BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19680.1
Length=1805
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472194 jgi|Araly1|472194|fgenesh2_kg.1__2148__AT1G19680.1 1927 0.0
Ahg926923 jgi|Araly1|926923|scaffold_202484.1 568 7e-161
> Ahg472194 jgi|Araly1|472194|fgenesh2_kg.1__2148__AT1G19680.1
Length=1689
Score = 1927 bits (1043), Expect = 0.0
Identities = 1358/1504 (90%), Gaps = 45/1504 (3%)
Strand=Plus/Plus
Query 281 TTTAAGGATTATGGGGTCTGTTTGCTGTGTGGCTGCAAAGGACAGAAATGTTCCCAGTGG 340
|||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||
Sbjct 224 TTTAAGGATTATGGGGTCTGTTTGCTGTGTGGCTGCAAAGGATAGAAATCTTCCTAGTGG 283
Query 341 AGCTATTGATAATTCAGTGTGTTCACCATCGTGGAGTTTTCGACGGGACAACAGGAGGCG 400
||||||| ||||| ||||||| |||||| |||||||||||||| ||||||||||||||||
Sbjct 284 AGCTATTCATAATCCAGTGTGCTCACCACCGTGGAGTTTTCGATGGGACAACAGGAGGCG 343
Query 401 TGTAGCTGATGAGATTAAAGATTCATCTAATCATAATGTTGGGAGTAGAGGTATTGACAT 460
|||||||||||| |||||||| | || ||| | | | | | | | ||
Sbjct 344 TGTAGCTGATGAAATTAAAGA-T--TC--ATC-T-A-------A-T-----CA-T-A-AT 380
Query 461 CGATAAGTTGTCGTTAGGCTTAGAGAGAGGACCTCCGTCATCTGAAACTGGGGGTTTAGC 520
||||||||||||||||| ||||||||||||||| | ||||||||| ||| ||||||
Sbjct 381 -GATAAGTTGTCGTTAGGGTTAGAGAGAGGACCT-C--CATCTGAAA---GGGATTTAGC 433
Query 521 TACTCTTGGCTCTCAGAAATCC-GCAGACTCAGAGATGGGCACAGCTTCGATGGTTACAG 579
|| || || |||||| ||| || |||||||||||||||||||||||||||||| |||| |
Sbjct 434 TATTCCTGCCTCTCATAAA-CCTGCAGACTCAGAGATGGGCACAGCTTCGATGATTACGG 492
Query 580 CTCCTTTAGCGGGTACAAGTTTGGCGATTCGATCTCCTTCAGATGTATCCTTGGCAAGTC 639
|||||||| | || | ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 493 CTCCTTTAACTGGCAAAAGTTTGGCGATTCGATCTCCTTCAGATGTATCCTTGATAAGTC 552
Query 640 CTGTTCGTGTTGAGGTGAAGAATATAGTTGACTCATCAGATATTGTTTCATCAGTTTTAC 699
|||||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 553 CTGTTCATGTTGAGGTGAAGAATATAGTTCACTCACCAGATATTGTTTCATCAGTTTTAC 612
Query 700 CAAATCCGTCAAGTTCCACCTCGGTCTCTGATCTTCCTTCAGCTCACACACATTCACTTC 759
||||||| ||||||||||||||||||||||||||||| || | || ||||||||| ||||
Sbjct 613 CAAATCCTTCAAGTTCCACCTCGGTCTCTGATCTTCCATCGGGTCTCACACATTCGCTTC 672
Query 760 CTCCCAGATCAACTCCGTCTAGACGTGCTCGAGGTTCACCTGGGCAGCAGTTGTTTAGGC 819
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 CTCCCAGATCAACTCCAACTAGACGTGCTCGAGGTTCACCTGGGCAGCAGTTGTTTAGGC 732
Query 820 AGGTTTCTGATAGTCAAACTTTGGGATTGAAATCTCCCAATAATTACTCAACATCTGAAG 879
|||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||||||
Sbjct 733 AGGTTTCTGATAGTCAAACTTTGGGACTGAAATCACCCAACAATTACTCAATATCTGAAG 792
