BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19700.1
Length=2022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472196 jgi|Araly1|472196|fgenesh2_kg.1__2150__AT1G19700.1 3040 0.0
Ahg476691 jgi|Araly1|476691|fgenesh2_kg.2__1821__AT1G75410.1 634 0.0
> Ahg472196 jgi|Araly1|472196|fgenesh2_kg.1__2150__AT1G19700.1
Length=1998
Score = 3040 bits (1646), Expect = 0.0
Identities = 1910/2031 (94%), Gaps = 43/2031 (2%)
Strand=Plus/Plus
Query 2 TCTCTATCTCTCTCGGGATTGGGTCTCAAATCtttttttGTCTTCAACTGTTCGAAACTC 61
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 TCTCTATCTCTCTCGGGATTGGGTCTCAAATCTTTTTTTGTCTTCAACTGTTGGAAACTC 60
Query 62 TTCTGCTTTTGTGTTTCCTGATTCAGCCACATCCACACTCACAAACACAATCTCTAGGAT 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTGCTTTTGTGTTTCCTGATTCAGCCACATCCACACTCACAAACACAATCTCTAGGAT 120
Query 122 CTCATTTCCCGACCAAACTCATCGAACTAAGAACTCACTGTAATAAAACT-TTTAAAAGG 180
||||||||||||||||| |||||||||| ||||||||||||||||||||| |||| |
Sbjct 121 CTCATTTCCCGACCAAATTCATCGAACTGAGAACTCACTGTAATAAAACTAAAAAAAAAG 180
Query 181 TGTAAACACCAATGGCAGTTTATTACACAAGTAATGTCGGTTGTTACCAGCAAGAACCAA 240
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 -GTAAACACCAATGGCGGTTTATTACCCAAGTAATGTCGGTTGTTACCAGCAAGAACCAA 239
Query 241 TCTTTCTCAACCATCAACAACAAAACCAACAAGCTTCTTCTTCATCCGCCGCCGCTTCTT 300
|||||||||||||| |||| || ||||||||||||||||| ||||||||||||||||
Sbjct 240 TCTTTCTCAACCAT---CAAC--AA-CAACAAGCTTCTTCTTCCTCCGCCGCCGCTTCTT 293
Query 301 TCACCGTCACCGGCGGCGATACTGTTCGAAACGAGATGGTTTTTATCCCACCAACCACCA 360
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 294 TCACCGTCACCGGCGGCGATAATGTTCGAAACGAGATGGTTTTTATCCCACCCACCACCA 353
Query 361 CAGGAGACGTTGTAACAGGAAACGGTACCGTTTCAAGCAGCGATCTAAGCTTTCACGATG 420
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 354 CAGGAGACGTAGTAACAGGAAACGGTGCCGTTTCTAGCAGCGATCTAAGCTTTCACGATG 413
Query 421 GTCAAGGACTGTCTTTGAGCCTTGGTACTCAGATCTCTGTTGCTCCGTTTCACTTTCATC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 GTCAAGGACTGTCTTTGAGCCTTGGTACTCAGATCTCTGTTGCTCCGTTTCACTTTCATC 473
Query 481 AATACCAATTGGGGTTTACTAGTCAGAATCCTTCAATTTCAGTCAAGGAAACGTCACCGT 540
|||||||||| |||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 474 AATACCAATT-GGGTTT--TACTCAAAATCCTTCAATTTCAGTCAAGGAAACGTCACCGT 530
Query 541 TTCATGTGGATGAGATGAGTGTGAAGAGCAAAGAAATGATCTTGTTGGGTCAATCTGATC 600
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 531 TTAATGTGGATGAGATGAGTGTGAAGAGCAAAGAAATGATGTTGTTGGGTCAATCTGATC 590
Query 601 CTTCCTCTGGTTATGCTGGTAATGGTGGGAATGGCTTCTACAACAATTATCGGTATAATG 660
||||||||||||||||||| | || || | |||||||||||||||||||||||||
Sbjct 591 CTTCCTCTGGTTATGCTGG-GA--GT-GG-A----TTCTACAACAATTATCGGTATAATG 641
Query 661 AGACATCAGGAGGGTTTATGAGCAGCGTTCTGCGTTCTCGGTATCTTAAACCTGCTCAGA 720
