BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19710.1
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920921 jgi|Araly1|920921|scaffold_102202.1 2350 0.0
> Ahg920921 jgi|Araly1|920921|scaffold_102202.1
Length=1485
Score = 2350 bits (1272), Expect = 0.0
Identities = 1416/1486 (95%), Gaps = 8/1486 (1%)
Strand=Plus/Plus
Query 111 AGCTGTAGAG-AGAAACAATGGCGAAGCCATCAACGAGTATGTGGGCAACATTGCAGAAG 169
|||||| ||| || || ||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 3 AGCTGTGGAGAAGGAATAATGGGGAAGCCATCAACGAGTGTGTGGGCAACATTGCAGAAG 62
Query 170 AAGAGATGGCCACTGATGATTCTATTGGTTTTATCTGTATCAACAGTAGGAATGATTCTC 229
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 63 AAGAGATGGCCTCTGATGATTCTCTTGGTTTTATCTGTATCAACAGTAGGAATGATTCTC 122
Query 230 GTGAGATCTACTTTTGATTCCTGTAGTGTTAGTGGAAAGAGATGTAGCCGAGAGAAGGAA 289
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 123 GTGAGATCTACTTTTGATTCCTGTAGTGTTAGTGGAAAGAGGTGTGGCCGAGAGAAGGAA 182
Query 290 G---ATAACAGTGACATTAAGATCCAATCGGTTTCTGGATCGTTGAATCCTCTCGAG-TT 345
| ||||||||||| |||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 183 GATAATAACAGTGACGTTAAGATCCAATCGGTTTCTGGATCGTTGAATCCGCTCG-GTTT 241
Query 346 CATGAAATCAAAGCTCGTTTTACTTGTTTCTCATGAACTCTCGCTCTCAGGTGGACCTTT 405
||||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 242 CATGAAATCGAAGCTCGTTTTGCTTGTTTCTCACGAGCTCTCGCTCTCAGGTGGACCTTT 301
Query 406 ATTGTTAATGGAATTGGCGTTTTTGCTTAGAGGAGTTGAATCTGAAGTTGTTTGGATCAC 465
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 GTTGTTAATGGAATTGGCGTTTTTGCTTAGAGGAGTTGAATCTGAAGTTGTTTGGATCAC 361
Query 466 GAATCAGAAACCAGTTGAAGAAGATGAAGTGATCAAGGTTCTAGAACACAAGATGTTGGA 525
|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 362 GAATCAGAAACCAGTTGAAGAAGATGAAGTGATCAAGGTTTTGGAACACAAGATGTTGGA 421
Query 526 TCGAGGAGTCCAGGTGATATCAGCAAAGAGTCAGAAAGCTATAGATACAGCTCTCAAGTC 585
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 422 TCGAGGAGTGCAGGTTATATCAGCAAAGAGTCAGAAAGCTATAGATACAGCTCTTAAGTC 481
Query 586 TGATCTGGTTGTTTTAAACACTGCTGTTGCTGGGAAATGGCTTGATGCAGTTCTCAAGGA 645
|||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||
Sbjct 482 TGATTTGGTTGTGTTGAATACTGCTGTTGCTGGGAAATGGCTTGATGCAGTTCTCAAGGA 541
Query 646 CAATGTTCCTAAAGTTCTTCCTAAAGTACTCTGGTGGATTCATGAGATGAGAGGTCACTA 705
||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 542 CAATGTTCCTATAGTTCTTCCCAAAATACTCTGGTGGATTCATGAGATGAGAGGTCACTA 601
Query 706 TTTCAAACCGGATTTAGTCAAGCACCTTCCGTTTGTTGCAGGTGCTATGATTGATTCGCA 765
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 602 TTTCAAACCGGATTTAGTCAAGCACCTTCCGTTTGTTGCAGGCGCTATGATTGATTCACA 661
Query 766 CGCAACAGCTGAATACTGGAAGAACAGAACTCATGATCGCTTAGGGATTAAAATGCCTAA 825
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 662 CGCAACAGCTGAATACTGGAAGAATAGAACTCATGATCGCTTAGGGATTAAAATGCCTAA 721