Query 880 GAAGGTCGTCCTTTGTGCTTTCGACCTGTAGTAATGACACTGCCACTGGGTCCCATTTTG 939
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 793 GAAGGTCGTCCTTTGTGCTTTCGACCTGTAGTAATGACACTGTCACTGGGTCCCATAATA 852
Query 940 CTTCTTCTGAAGGTGGCTGGTCCATAAACGCCTTTTGTGAGCTCGTGGCTCAGTCTCAAA 999
||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||
Sbjct 853 CTTCTTCTGAAGGTGGCTGGTCCATGAACGCCTTTTGTGAGCTCGTGTCTCAATCTCAAA 912
Query 1000 GGGAGAGATGGTCTTTTGATAATGAGCACTTAGGTTCCGGACGACGAAGACTAAGTGGGT 1059
||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||
Sbjct 913 GGGAGAGATGGTCGTTTGATAGTGAGCACTTAGGTTCTGGAATACGAAGACTAAGTGGGT 972
Query 1060 GTAGTAGTAGCAGATTCTCATGCTCCCCTTCTGTTGATCAGCAGACTTGTGGGCGTTGCT 1119
||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |||||
Sbjct 973 GTAGTAGTAGCAGATTCTCGTGCTCCCCTTCTGTAGATCGGCAGACTTGTGGGAATTGCT 1032
Query 1120 CAAAGCTTTTAACTGAAAGGTCTCCAGTTGCCAGGTTTGACCTTCCAATTCCTGCTGTTC 1179
|||||||||||||||| |||||| || ||||||||||||||||||||||| |||||||||
Sbjct 1033 CAAAGCTTTTAACTGAGAGGTCTTCAATTGCCAGGTTTGACCTTCCAATTTCTGCTGTTC 1092
Query 1180 TAGCGTGCGGCCATGTTTACCATGCGGCATGCTTAGAGACAATGACAAATGAAACAGAGA 1239
||||||| ||||||||||||||||| | |||||||||||||||||||| ||| |||||||
Sbjct 1093 TAGCGTGTGGCCATGTTTACCATGCAGAATGCTTAGAGACAATGACAAGTGAGACAGAGA 1152
Query 1240 AGTATGATCCTACGTGTCCCATATGCACAGAGACACAGGTTACTAAATTATCGAGGAAAG 1299
||||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||||
Sbjct 1153 AGTATGATCCTACATGTCCCATATGCGCAGAGACGCAAGTTACTAAATTATCGAGGAAAG 1212
Query 1300 CTCTAAAAGCCGAGGCA-GAATTGAAGGCAACGAGTTACAAAAGGTGTAAGAACCGTGTG 1358
||||||| || ||| || |||||||||||||||||||||||||| |||||||||| ||||
Sbjct 1213 CTCTAAAGGCGGAG-CAAGAATTGAAGGCAACGAGTTACAAAAGATGTAAGAACCATGTG 1271
Query 1359 GTAGATAGTTATGTCCGCAGTGAATGTGAGGATCTTATGTTCCAGAATCTAGGGAAACGA 1418
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||
Sbjct 1272 GTAGATAGTTATGTCCGCAGTGAATGTGAGGATCTTGTGTTCCAGAAACTAGGGAAGCGA 1331
Query 1419 GAAGGAAAAGGTCTGAAGATGGATCCTAGTTCGAA-TACCAAAGGCTCCACGTCTAAGTC 1477
|||||||||||||| ||||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 1332 GAAGGAAAAGGTCTAAAGATAGATCCTAGTTC-AAGTACCAAAGGCTCCACGTCTAAGTC 1390
Query 1478 TTTTATGAAATGGCACTTCGGTTCCGTCAGCACCAAGTGGAGTAAAGCCAGGGATTCTAC 1537
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 1391 TTTTATGAAATGGCACTTCGGTTCCGTCAGCGCCAAGTGGAGTAAAGTCAGGGATTCTAC 1450
Query 1538 CTCGAAGAAGAGCTTTTGGTCCAGACATAGTAATAAAAGATTAAGTCATTCTTTTTCAAG 1597
||||||||| ||||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1451 CTCGAAGAAAAGCTTTTGGCCCAGACATAGTAATAAAAGATTAAGTCATACTTCTTCAAG 1510
