BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19740.1
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472201 jgi|Araly1|472201|fgenesh2_kg.1__2155__AT1G19740.1 1648 0.0
Ahg888054 jgi|Araly1|888054|Al_scaffold_0007_40 929 0.0
Ahg905790 jgi|Araly1|905790|Al_scaffold_0003_2918 826 0.0
Ahg936587 jgi|Araly1|936587|scaffold_500778.1 717 0.0
Ahg927517 jgi|Araly1|927517|scaffold_203078.1 717 0.0
Ahg949441 jgi|Araly1|949441|scaffold_801328.1 712 0.0
Ahg327886 jgi|Araly1|327886|fgenesh1_pm.C_scaffold_7000113 446 2e-124
> Ahg472201 jgi|Araly1|472201|fgenesh2_kg.1__2155__AT1G19740.1
Length=1080
Score = 1648 bits (892), Expect = 0.0
Identities = 1028/1091 (94%), Gaps = 19/1091 (2%)
Strand=Plus/Plus
Query 15 TAAAATCTTAAATCAATTTCGCCGTTCACTTGTGAAACCTCTCCTCCTTCACTCTCTCTA 74
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 1 TAAAATCTTAAATCAATTTCGCCCTTCACTTGTGAAATCTCTCCTCCTTCACTCTCTCTA 60
Query 75 ATGGCGCTTCCAAGCACTGTCTCATCTCCTTCCTTCAAATCAACTCCACCTTATCTCTCC 134
||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||
Sbjct 61 ATGGCGCTTCCAAGCACAGTCTCATCTCCTTCCTTCAAATCAACTCCGCCGTATCTCTCC 120
Query 135 GCCTTCAACCCTAAACCTCTACATCTTCCAGCTACTTACCGGAGCATCAACCGTCGAAGC 194
|||||||| |||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 121 GCCTTCAATCCTAAACCTCTACACCTCCCAGCTACTTACCGGAGCATCAACCGTCGAAGC 180
Query 195 TGTAAACTCCTCTCCTTCCGTTGCTCATCCTCTTCCTTCTCCGAGAAACACCACAACAAC 254
|||||||||||||||||||| ||||| ||||| |||||||||||||| || | | |||||
Sbjct 181 TGTAAACTCCTCTCCTTCCGATGCTCTTCCTCCTCCTTCTCCGAGAAGCA-C-C-ACAAC 237
Query 255 GCGAATCCACCCAAATCAGATGACTTAGTCGAGCTTCCTCTATTTCCACTACCTCTCGTT 314
|||||||| || |||||||||||| |||||||||||||||| || |||||||||||||||
Sbjct 238 GCGAATCCGCCGAAATCAGATGACCTAGTCGAGCTTCCTCTCTTCCCACTACCTCTCGTT 297
Query 315 CTCTTCCCAGGCGCAACAATCCCGCTTCAGATCTTCGAGTTTCGTTACCGAGTCATGATG 374
|||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 298 CTCTTCCCCGGCGCTACAATCCCGCTTCAGATCTTCGAGTTCCGTTACCGAGTCATGATG 357
Query 375 CAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTTGTCTACTCCGACGCTGTTTCAGGC 434
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 358 CAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTAGTCTACTCCGACGCCGTTTCAGGC 417
Query 435 TCCGCAGCTGGAATCGGATGCGTCGGAGAAATCGTGAAACACGAGCGTCTAGTCGACGAT 494
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 418 TCCGCAGCTGGAATCGGATGCGTCGGAGAAATCGTGAAGCACGAGCGTCTCGTCGACGAT 477
Query 495 CGATTCTTCTTAATCTGTAAAGGTCAGGAACGATTCCGAGTCACCGATCTCGTCCGTACG 554
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 478 CGATTCTTCTTAATCTGTAAAGGTCAGGAACGATTCCGAGTCACGGATCTAGTCCGTACG 537
Query 555 AAACCTTACCTCGTCGCGAAAGTGACGTGGCTTGAAGATCGACCGTCCGGTGAAGAGAAT 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 AAACCTTACCTCGTCGCGAAAGTGACGTGGCTTGAAGATCGACCGTCCGGTGAAGAGAAT 597
Query 615 CTGGACGAATTGGCGAATGAAGTTGAGGTTCTGATGAAAGAAGTGATTCGATTGTCGAAT 674
||||||||||| |||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 598 CTGGACGAATTAGCGAATGAGGTTGAGGTTTTGATGAAAGAAGTGATTCGATTGTCGAAT 657
Query 675 AGATTGAATGGGAAACCAGATAAGGAATCTCAGGATCTGAGGAAGAATCAGTTTCCGACT 734
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 658 AGATTGAATGGGAAACCAGATAAGGAATCTCAGGATCTGAGGAAGAATCAGTTCCCGACT 717
Query 735 CCGTTCTCGTTCTTCGTCGGAAGCACGTTTGAAGGAGCTCCGATGGAGCAGCAAGCGTTA 794