Query 826 AACTTATGTCGTGCACCTAGGAAATAGCAAGGAGTTGATGGAAGTAGCTGAAGATAGTTT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 722 AACTTATGTCGTGCACCTAGGAAATAGCAAGGAGTTGATGGAAGTAGCTGAAGATAGGTT 781
Query 886 CGCCAAGAATGTTCTCCGTGAGCAAGTTCGAGAATCTCTTGGAGTGAGGAATGAAGACAT 945
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 782 CGCCAAGAATGTTCTCCGTGAGCAAGTTCGAGAATCTCTTGGAGCGAGGAATGAAGACAT 841
Query 946 ACTATTTGGCATTATTAATAGTGTATCTCGAGGAAAGGGCCAAGATCTATTCCTCCGAGC 1005
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 842 ACTATTTGGCATTATTAATAGTGTATCTCGAGGAAAGGGCCAAGATCTATTCCTCCGATC 901
Query 1006 GTTCCATGAAAGTCTTAAAGTAATCAAAGAGACTAAGAAACTTGAGGTACCAACAATGCA 1065
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 CTTCTATGAAAGTCTTAAAGTAATCAAAGAGACTAAGAAACTTGAGGTACCAACAATGCA 961
Query 1066 TGCAGTGGTAGTAGGAAGCGATATGAGCGCACAGACGAAATTTGAGACAGAGCTACGCAA 1125
|||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 962 TGCAGTGGTAGTAGGAAGTGATATGAGCGCACAGACGAAATTCGAGACAGAGTTACGCAA 1021
Query 1126 CTTTGTCCAAGAGATGAAACTTCAAAAAATTGTCCACTTTGTCAACAAAACAATGAAGGT 1185
|||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1022 CTTTGTCCAAGAGAAGAAACTTCAGAAAATTGTCCACTTTGTTAACAAAACAATGAAAGT 1081
Query 1186 AGCACCATATTTAGCAGCTATTGACGTTCTTGTCCAAAACTCCCAAGCCAGAGGAGAATG 1245
|||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1082 AGCACCATATCTAGCGGCTATTGATGTTCTTGTCCAAAACTCCCAAGCCAGAGGAGAATG 1141
Query 1246 CTTTGGGAGAATAACAATTGAAGCCATGGCCTTTAAGCTTCCTGTACTTGGGACTGCAGC 1305
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1142 CTTTGGGAGAATAACAATCGAAGCTATGGCCTTTAAGCTTCCTGTACTTGGGACTGCAGC 1201
Query 1306 AGGAGGCACAATGGAGATTGTAGTGAACAGAACAACAGGTCTATTGCACAACACTGGTAA 1365
|||||| ||||||||||||||||||||||||||||| |||||||| |||||||| |||||
Sbjct 1202 AGGAGGGACAATGGAGATTGTAGTGAACAGAACAACCGGTCTATTACACAACACCGGTAA 1261
Query 1366 AGATGGCGTGTTACCTCTCGCCAAAAACATTGTGAAGCTGGCGACTAACGTGAAGATGAG 1425
|||||||||||||||||| || ||||||||||||||||||||||||||| || |||||||
Sbjct 1262 AGATGGCGTGTTACCTCTTGCTAAAAACATTGTGAAGCTGGCGACTAACATGGAGATGAG 1321
Query 1426 GAATACAATGGGGAAGAAAGGGTATGAGAGGGTAAAAGAGATGTTCTTGGAACATCATAT 1485
|| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1322 GAGGACAATGGGGAAGAAAGGGTACGAGAGGGTAAAAGAGATGTTCTTGGAACATCATAT 1381
Query 1486 GTCTCATCGAATAGCTTCTGTGCTCAGAGAAGTGTTGCAACATGCAAAAATTCACTCACG 1545
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1382 GTCTCATCGAATAGCTTCTGTGCTCAGAGAAGTGTTGCAACACGCAAAAATTCACTCACG 1441
Query 1546 AACAACCAATTCGGATCATTAAACAAAAGTTTAGCAAGGAAATGCC 1591
||||||||||||||||||||||||| | ||||||| |||||||||
Sbjct 1442 AACAACCAATTCGGATCATTAAACACA--TTTAGCACGGAAATGCC 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64791506745
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5