Query 1598 CGTTGAGGGCCTTAATCAGGCAACATGACATAAAATAGGACTGGCTTTGGATTAGAGAAA 1657
||||||| || |||||||| ||||||||||||||| |||||||||||||||||||||| |
Sbjct 1511 CGTTGAGAGCTTTAATCAGACAACATGACATAAAAGAGGACTGGCTTTGGATTAGAGAGA 1570
Query 1658 AGCTCCCTTAAACATTTTGTATCCCTTTTTACTTTTATTCCATGTTTAAATGTCACATGG 1717
|| | |||| |||||||||||||||| || ||||||||| |||||| | ||||||||||
Sbjct 1571 AGATGCCTTTAACATTTTGTATCCCTCTT--CTTTTATTC-ATGTTTCATTGTCACATGG 1627
Query 1718 GGAAAATA-TGTGTA--CCAATGAAACAAACTT-GTCATTTTGTAGAATGCAGAAGAAAC 1773
| | || |||||| ||| ||||||||| || ||||||||| |||||||||||||||
Sbjct 1628 G-ACAACGGTGTGTATACCAGTGAAACAAAATTTGTCATTTTGGAGAATGCAGAAGAAA- 1685
Query 1774 AAAA 1777
||||
Sbjct 1686 AAAA 1689
Score = 270 bits (146), Expect = 2e-71
Identities = 211/239 (88%), Gaps = 17/239 (7%)
Strand=Plus/Plus
Query 4 AAAAAGAAGAGAGGAAGGGTGACGTGGCACAATTTC-CCTGCGACGCACCCAACCTCCGt 62
|||||| ||||||||||||||||||||||| | ||| |||| |||||||||||||||||
Sbjct 1 AAAAAGGAGAGAGGAAGGGTGACGTGGCAC-AGTTCTCCTGTGACGCACCCAACCTCCG- 58
Query 63 ctctctctctctcAGATCGGCGGCCATCTCCGTCGAGTAATTGAAATCTCTCTCAGCCGT 122
|||||||||| | |||||||||||||||||||||||| |||||||||||
Sbjct 59 ---TCTCTCTCTC---T-------CATCTCCGTCGAGTAATTGAAATCGCTCTCAGCCGT 105
Query 123 TGGATTCGAATTCCGCCGCATCTTCATATACCTCGTTTCAATCCTGCGGAACCCTAGTTG 182
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 106 TGGATTCGAATTCCGCCGTATCTTCATATACCTCGTTTCAATCCTGCGGAACCCTAGTTG 165
Query 183 CTCTGAATTGTGGTTTGCTACTGTGATAAGTTCTTCAGTGGTAGATTAGGAAGCACCAC 241
||| ||||||| || |||||||||||| |||||||| ||||| |||||||||||||||
Sbjct 166 ATCTTAATTGTGATT-GCTACTGTGATACGTTCTTCAATGGTAAATTAGGAAGCACCAC 223
> Ahg926923 jgi|Araly1|926923|scaffold_202484.1
Length=1408
Score = 568 bits (307), Expect = 7e-161
Identities = 706/888 (80%), Gaps = 69/888 (8%)
Strand=Plus/Plus
Query 728 TGATCTTCCTTCAGCTCACACACATTCACTTCCTCCCAGATCAACTCCGTCTAGACGTGC 787
||||||| | || |||||||| | || |||||||| | ||| || || || ||||| ||
Sbjct 479 TGATCTTTCATCGGCTCACACGCGTTTGCTTCCTCCTAAATCCACACCATCAAGACGGGC 538
Query 788 TCGAG-GTTCACCTGGGCAGCAGTTGTTTAGGCAGGTTTCTGATAGTCAAA-CTTTGGGA 845
||| | ||||||||||||| ||||||||||||||||||||||||||||||| ||| || |
Sbjct 539 TCG-GCGTTCACCTGGGCATCAGTTGTTTAGGCAGGTTTCTGATAGTCAAATCTTAGG-A 596
Query 846 TTGAAATCTCCCAA-TAAT--T-ACTCAA-CATCTGAAGGAAGGTCGTCCTTTGTGCTTT 900
||||||| ||||| |||| | |||| | | || |||||||||||||||||||||||||
Sbjct 597 CTGAAATC-CCCAAATAATAATTACTCGATC-TCAGAAGGAAGGTCGTCCTTTGTGCTTT 654
Query 901 CGACCTGTAGTAATGACA-CTGCCACTGGGTCCCATTTTGCTTCTTCTGAAGGTGGCTGG 959
| |||||||| |||||| | |||||||| ||||| | || ||||||||||||||||||
