BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19670.1
Length=1281
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472193 jgi|Araly1|472193|fgenesh2_kg.1__2147__AT1G19670.1 1631 0.0
> Ahg472193 jgi|Araly1|472193|fgenesh2_kg.1__2147__AT1G19670.1
Length=1094
Score = 1631 bits (883), Expect = 0.0
Identities = 1040/1113 (93%), Gaps = 21/1113 (2%)
Strand=Plus/Plus
Query 2 AATGAATCGGATAAGAAAAATCAACATTCTCCCCCTATAAATACAAAACAACTAGCTAAA 61
|||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 AATGGATCGGATAAGAAAAATCCACATTCTCCCCCTATAAATA-GAAACAACTAGCTAAA 59
Query 62 GTTCGAAGGATTCATACATAAATCTTCAACACAACTCTTTAATTATCTAGTTTAATACAA 121
| ||||| ||||||||| | | | || ||||||| | | ||||||||||||
Sbjct 60 GCTCGAAAGATTCATAC----A---T----A-AA-TCTTTAA-CA-C-AGTTTAATACAA 103
Query 122 ATGGCGGCGATAGAGGACAGTCCAACGTTTTCCTCTGTGGTAACTCCGGCGGCTTTTGAG 181
|||||| |||||||||||||||||||||||| ||||| || ||||||||| || ||||||
Sbjct 104 ATGGCGACGATAGAGGACAGTCCAACGTTTTTCTCTGCGGCAACTCCGGCAGCGTTTGAG 163
Query 182 ATAGGCAGCCTCCCGACAACCGAGATACCGGTGGATCCGGTGGAAAATGATTCAACAGCA 241
|||||||| || |||||| |||| ||||||||||| ||| ||||||||||||||||||||
Sbjct 164 ATAGGCAGTCTTCCGACAGCCGAAATACCGGTGGACCCGTTGGAAAATGATTCAACAGCA 223
Query 242 CCGCCAAAACCGGTGAGAATCACCTGTCCAACAGTCGCCGGAACTTATCCCGTCGTTTTA 301
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 224 CCGCCAAAGCCGGTGAGAATCACCTGTCCAACAGTCGCCGGAACTTTTCCCGTCGTCTTA 283
Query 302 TTCTTCCATGGCTTTTATCTTCGCAACTACTTCTACTCTGACGTTCTTAACCACATCGCT 361
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 284 TTCTTCCATGGCTTTTATCTTCGCAACTACTTCTACTCTGACGTTATTAACCACGTCGCT 343
Query 362 TCGCATGGTTACATTCTTGTAGCCCCACAGTTGTGCAAATTATTGCCGCCGGGAGGGCAA 421
|| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 344 TCTCATGGCTACATTCTTGTAGCCCCACAGCTGTGCAAATTATTGCCGCCGGGAGGGCAA 403
Query 422 GTGGAAGTGGACGATGCTGGAAGTGTGATAAACTGGGCATCGGAAAACCTCAAAGCTCAC 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 GTGGAAGTGGACGATGCTGGAAGTGTGATAAACTGGGCATCGGAAAACCTCAAAGCTCAC 463
Query 482 CTACCAACTTCGGTAAATGCTAATGGAAAATACACCTCACTCGTGGGCCACAGCCGCGGT 541
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 464 CTACCAACTTCGGTAAATGCTAATGGCAAATACACCTCACTCGTGGGCCACAGCCGCGGT 523
Query 542 GGGAAAACGGCGTTTGCGGTTGCGCT-AGGCCATGCCGCAACATTAGACCCATCCATCAC 600
|||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 524 GGGAAAACCGCGTTCGCGGTTGC-CTTAGGCCATGCCGCAACATTAGACCCATCCATCAA 582
Query 601 GTTTTCAGCTCTAATAGGAATTGATCCAGTCGCAGGAACTAACAAATACATTAGAACCGA 660
|||||||||||||||||| || ||||||||||||||||| ||||||| ||| ||||||||
Sbjct 583 GTTTTCAGCTCTAATAGGGATCGATCCAGTCGCAGGAACCAACAAATTCATGAGAACCGA 642
Query 661 TCCGCATATCTTAACGTATAAACCGGAATCTTTCGAGCTGGACATACCGGTTGCAGTGGT 720
|||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 643 TCCGCATATCTTAACGAATAAACCGGAATCGTTCGATCTGGACATACCGGTTGCAGTGGT 702
Query 721 GGGAACCGGACTCGGACCGAAGTGGAACAACGTGATGCCACCATGCGCACCAACGGACTT 780
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 703 GGGAACCGGACTCGGACCAAAGTGGAACAACGTGATGCCACCATGCGCACCAACGGACTT 762
Query 781 AAACCATGAGGAGTTTTACAAAGAGTGTAAGGCGACGAAAGCCCATTTCGTGGCTGCGGA 840
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 763 AAACCATGAGGAGTTTTACAAAGAGTGTAAGGCGACGAAAGCCCATTTTGTGGCTGCGGA 822
Query 841 TTACGGACATATGGATATGTTGGACGATGATTTGCCCGGTTTTGTT-GGGTTTATGGCCG 899
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 823 TTACGGACATATGGATATGTTGGACGATGATTTGCCCGGTTTT-TTCGGGTTTATGGCCG 881
Query 900 GTTGTATGTGTAAGAATGGGCAAAGAAAAAAGTCTGAGATGAGGAGCTTTGTAGGTGGAA 959
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
Sbjct 882 GTTGTATGTGTAAGAATGGGCAAAGAAAAAAGTCTGAGATGAGGAGTTTTGTGGGTGGGA 941
Query 960 TTGTGGTTGCGTTTCTCAAGTATAGTTTGTGGGGTGAAAAAGCGGAGATTCGATTGATTG 1019
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 942 TTGTGGTTGCGTTTCTCAAGTATAGTTTGTGGGGTGAAAAATCGGAGATTCGATTGATTG 1001
Query 1020 TGAAGGATCCTTCCGTTTCTCCGGCCAAGCTTGATCCTTCACCTGAGTTGGAAGAAGCTT 1079
||||||||||||||||||||||||| | | |||||||||| || |||||||||||||| |
Sbjct 1002 TGAAGGATCCTTCCGTTTCTCCGGCGAGGATTGATCCTTCGCCGGAGTTGGAAGAAGCGT 1061
Query 1080 CTGGTATCTTCGTCTAGATTTGTGTTATGTACT 1112
|||| ||||| ||||||||||||||||||||||
Sbjct 1062 CTGGCATCTTTGTCTAGATTTGTGTTATGTACT 1094
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47882383752
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5