||| ||||||||| Sbjct 682 GTTCCTCAGTTGCAAAACGGCGCCGTTAAC-CAGTGGCAAAACGATGTCCCTGAGCCTCA 740 Query 861 AAACGGTATCGTTCAGTGGAAAGGATCTCGTGACGATGGAAGTGGTCGTCATCGTCATCG 920 || |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 741 AAGCGGTGTCGTTCAGTGGCAAGGATCTCGTGACGATGGAAGTGGTCGTCATCGTCATCG 800 Query 921 CCATGGTCATCGTAGTCGTAAACATAGGC 949 ||||||||||||||||||| |||||||| Sbjct 801 TCATGGTCATCGTAGTCGTAGACATAGGC 829 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35416189893 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5