BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19630.1
Length=1431
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472187 jgi|Araly1|472187|fgenesh2_kg.1__2141__AT1G19630.1 2148 0.0
> Ahg472187 jgi|Araly1|472187|fgenesh2_kg.1__2141__AT1G19630.1
Length=1350
Score = 2148 bits (1163), Expect = 0.0
Identities = 1283/1340 (96%), Gaps = 12/1340 (1%)
Strand=Plus/Plus
Query 1 ATGGAACATCTTTGCCTCTGTCTTGTCCTCTGCGCTGCGATGCTAACACTTGGAAAATTT 60
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGAACATCTTTGCATCTGTCTTGTCCTCTGCGCTGCGATGCTAGCACTTGGAAAATTT 60
Query 61 CTCAAAATTATGTTCCAAGATCGAAAGAAATCAACAGCTGGTGTTCCTCCGGGAAGCGAT 120
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct 61 CTCAAAATTATGTTCCAAGATCGAAAGAAATCAACAGCTGATGTTCCACCGGGAAGCGAT 120
Query 121 GGTTTTCCGGTGATCGGAGAAACACTTCAGTTTATGCTTTCTGTCAACAGCGGCAAAGGC 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GGTTTTCCGGTGATCGGAGAAACACTTCAGTTCATGCTTTCTGTCAACAGCGGCAAAGGC 180
Query 181 TTCTACGAATTCGTCCGTAGTCGCCGTATCAGGTACGGTA-GTTGCTTTAGGACAAGTTT 239
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 181 TTCTACGAATTCGTCCGTAGTCGCCGTATCAGGTACGG-AGGTTGCTTTAGGACAAGTTT 239
Query 240 GTTCGGAGAGACACACGTGTTCCTGTCTACGACCGAGTCAGCTC-GGCTTGTTCTGAACA 298
||||||||||||||||||||| || || |||||||| ||||||| ||| |||||| ||||
Sbjct 240 GTTCGGAGAGACACACGTGTTTCTTTCGACGACCGATTCAGCTCGGGC-TGTTCTAAACA 298
Query 299 ACGACTCAGGGATGTTCACGAAACGGTACATAAAGTCCATAGGTGAGCTTGTAGGTGATC 358
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 299 ACGAGTCAGGGATGTTCACGAAACGGTACATAAAGTCTATAGGTGAGCTTGTAGGTGATC 358
Query 359 GGAGCCTTCTATGTGCTCCTCAACACCATCACAAGATTCTCCGTAGCCGTTTGATCAACT 418
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 359 GGAGCCTTCTATGTGCTTCTCAACACCATCACAAGATCCTCCGTAGCCGTTTGATAAACT 418
Query 419 TGTTCTCCAAAAGATCGACGGCTCTGATGGTTAGACACTTTGATGAACTCGTCGTGGACG 478
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 419 TGTTCTCCAAAAGATCGACGGCTCTGATGGTTAGACAATTTGACGAACTCGTCGTGGACG 478
Query 479 CTCTTGGTGGATGGGAACACCGTGGTACGGTGGTCTTGCTCACAGATTTGCTCCAGATAA 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTCTTGGTGGATGGGAACACCGTGGTACGGTGGTCTTGCTCACAGATTTGCTCCAGATAA 538
Query 539 CATTCAAAGCAATGTGTAAGATGTTAGTAAGTCTAGAAAAGGAAGAAGAACTGGGTTCCA 598
|||||||||||||||||||||||||| ||||||||||| | ||||||||| |||| ||||
Sbjct 539 CATTCAAAGCAATGTGTAAGATGTTAATAAGTCTAGAAGACGAAGAAGAATTGGGCTCCA 598
Query 599 TGCAAAGAGATGTGGGCTTTGTTTGTGAAGCCATGCTCGCTTTTCCTCTCAATTTACCTT 658
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 599 TGCAAAAAGATGTGGGCTTTGTTTGTGAAGCCATGCTTGCTTTTCCTCTCAATTTACCTT 658
Query 659 GGACTAGATTCCACAAGGGGATCATGGCAAGAGGAAGAGTTATGGAGATGTTAGAAAAGA 718
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 659 GGACTAGATTCCACAAGGGAATCATGGCAAGAGGAAGAGTTATGGAGATGTTAGAAAAGA 718
Query 719 TAATTAGAGAACGGAGAAATGAAATAAATAGTCATAATAATCATCATGAAGATTTTCTGC 778
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 719 TAATTAGAGAACGGAGAAATGAAATAAGTAGTCAAAATAATCATCATGAAGATTTTCTGC 778
Query 779 AGCAGCTTCTTGCAGTAGATAACGACACTCCTCAGTTGACTGATGCTGAGATTAAGGACA 838
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 779 AGCAGCTTCTCGCAGTAGATAACGACACTCCTAAGTTGACTGATGCTGAGATTAAGGACA 838
Query 839 ATATTCTGACCATGATCATTGCAGGACAGGACACGACTGCTAGTGCTCTGACATGGATGG 898
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 839 ATATTCTGACCATGATCATTGCAGGACAGGACACGACGGCTAGTGCTCTAACATGGATGA 898
Query 899 TCAAGTACCTCGGAGAAAATCAGAAGGTTTTGGATATTCTTATTGAAGAACAATCTCAGA 958
||||||||||||| |||||||||||||||||||||||||||||||| | |||||||||
Sbjct 899 TCAAGTACCTCGGTGAAAATCAGAAGGTTTTGGATATTCTTATTGA-G--CAATCTCAGC 955
Query 959 TTACAAAGAA---GGCATCAAATAAACCATTTCTTGAACTAGAAGATCTAAGTGAAATGC 1015
||||||| || ||| ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 956 TTACAAATAATAAGGCGTCAAATAAACCTTTTCTTGAACTAGAAGATCTCAGTGAAATGC 1015
Query 1016 CATATGCCTCAAAGATGGTGAAAGAATCTCTGAGAATGGCGTCTGTTGTGCCTTGGTTCC 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CATATGCCTCAAAGATGGTGAAAGAATCTCTGAGAATGGCGTCTGTTGTGCCTTGGTTCC 1075
Query 1076 CAAGATTAGTCCTTCAAGACTGTGAAATGGAAGGATATAAGATCAAAAAAGGGTGGAATA 1135
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CAAGATTAGTACTTCAAGACTGTGAAATGGAAGGATATAAGATCAAAAAAGGGTGGAATA 1135
Query 1136 TAAATATTGACGCAAGATCCATTCATCTTGATCCTACTGTATACAGTGAACCTCACAAGT 1195
|||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||
Sbjct 1136 TAAATATTGACGCAAGATCCATTCATCTTGATCCTACTGTGTATAATGAACCTCACAAGT 1195
Query 1196 TCAACCCTTTAAGGTTTGAGGAGGAAGCAAAAGCAAACAGTTTTCTAGCATTTGGGATGG 1255
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1196 TCAACCCTTTAAGGTTTGAGGAGGAAGCAAAAGCAAACAGTTTCCTAGCATTTGGGATGG 1255
Query 1256 GAGGAAGAACATGTCTTGGACTTGCTT-TGGCCAAAGCCATGATGTTAGTGTTTCTCCAC 1314
|||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||
Sbjct 1256 GAGGAAGAACATGTCTTGGACTTG-TTATGGCCAAAGCCATGATGTTAGTATTTCTCCAC 1314
Query 1315 CGTTTTATAACAACTTACAG 1334
||||||||||| ||||||||
Sbjct 1315 CGTTTTATAACCACTTACAG 1334
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53516794225
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5