Sbjct 655 CAACCTGTAGCAATGACTTC-GCCACTGGATCCCAGTACGCATCTTCTGAAGGTGGCTGG 713
Query 960 TCCATAAACGCCTTTTGTGAGCTCGTGGC-TCAGTCTCAAAGGGAGAGATGGTCTTTTGA 1018
|| || ||| | |||| |||||||||||| | | |||||||||||||||||||| |||||
Sbjct 714 TCTATGAACACTTTTTCTGAGCTCGTGGCGT-ATTCTCAAAGGGAGAGATGGTCCTTTGA 772
Query 1019 TAATGAGCACTTAGGTTCCGG-ACGACG-AAGACTAAGTGGGTGTAGTAGTAGCAGATTC 1076
|| || ||||||||||| || | |||| || ||||||||| || |||| |||||||||
Sbjct 773 TAGCGAACACTTAGGTTCTGGCA-GACGGAA-ACTAAGTGG-TG--GTAGCAGCAGATTC 827
Query 1077 TCATGCTCCCCTTC--T-GTTGATCAGCAGACTTGTGG-GCGTTGCTCAAAGCTTT-TAA 1131
|| | ||||||||| | ||||||||||||| |||||| || |||||||||| || |||
Sbjct 828 TCCTTCTCCCCTTCCATTGTTGATCAGCAGATTTGTGGAGC-TTGCTCAAAG-TTACTAA 885
Query 1132 CTGAAAGGTCTCC-AGTTGCCAGGTTT-GACCTTCCAATTC-CTGCTGTTCTAGCGTGCG 1188
| || |||||| | | |||||| ||| || || ||||| | |||||||||| ||||| |
Sbjct 886 CCGAGAGGTCTTCTA-TTGCCAA-TTTCGAGCTCCCAAT-CGCTGCTGTTCTTGCGTGTG 942
Query 1189 GCCATGTTTACCATGCGGCA-TGCTTAGAGACAATGACAAATGAAACAGAGAAGTATGAT 1247
||||||||||||| || | | ||||||||||| ||||| | || | ||||||||| |||
Sbjct 943 GCCATGTTTACCACGCAG-AGTGCTTAGAGACCATGACTACCGAGATAGAGAAGTACGAT 1001
Query 1248 CCTACGTGTCCCATATGCAC-A--G---AGACACAGGTTA-CTAAATTATCGAGGAAAGC 1300
||| | |||||||||||||| | | ||| || ||| | | ||| || | ||||||||
Sbjct 1002 CCTGCTTGTCCCATATGCACGATTGGGGAGAAACGGGT-AGCGAAAATAACAAGGAAAGC 1060
Query 1301 TCTAAAAGCCGAGGCAGAATTGAAGGCAACG-AGTTACAAAAGGTGTAAGAACCGTGTGG 1359
|| ||||| ||||| ||| ||||||| | ||| ||||||| ||||| ||||||||||
Sbjct 1061 CCTTAAAGCGGAGGCGGAAGCAAAGGCAAAGCAGT-ACAAAAGATGTAAAAACCGTGTGG 1119
Query 1360 TAGATAGTTATG-TCCGCAGTGAATGTGAGGA-TCTTATGTTCCAGAATCTAGG-GAAAC 1416
|||||||||||| | | |||||||| || || | || |||||||||| | || |||||
Sbjct 1120 TAGATAGTTATGGTGAG-AGTGAATGCGATGAGT-TTGTGTTCCAGAAAAT-GGAGAAAC 1176
Query 1417 GAGAAGGAAAAGGTCTGAAGATGGATCCTAGTTCGAA-TACCAA-AGGCTCCACGTC-TA 1473
||||||| |||| ||| ||| |||| |||||| | | || ||| || ||| | | ||
Sbjct 1177 GAGAAGGCAAAGCTCTTAAGCTGGAAGCTAGTT-GCAGTAGCAAGAG-CTCGTC-TAATA 1233
Query 1474 AGTC-TT-TTATGAAATGGCACTTCGGTTCCGTCAGCACCAAGTGGAGTAAA-----G-C 1525
|||| || ||| ||||||||||| | ||| ||||| ||||||||| |||| | |
Sbjct 1234 AGTCATTCTTA--AAATGGCACTTTGCTTCTATCAGCTCCAAGTGGAATAAACCCTCGTC 1291
Query 1526 CAGGGATTCTACCTCGAAGAAGAGCTTTTGGTCCAGACATAGTAATAA 1573
|| || ||| | | ||||||| | || ||||| |||||| |||||||
Sbjct 1292 CAAAGACTCTGCATTGAAGAAGGGGTTCTGGTCTAGACATCGTAATAA 1339
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67762545855
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5