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 CCGTTTTCGTTCTTCGTCGGAAGCACGTTTGAAGGAGCTCCGATGGAGCAGCAAGCGTTG 777
Query 795 CTGGAGCTTGAAGATACGGCGGCTAGGTTAAAGAGAGAGAGGGAGACGCTGAGGAATACA 854
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 CTGGAGCTTGAAGACACGGCGGCTAGGTTAAAGAGAGAGAGGGAGACGCTGAGGAATACA 837
Query 855 CTCAATTATTTGACGGCAGCTTCTGCTGTGAAAGATGTGTTCCCATCGCAGCCATAGTTT 914
|||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 838 CTCAATTACTTGACCGCAGCTTCTGCAGTGAAAGATGTGTTCCCATCGCAGCCATAGTTA 897
Query 915 AATCGGTATTTAGATA-TTTCTTCTGGTCTC-CGTTTCGGTGTTTTCAGTTATTATTGGA 972
|||||||||||||| | |||||| |||||| | |||| | ||||||||||||| |||
Sbjct 898 AATCGGTATTTAGAAAATTTCTT--GGTCTCTC-TTTCAGCGTTTTCAGTTATT---GGA 951
Query 973 TACATTATATTTGATCAATGTGTAAAGTTTCAGAAACTTAGGTAATAGATAGTGGAGATG 1032
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 952 TACATTATATTTGATCAATGTGTAAAGTTTCAGAAACTTAGGTAATAGATGGTGGAGATG 1011
Query 1033 TGTTTCATAGGATCGTTT---G--G-ATTGATCAAGAAATGGGTTTTTACTTGATTGCCT 1086
| || ||||||||||||| | | ||||||||||||| |||||||||||||||||||
Sbjct 1012 T-TT-CATAGGATCGTTTATAGTTGGATTGATCAAGAAAAAGGTTTTTACTTGATTGCCT 1069
Query 1087 CTATGATAAAA 1097
|| ||||||||
Sbjct 1070 CTGTGATAAAA 1080
> Ahg888054 jgi|Araly1|888054|Al_scaffold_0007_40
Length=624
Score = 929 bits (503), Expect = 0.0
Identities = 583/622 (94%), Gaps = 4/622 (1%)
Strand=Plus/Plus
Query 167 TACTTACCGGAGCATCAACCGTCGAAGCTGTAAACTCCTCTCCTTCCGTTGCTCATCCTC 226
|||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 7 TACTTACCGGAGCATCAACCGTCGAAGCTGCAAACTCCTCTCCTTCCGATGTTCATCCTC 66
Query 227 TTCCTTCTCCGAGAAACACCACAACAACGCGAATCCACCCAAATCAGATGACTTAGTCGA 286
|||||||||||||| || | | ||||||||||||| | | |||| ||||| |||| ||
Sbjct 67 CTCCTTCTCCGAGAAGCA-C-C-ACAACGCGAATCC-GCGATATCAAATGACCTAGTAGA 122
Query 287 GCTTCCTCTATTTCCACTACCTCTCGTTCTCTTCCCAGGCGCAACAATCCCGCTTCAGAT 346
||||||||| || |||||| |||||||||||||||| ||||||||||| |||||||||||
Sbjct 123 GCTTCCTCTCTTCCCACTAACTCTCGTTCTCTTCCCCGGCGCAACAATTCCGCTTCAGAT 182
Query 347 CTTCGAGTTTCGTTACCGAGTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGG 406
||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 183 CTTCGAGTTCCGTTACCGAGTCATGATGCAGACGCTTGTCCAATCCGATCTCAGATTCGG 242
Query 407 CGTTGTCTACTCCGACGCTGTTTCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAAT 466
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||
Sbjct 243 CGTTGTCTACTCCGACGCCGTTTCAGGTTCCGCAGCTGGAATCGGTTGCGTCGGAGAAAT 302
Query 467 CGTGAAACACGAGCGTCTAGTCGACGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACG 526
|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 303 CGTGAAGCACGAGCGTCTCGTCGATGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACG 362
Query 527 ATTCCGAGTCACCGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCT 586
||| || ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 363 ATTTCGCGTCACAGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAGGTGACGTGGCT 422
Query 587 TGAAGATCGACCGTCCGGTGAAGAGAATCTGGACGAATTGGCGAATGAAGTTGAGGTTCT 646
|||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |
Sbjct 423 TGAAGATCGACCGTCCGGGGAAGAGAATCTGGACGAATTGGCGAACGAGGTTGAGGTTTT 482
Query 647 GATGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCA 706
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 GATGATAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCA 542