||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||
Sbjct 642 AGACATCAGGAGGGTTTATGAGCAGCGTTTTGCGGTCTCGGTATCTTAAACCGGCTCAGA 701
Query 721 ATTTGCTTGATGAAGTGGTTAGTGTCAAGAAAGAACTAAACCAAATGGGGAAGAAGAAGA 780
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 702 ATTTGCTTGATGAAGTGGTTAATGTCAAGAAAGAACTTAACCAAATGGGGAAGAAGAAGA 761
Query 781 TGAAAGTTAATGACTTTAACAGTGGTTCTAAGGAGATAGAAGGAGGA-G--GTGGTGAGT 837
||||||||||||||||||||| ||||||||||||||||||||||||| | |||| ||||
Sbjct 762 TGAAAGTTAATGACTTTAACAATGGTTCTAAGGAGATAGAAGGAGGAGGTAGTGGCGAGT 821
Query 838 TATCGAGTGATTCGAATGGGAAATCGATTGAGTTATCTACAATTGAACGTGAAGAGCTTC 897
|||||| |||||||||||| |||||||| |||||||||||| |||||||||| |||||||
Sbjct 822 TATCGAATGATTCGAATGGCAAATCGATGGAGTTATCTACAGTTGAACGTGAGGAGCTTC 881
Query 898 AGAACAAGAAGAACAAGCTTTTAACAATGGTTGATGAGGTAGATAAAAGATATAACCAAT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 882 AGAACAAGAAGAACAAGCTTTTAACAATGGTTGATGAGGTAGATAAAAGATATAACCAAT 941
Query 958 ATTACCATCAAATGGAAGCATTAGCTTCATCATTTGAGATAGTAGCAGGACTTGGATCAG 1017
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 942 ATTACCATCAAATGGAAGCATTAGCTTCATCATTTGAGATAGTAGCAGGACTTGGATCAG 1001
Query 1018 CTAAGCCTTACACATCAGTTGCTCTCAACAGAATCTCTCGCCATTTTCGTGCTCTTCGCG 1077
||||| | ||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1002 CTAAGGCGTACACATCAGTCGCTCTCAACAGAATCTCTCGCCATTTCCGTGCTCTTCGCG 1061
Query 1078 ACGCAATAAAGGAACAAATTCAGATTGTTAGAGAAAAACTTGGGGAGAAAGGAGGAGAGT 1137
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1062 ACGCAATAAAGGAACAAATTCAGATTATTAGAGAGAAACTTGGGGAGAAAGGAGGAGAGT 1121
Query 1138 CGTTGGATGAGCAACAAGGAGAGAGGATACCAAGG-TTGAGGTATTTAGATCAACGGTTG 1196
||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||
Sbjct 1122 CGTTGGATGAGCAACAAGGAGAGAGAATACCAAGGCTT-AGGTATTTAGATCAACGGTTG 1180
Query 1197 AGACAGCAAAGAGCTTTGCATCAACAGCTTGGAATGGTTCGACCTGCTTGGAGACCTCAA 1256
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1181 AGACAGCAAAGAGCTTTGCATCAACAGCTTGGAATGGTTCGACCCGCTTGGAGACCTCAA 1240
Query 1257 AGAGGTCTTCCTGAAAACTCTGTCTCTGTTCTTCGCGCTTGGCTCTTTGAACATTTCCTT 1316
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1241 AGAGGTCTTCCTGAAAACTCTGTATCTGTTCTTCGCGCTTGGCTCTTCGAACATTTCCTT 1300
Query 1317 CATCCATATCCGAAAGAATCTGAGAAAATCATGCTTGC-AAAGCAGACAGGATTGTCAAA 1375
|||||||| ||||||||||||||||||||||||||||| ||| ||||||||| |||||||
Sbjct 1301 CATCCATACCCGAAAGAATCTGAGAAAATCATGCTTGCGAAA-CAGACAGGACTGTCAAA 1359
Query 1376 GAACCAGGTTGCTAATTGGTTCATAAACGCGAGAGTTCGTCTGTGGAAACCGATGATCGA 1435
||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||
Sbjct 1360 AAACCAGGTTGCTAATTGGTTCATTAATGCGAGAGTCCGTCTATGGAAACCGATGATCGA 1419
Query 1436 AGAAATGTATAAAGAAGAGTTTGGTGATGAATCTGAGTTACTAATCTCCAAATCTTCCCA 1495
