BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19640.1
Length=1589
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472188 jgi|Araly1|472188|fgenesh2_kg.1__2142__AT1G19640.1 2084 0.0
> Ahg472188 jgi|Araly1|472188|fgenesh2_kg.1__2142__AT1G19640.1
Length=1356
Score = 2084 bits (1128), Expect = 0.0
Identities = 1293/1369 (94%), Gaps = 25/1369 (2%)
Strand=Plus/Plus
Query 89 TTCTGCTTCATCaaaaagaaagagacacaaagagcgagagagggagagagaTGGAGGTAA 148
|||||||||||||||||||||||||||| | | ||| ||| | |||||| ||||
Sbjct 1 TTCTGCTTCATCAAAAAGAAAGAGACAC----A---A-AGA--GAG-G-GATGGAAGTAA 48
Query 149 TGCGAGTTCTTCACATGAACAAAGGAAACGGTGAAACGAGTTATGCCAAGAACTCCACCG 208
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 49 TGCGAGTTCTTCACATGAACAAAGGAAACGGTGAAACAAGTTATGCCAAGAACTCCACCG 108
Query 209 CTCAGAGTAACATAATATCTCTAGGCAGAAGAGTAATGGACGAGGCCTTGAAGAAGTTAA 268
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 109 TTCAGAGCAACATAATATCTCTAGGCAGAAGAGTAATTGACGAGGCCTTGAAGAAGCTAA 168
Query 269 TGATGAGCAATTCAGAGATTTCGAGCATTGGAATCGCCGACTTAGGCTGCTCCTCCGGTC 328
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 169 TGATGAGAAATTCAGAGATTTCGAGCATTGGAATCGCCGACTTAGGTTGCTCCTCCGGCC 228
Query 329 CGAACAGTCTCTTGTCCATCTCCAACATAGTTGACACGATCCACAACTTGTGTCCTGACC 388
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 229 CGAACAGTCTCTTGTCCATCTCTAACATAGTTGACACGATCCACAACTTGTGTCCTGACC 288
Query 389 TCGACCGTCCTGTCCCTGAGCTCAGAGTCTCTCTGAACGACCTCCCTAGCAATGACTTCA 448
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 289 TCGACCGTCCAGTCCCTGAGCTCAGACTCTCTCTCAACGACCTCCCTAGCAATGACTTCA 348
Query 449 ACTACATATGTGCTTCTTTGCCAGAGTTTTACGACCGGGTTAATAATAACAAGGAGGGTT 508
||||||||| |||||||||||| |||||||| |||||| |||||||||||||||||||||
Sbjct 349 ACTACATATTTGCTTCTTTGCCGGAGTTTTATGACCGGATTAATAATAACAAGGAGGGTT 408
Query 509 TAGGGTTCGGTCGTGGAGGAGGAGAATCGTGTTTTGTGTCGGCCGTCCCAGGTTCGTTCT 568
||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 409 TAGGGTTCGGTCGCGGAGGAGGAGAATCGTGTTTTGTGTCGGCCGTCCCTGGCTCGTTCT 468
Query 569 ACGGACGTTTGTTTCCTCGCCGGAGCCTTCACTTTGTGCATTCTTCTTCTAGTTTACATT 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 ACGGACGTTTGTTTCCTCGCCGGAGCCTTCACTTTGTGCATTCTTCTTCTAGTTTACATT 528
Query 629 GGTTATCTCAGGTTCCATGTCGTGAGGCGGAGAAGGAAGACAGGACAATAACAGCTGATT 688
|||| |||||||||||||||||||||| |||||||||||||||| | |||| ||||||||
Sbjct 529 GGTTGTCTCAGGTTCCATGTCGTGAGGTGGAGAAGGAAGACAGGGCGATAAGAGCTGATT 588
Query 689 TAGAAAACATGGGGAAAATATACATATCAAAGACAAGTCCTAAGAGTGCACATAAAGCTT 748
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 TAGACAACATGGGGAAAATATACATATCAAAGACAAGTCCTAAGAGTGCACATAAAGCTT 648