Query 707 GGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGCACGTTTGA 766
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 543 GGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCGTCGGAAGCACGTTTGA 602
Query 767 AGGAGCTCCGATGGAGCAGCAA 788
||||||||||||||||||||||
Sbjct 603 AGGAGCTCCGATGGAGCAGCAA 624
> Ahg905790 jgi|Araly1|905790|Al_scaffold_0003_2918
Length=549
Score = 826 bits (447), Expect = 0.0
Identities = 513/545 (94%), Gaps = 4/545 (1%)
Strand=Plus/Plus
Query 246 CACAACAACGCGAATCCACCCAAATCAGATGACTTAGTCGAGCTTCCTCTATTTCCACTA 305
||| ||||||||||||| ||||||||||||||| |||| ||||||||||| || ||||||
Sbjct 7 CACCACAACGCGAATCCGCCCAAATCAGATGACCTAGTAGAGCTTCCTCTCTTCCCACTA 66
Query 306 CCTCTCGTTCTCTTCCCAGGCGCAACAATCCCGCTTCAGATCTTCGAGTTTCGTTACCGA 365
||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||
Sbjct 67 CCTCTCGTTCTCTTCCCCGGCGCAACAATCCCGCTTCAGATTTTTGAGTTCCGTTACCGA 126
Query 366 GTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTTGTCTACTCCGACGCT 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTTGTCTACTCCGACGCT 186
Query 426 GTTTCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAATCGTGAAACACGAGCGTCTA 485
|||||||| || | |||||||||||| | |||||||||||||||||| |||||||||||
Sbjct 187 GTTTCAGGTTCTGTAGCTGGAATCGGTTACGTCGGAGAAATCGTGAAGCACGAGCGTCTC 246
Query 486 GTCGACGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGATTCCG-AGTCACCGATCT 544
||||| |||||||||||||||||||||||||||||||||| ||| || | |||| |||||
Sbjct 247 GTCGATGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACAATTTCGCA-TCACGGATCT 305
Query 545 CGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTTGAAGATCGACCGTCCGG 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 306 CGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTTGAAGATCGACCGTCCGG 365
Query 605 TGAAGAGAATCTGGACGAATTGGCGAATGAAGTTGAGG-TTCTGATGAAAGAAGTGATTC 663
||||||||||||||||||||||||||| || ||||||| || ||||||||||||||||||
Sbjct 366 TGAAGAGAATCTGGACGAATTGGCGAACGAGGTTGAGGCTT-TGATGAAAGAAGTGATTC 424
Query 664 GATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGGATCTGAGGAAGAATC 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 425 GATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGGATCTGAGGAAGAATC 484
Query 724 AGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGCACGTTTGAAGGAGCTCCGATGGAGC 783
|||||||||||||||||||||| || || || |||||||||||||||||||| |||||||
Sbjct 485 AGTTTCCGACTCCGTTCTCGTTTTTTGTTGGTAGCACGTTTGAAGGAGCTCCAATGGAGC 544
Query 784 AGCAA 788
|||||
Sbjct 545 AGCAA 549
> Ahg936587 jgi|Araly1|936587|scaffold_500778.1
Length=518
Score = 717 bits (388), Expect = 0.0
Identities = 442/469 (94%), Gaps = 0/469 (0%)
Strand=Plus/Plus
Query 349 TCGAGTTTCGTTACCGAGTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCG 408
||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TCGAGTTCCGTTACTGAGTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGACG 60
Query 409 TTGTCTACTCCGACGCTGTTTCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAATCG 468
|||||||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||
Sbjct 61 TTGTCTACTCCGACGCCGTTTCAGGTTTCGCAGCTGGAATCGGCTGCGTCGGAGAAATCG 120
Query 469 TGAAACACGAGCGTCTAGTCGACGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGAT 528
|||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TGAAGCACGAGCGTCTCGTCGATGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGAT 180