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1420 AGAGATGTATAAAGAAGAATTTGGTGATGAATCTGAGTTACTAATCTCCAAATCTTCCCA 1479
Query 1496 AGAACCCAACAGCACAAACCAAGAAGACTCCTCATCgcagcagcagcagcagcaAGAGAA 1555
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1480 AGAACCCAACAGCACAAACCAAGAAGACTCCTCGTCGCAGCAGCAGCAGCAGCAAGAGAA 1539
Query 1556 CAACAACAACAGCAACCTCGCTTATTCATCTGCAGACACAACAAACATTGTCTTCTCATC 1615
|||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1540 CAACAACAAC--C----TCACTTATTCATCTGCAGACACAACAAACATTGTCTTCTCATC 1593
Query 1616 AGAAACCAAACCAGATCGTGTTCTAGGCAATGATAACGACCCACAGCAACAACAGATAAA 1675
|||||| |||||||| ||||||||||||||||||||||| ||||| |||| || |||||
Sbjct 1594 AGAAACTAAACCAGACCGTGTTCTAGGCAATGATAACGAGCCACAACAACCGCAAATAAA 1653
Query 1676 CCGCTCATCGGATTACGACACTCTGATGAACTATCACGGGTTTGGTGTTGATGATTACCG 1735
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 CAGGTCATCGGATTACGACACTCTGATGAACTATCACGGGTTTGGTGTTGATGATTACCG 1713
Query 1736 TTACATTAGCGGAAGCAACCAGCAAGAAAGCAGATTCTCCAATTCCCATCACTTACACGA 1795
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1714 TTACATAAGCGGAAGCAACCAGCAAGAAAGCAGATTCTCCAATTCCCATCACTTACACGA 1773
Query 1796 CTTTGTTGTGTGAT--AT--TATCTGGTTCTTCTTGGTACAGAGGAGATGATTCTTGAAG 1851
||||||||| |||| || |||||||||||| || |||||||| |||||||||||||
Sbjct 1774 CTTTGTTGTTTGATTGATAGTATCTGGTTCTT---GGCACAGAGGACATGATTCTTGAAG 1830
Query 1852 CGCAAGAAATGTGCTTTTGCATTTTTATAGTATTAGGCATAATACACCCATTCTCTATGG 1911
||||||||||| |||| |||| ||||||||| ||||||||||||||| |||| ||| |||
Sbjct 1831 CGCAAGAAATGCGCTTCTGCAATTTTATAGTTTTAGGCATAATACACACATTGTCTGTGG 1890
Query 1912 ATTATATAGTAGATGTGTAGGTTGCTTTTGTGTATAGTAGACTCTTAAGCCAAATATTGA 1971
| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1891 AATATATAGTAGATGTGTAGGTTGCTTTTGTGTATAGTACACTCGTAAGCCAAATATTGA 1950
Query 1972 TATGTGTGTATAATAATATTCACGGTGGTATAAAGGATACTTGCAAGTGTG 2022
| ||||||||||| | | | |||||||||||||||||||||||||||||||
Sbjct 1951 TGTGTGTGTATAAGA-T-T-CACGGTGGTATAAAGGATACTTGCAAGTGTG 1998
> Ahg476691 jgi|Araly1|476691|fgenesh2_kg.2__1821__AT1G75410.1
Length=2084
Score = 634 bits (343), Expect = 0.0
Identities = 717/886 (81%), Gaps = 71/886 (8%)
Strand=Plus/Plus
Query 617 TGGTAATGGTGGGAATGGCTTCTACAACAATTATCGGTATAATGAGACATCAGGAGGGTT 676
|||||||||| | ||| |||||||||||||| | || | | |||||||| ||||||
Sbjct 656 TGGTAATGGT--G-TTGGTTTCTACAACAATTA-CCGT-T-ACGAGACATC---AGGGTT 706
Query 677 TATGAGCAGCGTTCTGCGTTCTCGGTATCTTAAACCTGCTCAG-AATTTGCTTGATGAAG 735
| |||| || |||||| | ||||| || |||||||| | ||| || |||||||||||||
Sbjct 707 TGTGAGTAGTGTTCTGAGATCTCGTTACCTTAAACCAACACAGCAA-TTGCTTGATGAAG 765
Query 736 TGGTTAGTGTCAA-GAAAGAACTAAACCAAATGGGGAAGAAGAAGATGAAAGTTAATGAC 794
| |||||||| || ||||| | | | || ||||||| ||||||||| ||| || ||