Query 749 ATGCTCTTCAATTCCAAACTGATTTCTGGGtttttttGAGATCGCGATCTGAGGAGTTGG 808
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 649 ATGCTCTTCAATTCCAAACTGATTTCTTGGTTTTTTTGAGATCGCGATCTGAGGAGTTGG 708
Query 809 TCCCGGGAGGCCGAATGGTTTTATCGTTCCTTGGTAGAAGATCACTGGATCCCACAACCG 868
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 709 TCCCGGGAGGACGAATGGTTTTATCGTTCCTTGGTAGAAGCTCGCTGGATCCCACAACCG 768
Query 869 AAGAGAGTTGCTATCAATGGGAACTCCTAGCTCAAGCTCTTATGTCCATGGCCAAAGAGG 928
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 AAGAGAGTTGCTATCAATGGGAACTCCTAGCTCAAGCTCTTATGTCCATGGCCAAAGAGG 828
Query 929 GTATCATCGAGGAAGAGAAGATCGATGCTTTCAACGCTCCTTACTATGCTGCGAGCTCCG 988
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 829 GTATCATCGAGGAAGAGAAGATCGATGCTTTCAACGCTCCTTACTATGCTGCAAGCTCCG 888
Query 989 AAGAGTTGAAAATGGTGATAGAGAAAGAAGGGTCATTTTCGATCGATAGGCTTGAGATAA 1048
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 889 AAGAGTTGAAAATGGTGATAGAGAAAGAAGGGTCCTTTTCGATCGATAGGCTCGAGATAA 948
Query 1049 GTCCGATTGATTGGGAAGGTGGGAGTATCAGTGAGGAGAGTTATGACCTTGTAATAAGGT 1108
||||| |||||||||||||| |||||||||||||||||||||||||||| ||| ||||||
Sbjct 949 GTCCGGTTGATTGGGAAGGTAGGAGTATCAGTGAGGAGAGTTATGACCTAGTAGTAAGGT 1008
Query 1109 CCAAACCCGAAGCCCTAGCTAGTGGCCGAAGAGTGTCTAATACCATAAGAGCTGTGGTCG 1168
||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 1009 CCAAACCTGAAGCCCTAGCTAGTGGACGAAGAGTGGCTAATACCATAAGAGCTGTGGTCG 1068
Query 1169 AGCCGATGCTAGAACCTACTTTCGGTGAAAATGTGATGGACGAGCTTTTTGAAAGGTATG 1228
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 AGCCGATGCTAGAACCTACATTCGGTGAAAATGTGATGGACGAGCTTTTTGAAAGGTATG 1128
Query 1229 CAAAGATCGTGGGAGAGTACTTCTATGTAAGCTCGCCACGATACGCTATTGTTATTCTTT 1288
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1129 CAAAGATCGTGGGAGAGTACTTCTATGTAAGCTCGCCTCGATACGCTATTGTTATTGTTT 1188
Query 1289 CGCTCGTTAGAGCCGGTTGATCGTGTTATAACATATGCC-A-ATATA--CATGTCTTTGG 1344
||||||||||| ||||||||||||| ||||||||||||| | ||||| |||||||||||
Sbjct 1189 CGCTCGTTAGAACCGGTTGATCGTGATATAACATATGCCTATATATATACATGTCTTTGG 1248
Query 1345 GCCTACAATGACATGATTTGGTA-GTTTTCTAATCAAGCATA-TGTA-AT--A-TA--AT 1396
||||||||||||||||||| || |||||||||||||| ||| |||| || | || ||
Sbjct 1249 ACCTACAATGACATGATTTG-TAAGTTTTCTAATCAAGTATACTGTATATGTAATATCAT 1307
Query 1397 TTGCTTCGAGAATAAAATAATAAAATAAAGTCTGATGTTACGGTAGACC 1445
||||||||||||||||| ||||||||| ||| |||| ||||||||||||
Sbjct 1308 TTGCTTCGAGAATAAAACAATAAAATAGAGTGTGATTTTACGGTAGACC 1356
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59535052935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5