Query 529 TCCGAGTCACCGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTTG 588
| || ||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 181 TTCGCGTCACGGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAGGTGACGGGGCTTG 240
Query 589 AAGATCGACCGTCCGGTGAAGAGAATCTGGACGAATTGGCGAATGAAGTTGAGGTTCTGA 648
||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 241 AAGATCGACCGTCCGGTGAAGAGAATCTGGACGAATTGGCGAACGAGGTTGAGGTTTTGA 300
Query 649 TGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGG 708
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGAAAGAAGTGGTTCAATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGG 360
Query 709 ATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGCACGTTTGAAG 768
||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 361 ATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCATTGGTAGCACGTTTGAAG 420
Query 769 GAGCTCCGATGGAGCAGCAAGCGTTACTGGAGCTTGAAGATACGGCGGC 817
||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 421 GAGCTCCAATGGAGCAGCAAGCGTTGCTGGAGCTTGAAGACACGGCGGC 469
> Ahg927517 jgi|Araly1|927517|scaffold_203078.1
Length=518
Score = 717 bits (388), Expect = 0.0
Identities = 443/470 (94%), Gaps = 2/470 (0%)
Strand=Plus/Plus
Query 349 TCGAGTTTCGTTACCGAGTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCG 408
||||| | ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1 TCGAGGTCCGTTACCGAGTCATGATGCAAACGCTTGTTCAATCCGATCTCAGATTCGGCG 60
Query 409 TTGTCTACTCCGACGCTGTTTCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAATCG 468
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 61 TTGTCTACTCCGACGCCGTTTCAGGTTCCGCAGCTGGAATCGGTTGCGTCGGAGAAATCG 120
Query 469 TGAAACACGAGCGTCTAGTCGACGATCGATTCTTCTTAATCTGTAAAGGTCA-GGAACGA 527
|||| ||||||||||| ||||| ||||||||||||||||||||||||||| | |||||||
Sbjct 121 TGAAGCACGAGCGTCTCGTCGATGATCGATTCTTCTTAATCTGTAAAGGT-ATGGAACGA 179
Query 528 TTCCGAGTCACCGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTT 587
|| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 TTTCGCGTCACAGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAGGTGACGTGGCTT 239
Query 588 GAAGATCGACCGTCCGGTGAAGAGAATCTGGACGAATTGGCGAATGAAGTTGAGGTTCTG 647
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| ||
Sbjct 240 GAAGATCGACCGTCCGGGGAAGAGAATCTGGACGAATTGGCGAACGAGGTTGAGGTTTTG 299
Query 648 ATGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAG 707
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATGATAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAG 359
Query 708 GATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGCACGTTTGAA 767
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 360 GATCTGAGGAAGAATCAGTTTCCGACTCTGTTCTCGTTTTTCGTCGGAAGCACGTTTGAA 419
Query 768 GGAGCTCCGATGGAGCAGCAAGCGTTACTGGAGCTTGAAGATACGGCGGC 817
||||||||||||||||||||||| || |||||||||||||| ||| ||||
Sbjct 420 GGAGCTCCGATGGAGCAGCAAGCATTGCTGGAGCTTGAAGACACGACGGC 469
> Ahg949441 jgi|Araly1|949441|scaffold_801328.1
Length=518
Score = 712 bits (385), Expect = 0.0
Identities = 441/469 (94%), Gaps = 0/469 (0%)
Strand=Plus/Plus
Query 349 TCGAGTTTCGTTACCGAGTCATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCG 408
||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 TCGAGTTCCGTTACTGAGTCATGATGCAAACGCTTCTCCAATTCGATCTCAGATTCGGCG 60