Sbjct 766 TTGTTAGTGT-AAGGAAAG-ATTTGA--AATTGGGGAATAAGAAGATG-AAG--AACGA- 817
Query 795 TTTAACAGTGGTTCTAAGGA-GAT-AGAA--GGAGGAGGTGGTGA-GTTATCGAG-TGAT 848
||| | || || || || | | || || || ||| | | ||| | || |||
Sbjct 818 --TAA-A--GG-TC-AA-GACTTTCAAAATGGGTCGA-GTGATAACATTA-C-AGAAGAT 866
Query 849 TCG-AATGGGAAATCG-ATTGAGTTATCTACAATT--GAACGTGAAGAGCTTCAGAACAA 904
| ||| ||||| | ||||||||| | || |||||| | ||||| |||| |||
Sbjct 867 GAGAAAT-CTCAATCGCA-GGAGTTATCT-C-CTTCAGAACGTCAGGAGCTACAGAGCAA 922
Query 905 GAAGAACAAGCTTTTAACAATGGTTGATGAGGTAGATAAAAGATATAACCAATATTACCA 964
||||| |||||| ||||||||||| ||||||||||||||||| ||||||||||| ||||
Sbjct 923 GAAGAGCAAGCTCTTAACAATGGTGGATGAGGTAGATAAAAGGTATAACCAATACCACCA 982
Query 965 TCAAATGGAAGCATTAGCTTCATCATTT-GAGATAGTAGCAGGACTTGGATCAGCTAAGC 1023
|||||||||||| ||||| || || ||| ||||| ||| |||| |||||| |||||||||
Sbjct 983 TCAAATGGAAGCTTTAGCATCGTC-TTTCGAGATGGTAACAGGTCTTGGAGCAGCTAAGC 1041
Query 1024 CTTACACATCAGTTGCTCTCAACAGAATCTCTCGCCATTTTCG-TGCTCTTCGCGACGCA 1082
|||||||||| || ||||| || ||||||||||||||||| || |||| | ||||| ||
Sbjct 1042 CTTACACATCGGTCGCTCTGAATAGAATCTCTCGCCATTTCCGCTGCT-TGCGCGATGCG 1100
Query 1083 ATAAAGGAACAAATTCAGATTGTTAGAGAAAAACTTGGGGAGAAAGGAGGAGAGTCGTTG 1142
||||| || || |||||| | | |||| || ||||||||| | || |||| | ||
Sbjct 1101 ATAAAAGAGCAGATTCAGGTAATCAGAGGGAAGCTTGGGGAG--A-GA-GAGA--C-TT- 1152
Query 1143 GATGA-GCAACAAGGAGAGAGGATACCAAG-GT-TGAGGTATTTAGATCAACGGTTGAGA 1199
||| | ||||||||||||||||||| | || ||||||||||||||||||||||||||
Sbjct 1153 -CTGATG-AACAAGGAGAGAGGATACC--GCGTCTGAGGTATTTAGATCAACGGTTGAGA 1208
Query 1200 CAGCAAAGAGCTTTGCATCAACAGCTTGGAATGGTTCGACCTGCTTGGAGACCTCAAAGA 1259
|| || |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||
Sbjct 1209 CAACAGAGAGCTTTGCATCAACAGCTTGGAATGGTTAGACCAGCTTGGAGACCACAAAGA 1268
Query 1260 GGTCTT-CCTGAAAACTCTGTCTCTGTTCTTCGCGCTTGGCTCTTTGAACATTTCCTTCA 1318
|| ||| |||||||||||||||||| | || || |||||||||||||| |||||||||||
Sbjct 1269 GG-CTTACCTGAAAACTCTGTCTCTATACTCCGAGCTTGGCTCTTTGAGCATTTCCTTCA 1327
Query 1319 TCCATATCCGAAAGAATCTGAGAAAATCATGCTTGCAAAGCAGACAGGATTGTC-AAAGA 1377
||||||||| |||||||| ||||||||||||||| |||||||||||||| | || ||| |
Sbjct 1328 TCCATATCCTAAAGAATCAGAGAAAATCATGCTTTCAAAGCAGACAGGACTATCGAAA-A 1386
Query 1378 ACCAGGTTGCTAATTGGTTCATAAACGCGAGAGTTCGTCTGTGGAAACCGATGATCGAAG 1437
|||||||||| |||||||| || |||||||||||||| || |||||||||||||||||||
Sbjct 1387 ACCAGGTTGCAAATTGGTTTATTAACGCGAGAGTTCGACTATGGAAACCGATGATCGAAG 1446
Query 1438 AAATGTATAAAGAAGAGTTTGGTGA-TGAATCTGAGTTACTAATCT 1482
| |||||||||||||||||||| || | | | ||||||||| |||
Sbjct 1447 AGATGTATAAAGAAGAGTTTGGAGACTCAG-CAGAGTTACTA-TCT 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76028129020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5