BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G19730.1

Length=710
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920924 jgi|Araly1|920924|scaffold_102205.1                        606    6e-173


> Ahg920924 jgi|Araly1|920924|scaffold_102205.1
Length=400

 Score =  606 bits (328),  Expect = 6e-173
 Identities = 375/398 (94%), Gaps = 1/398 (0%)
 Strand=Plus/Plus

Query  35   TCTCAGATTTGGGAGAAATGGCGGCAGAAGAGGGTCAAGTGATTGGTTGTCACACGAACG  94
            |||||||||||| ||||||||||||||||||||| |||||||||||||| ||| | ||||
Sbjct  4    TCTCAGATTTGGAAGAAATGGCGGCAGAAGAGGGACAAGTGATTGGTTGCCACGCCAACG  63

Query  95   ATGTATGGACTGTGCAACTTGATAAAGCCAAAGAATCCAACAAGCTGATTGTGATTGATT  154
            |||||||||| |||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct  64   ATGTATGGACCGTGCAACTCGACAAAGCCAAAGAATCCAACAAGCTGATTGTGATAGATT  123

Query  155  TCACTGCTTCATGGTGTCCACCATGCCGCATGATTGCTCCAATTTTCAACGATTTGGCCA  214
            |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct  124  TCACTGCTTCATGGTGTCCACCATGCCGCATGATTGCTCCTATTTTCACCGATTTGGCCA  183

Query  215  AGAAGTTCATGTCAAGTGCCATCTTCTTCAAGGTGGATGTTGATGAACTTCAGAGTGTTG  274
            |||||||| || |||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct  184  AGAAGTTCGTGACAAGTGCCATCTTCTTCAAGGTCGATGTTGATGAACTTCAGAGTGTAG  243

Query  275  CTAAAGAGTTTGGTGTGGAGGCAATGCCAACCTTTGTGTTCATTAAAGCCGGCGAAGTTG  334
            || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  244  CTCAAGAGTTTGGTGTGGAGGCAATGCCAACCTTTGTGTTCATTAAAGCCGGCGAGGTTG  303

Query  335  TGGATAAGCTCGTTGGTGCGAATAAAGAAGATCTTCAGGCGAAAATAGTGAAGCATACTG  394
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  304  TGGATAAGCTCGTTGGTGCAAATAAAGAAGATCTTCAGGCGAAAATAGTGAAGCATACTG  363

Query  395  GTGTTACAACTGCGTAAATCAGTTTGAGGCATAAATAA  432
            ||||| | ||||| ||||||||||| |||||||| |||
Sbjct  364  GTGTTGCCACTGCTTAAATCAGTTTTAGGCATAA-TAA  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26114198145


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5