Query 409 TTGTCTACTCCGACGCTGTTTCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAATCG 468
|||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 61 TTGTCTACTCCGACGCCGTTTCAGGTTCCGCAGCTGGAATCGGTTGCGTCGGAGAAATCG 120
Query 469 TGAAACACGAGCGTCTAGTCGACGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGAT 528
|||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 121 TGAAGCACGAGCGTCTCGTCGATGATCGATTCTTCTTAATCTGTAAAGGTCATGAACGAT 180
Query 529 TCCGAGTCACCGATCTCGTCCGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTTG 588
| || ||||| |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 181 TTCGCGTCACGGATCTCGTCCATACGAAACCTTACCTCGTCGCGAAGGTGACGTGGCTTG 240
Query 589 AAGATCGACCGTCCGGTGAAGAGAATCTGGACGAATTGGCGAATGAAGTTGAGGTTCTGA 648
||||||||||||| ||||||||||||||||||||||||||||| || ||||||||| |||
Sbjct 241 AAGATCGACCGTCTGGTGAAGAGAATCTGGACGAATTGGCGAACGAGGTTGAGGTTTTGA 300
Query 649 TGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGG 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TGAAAGAAGTGATTCGATTGTCGAATAGATTGAATGGGAAACCAGATAAGGAATCTCAGG 360
Query 709 ATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGCACGTTTGAAG 768
||||||||||||||||||||||||||||||||||||| ||| | || |||||||||||||
Sbjct 361 ATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCATTGGTAGCACGTTTGAAG 420
Query 769 GAGCTCCGATGGAGCAGCAAGCGTTACTGGAGCTTGAAGATACGGCGGC 817
||||||| ||||||||||||||||| ||||||||||||| || |||||
Sbjct 421 GAGCTCCAATGGAGCAGCAAGCGTTGTTGGAGCTTGAAGACACAGCGGC 469
> Ahg327886 jgi|Araly1|327886|fgenesh1_pm.C_scaffold_7000113
Length=435
Score = 446 bits (241), Expect = 2e-124
Identities = 273/289 (94%), Gaps = 0/289 (0%)
Strand=Plus/Plus
Query 369 ATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTTGTCTACTCCGACGCTGTT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1 ATGATGCAAACGCTTCTCCAATCCGATCTCAGATTCGGCGTTGTCTACTCCGATGCCGTT 60
Query 429 TCAGGCTCCGCAGCTGGAATCGGATGCGTCGGAGAAATCGTGAAACACGAGCGTCTAGTC 488
||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 61 TCAGGTTCCGCAGCTAGAATCGGTTGCGTCGGAGAAATCGTGAAGCACGAGCGTCTCGTC 120
Query 489 GACGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGATTCCGAGTCACCGATCTCGTC 548
|| |||||||||||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 121 GATGATCGATTCTTCTTAATCTGTAAAGGTCAGGAACGATTTCGCGTCACGGATCTCGTC 180
Query 549 CGTACGAAACCTTACCTCGTCGCGAAAGTGACGTGGCTTGAAGATCGACCGTCCGGTGAA 608
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 CGTACGAAACCTTACCTCGTCGCGAAGGTGACGTGGCTTGAAGATCGACCGTCCGGTGAA 240
Query 609 GAGAATCTGGACGAATTGGCGAATGAAGTTGAGGTTCTGATGAAAGAAG 657
||||||||||||||||||||||| || ||||| ||| ||||||||||||
Sbjct 241 GAGAATCTGGACGAATTGGCGAACGAGGTTGAAGTTTTGATGAAAGAAG 289
Score = 187 bits (101), Expect = 1e-46
Identities = 113/119 (95%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 699 GAATCTCAGGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTCTTCGTCGGAAGC 758
||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 289 GAATCTCAGGATCTGAGGAAGAATCAGTTTCCGACTCCGTTCTCGTTTTTCGTTGGTAGC 348
Query 759 ACGTTTGAAGGAGCTCCGATGGAGCAGCAAGCGTTACTGGAGCTTGAAGATACGGCGGC 817
||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||
Sbjct 349 ACGTTTGAAGGAGCTCCAATGGAGCAGCAAGCGTTGCTGGAGCTTGAAGACACGGCGGC 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42430806621
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5