BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19690.1
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911792 jgi|Araly1|911792|Al_scaffold_0001_2046 1581 0.0
> Ahg911792 jgi|Araly1|911792|Al_scaffold_0001_2046
Length=1062
Score = 1581 bits (856), Expect = 0.0
Identities = 997/1065 (94%), Gaps = 9/1065 (1%)
Strand=Plus/Plus
Query 8 ATGGCGGTTTTTCAGTTACCAAGTTTGTCACCGGAGATTCCTT-TCCGTTTTACTCCCAC 66
|||||||||||||||||||||| |||||| ||||||||| ||| |||||||| |||| ||
Sbjct 1 ATGGCGGTTTTTCAGTTACCAAATTTGTCGCCGGAGATT-CTTCTCCGTTTTTCTCCTAC 59
Query 67 ACCACTTAAATTTT-CAAATCGTAGGAGAATCAACTTTTTCCGGCCATTATCAGCAACCG 125
||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| | ||
Sbjct 60 ACCACTT-GATTTTATAAATCGTAGGAGAATCAACTTTTTCCGGCCATTGTCAGCGATCG 118
Query 126 ACGATTCTCGATCCGGTGCACCAGATCCAGAATCGCCG-AACCAAATGTTCATTCTCGGG 184
|||||||| ||||| |||||||||| ||||||| || |||| ||||||||||||||
Sbjct 119 GCGATTCTCAATCCGTTGCACCAGATTCAGAATC-ACGAAACCGGATGTTCATTCTCGGA 177
Query 185 ATGGGATTCGTCGGAGGtttttttGCGCAACAGCTCAAAGAATCAGACTGGGTGGTTTCA 244
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 178 ATGGGATTCGTCGGAGGATTTTTTGCGCAACAGCTCAAAGAAGCAGACTGGGTGGTTTCA 237
Query 245 GGGACTTGCAGGAGTGATTCTAAGAAGAAAGAATGGGAAAAGAGAGGAATTAATCTTCAT 304
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 238 GGGACTTGCAGGAGTGATTCGAAGAAGAAAGAATGGGAAAAGAGAGGAATCAATCTTCAT 297
Query 305 CCATTTTCTGCAGACTCACCTGAATGGAGC-T--TGCTAGATTCAGTGAAAGATTACACT 361
|||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 298 CCATTTTCTGCAGATTCACCTGAATGGAGCTTGCTGCTAGATTCAGTGAAAGATTACACT 357
Query 362 CATCTACTCATTTCCATTCCTCCTTTAGCTGACATTGGTGATCCGATGTTGCGGAATGTA 421
|| || || ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 358 CACCTGCTTATTTCCATTCCACCTTTAGCAGACATTGGTGATCCGATGTTGCGGAATGTG 417
Query 422 GAACTTGTGAGAGACAAGCTTTCGAGTGGAAATCTTCGATGGCTTTGTTATCTCTCATCA 481
|||||||| |||||||| ||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 418 GAACTTGTTAGAGACAAACTTTCTAGTGGAAATCTTCGATGGCTTTGTTATCTTTCATCA 477
Query 482 ACAAGTGTGTATGGAGATTGTGGTGGTGCGTGGGTCAATGAAAATCATCTCCCAAATCCT 541
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 478 ACAAGTGTGTATGGAGATTGTCGTGGTGCGTGGGTCAATGAAAATCATCCCCCAAATCCT 537
Query 542 AAAACTCAGTCAGCCAAAGTGAGATTAGCTGCAGAACAAGGATGGTTAAGCTTGGGTCGT 601
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 538 AAAACTCAGTCAGCCAAAGTGAGATTAGCCGCAGAGGAAGGATGGTTAAGCTTGGGTCGT 597
Query 602 GATCTTGGGGTTTCGACTCAAATACTTCGACTTGGGGGTATTTATGGACCTGGTCGAAGT 661
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 598 GATCTTGGGGTTTCGACTCAAATACTTCGACTTGGAGGTATCTATGGACCTGGTCGAAGT 657
Query 662 GCAATTGATACCTTGTTAAAGCAGGAGCGTTTGTCTGAAGGTCAAAAGAGAAGAGCGTCC 721
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 GCTATTGATACCTTGTTAAAGCAGGAGCGTTTGTCTGAAGGTCAAAAGAGAAGAGCGTCC 717
Query 722 CGTAAATTCACGTCGAGAGTTCATGTTGAAGATATATGCCAAGTTCTTAAAGCTGCCACT 781
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 718 CGTAAATTCACGTCCAGAGTTCATGTTGAAGATATATGCCAAGTTCTCAAAGCTGCCACT 777
Query 782 GAAAAGCCAGCATCAGGGGAGATCTACAATATTGTTGATGATGATCCGGCAGCAAGAGAA 841
||||||||| |||||||||| ||||||||| |||||||||||||||||||| ||||||||
Sbjct 778 GAAAAGCCATCATCAGGGGAAATCTACAATGTTGTTGATGATGATCCGGCACCAAGAGAA 837
Query 842 GAGGTGTTTGAATATGCCTTGGAGTTGATCGAGAAACGTTGGCCGGGGAATATCACCACA 901
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 838 GAGGTGTTTGAATATGCCTTGGAGTTGATCGAGAAACGTTGGCCAGGGATTATCAACACA 897
Query 902 AAACCATTTCCATTTCTGTATGAATCTCGGGAGGAAAGTTCATTGAGAGGCGAGAAACGA 961
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 898 AAACCATTTCCATTTCTGTATGAATCTCGGGAGGAGAGTTCATTGAGAGGCGAAAAACGA 957
Query 962 GTCTGCAACGAACGCATGAAGGATAAACTAGGAGTGAAATTGTTATATCCTTCGTATAAG 1021
||| ||||||||| ||||||| |||||||||||||||||||| |||||||||| || |||
Sbjct 958 GTCCGCAACGAACACATGAAGAATAAACTAGGAGTGAAATTGATATATCCTTCATACAAG 1017
Query 1022 TCAGGACTGCAAAGCATAGTCGAGAACATGGACAACCGTTTTTGA 1066
|||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1018 TCAGGATTGCAAAGCATAGTCGAGAACATGGACAACCCTTTTTGA 1062
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47691769167
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5