BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G19730.1 Length=710 Score E Sequences producing significant alignments: (Bits) Value Ahg920924 jgi|Araly1|920924|scaffold_102205.1 606 6e-173 > Ahg920924 jgi|Araly1|920924|scaffold_102205.1 Length=400 Score = 606 bits (328), Expect = 6e-173 Identities = 375/398 (94%), Gaps = 1/398 (0%) Strand=Plus/Plus Query 35 TCTCAGATTTGGGAGAAATGGCGGCAGAAGAGGGTCAAGTGATTGGTTGTCACACGAACG 94 |||||||||||| ||||||||||||||||||||| |||||||||||||| ||| | |||| Sbjct 4 TCTCAGATTTGGAAGAAATGGCGGCAGAAGAGGGACAAGTGATTGGTTGCCACGCCAACG 63 Query 95 ATGTATGGACTGTGCAACTTGATAAAGCCAAAGAATCCAACAAGCTGATTGTGATTGATT 154 |||||||||| |||||||| || |||||||||||||||||||||||||||||||| |||| Sbjct 64 ATGTATGGACCGTGCAACTCGACAAAGCCAAAGAATCCAACAAGCTGATTGTGATAGATT 123 Query 155 TCACTGCTTCATGGTGTCCACCATGCCGCATGATTGCTCCAATTTTCAACGATTTGGCCA 214 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 124 TCACTGCTTCATGGTGTCCACCATGCCGCATGATTGCTCCTATTTTCACCGATTTGGCCA 183 Query 215 AGAAGTTCATGTCAAGTGCCATCTTCTTCAAGGTGGATGTTGATGAACTTCAGAGTGTTG 274 |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 184 AGAAGTTCGTGACAAGTGCCATCTTCTTCAAGGTCGATGTTGATGAACTTCAGAGTGTAG 243 Query 275 CTAAAGAGTTTGGTGTGGAGGCAATGCCAACCTTTGTGTTCATTAAAGCCGGCGAAGTTG 334 || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 244 CTCAAGAGTTTGGTGTGGAGGCAATGCCAACCTTTGTGTTCATTAAAGCCGGCGAGGTTG 303 Query 335 TGGATAAGCTCGTTGGTGCGAATAAAGAAGATCTTCAGGCGAAAATAGTGAAGCATACTG 394 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 304 TGGATAAGCTCGTTGGTGCAAATAAAGAAGATCTTCAGGCGAAAATAGTGAAGCATACTG 363 Query 395 GTGTTACAACTGCGTAAATCAGTTTGAGGCATAAATAA 432 ||||| | ||||| ||||||||||| |||||||| ||| Sbjct 364 GTGTTGCCACTGCTTAAATCAGTTTTAGGCATAA-TAA 400 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26114198145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5