BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19780.1
Length=2262
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335228 jgi|Araly1|335228|fgenesh1_pg.C_scaffold_1001793 3681 0.0
Ahg911407 jgi|Araly1|911407|Al_scaffold_0001_1661 2085 0.0
Ahg895426 jgi|Araly1|895426|Al_scaffold_0006_3422 595 4e-169
> Ahg335228 jgi|Araly1|335228|fgenesh1_pg.C_scaffold_1001793
Length=2259
Score = 3681 bits (1993), Expect = 0.0
Identities = 2170/2257 (96%), Gaps = 5/2257 (0%)
Strand=Plus/Plus
Query 1 ATGTACAAATCTCAATATATAAGTGGCCATAGAGAAAAATTCGTAAGATTAGATGATACA 60
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTACAAATCTCAATATATAGGTGGCCAGAGAGAAAAATTCGTAAGATTAGATGATACA 60
Query 61 GATTCGAGGGTTTCAATGTCATCTAATGCTACGGGAATGAAGAAGCGATCATGTTTTGGA 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GATTCGAGGGTATCAATGTCATCTAATGCTACGGGAATGAAGAAGCGATCATGTTTTGGA 120
Query 121 TTGTTTAACGTAACTAGTCGTGGAGGAGGAAAGACAAAGAACACATCAAAATCATTTCGA 180
||||||||| ||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 121 TTGTTTAACCTAACTAGTCGTGGAGGAGGGAAGACAAAGAACACATCGAAATCCTTTCGA 180
Query 181 GAAGGTGTTAAAATCGGATCAGAGGGTCTAAAAACGATCGGAAAATCATTCACATCAGGT 240
||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 181 GAAGGCGTTAAAATCGGATCAGAGGGTCTAAAAACGATAGGAAAATCATTGACATCAGGT 240
Query 241 GTAACAAGAGCTGTTTTCCCTGAAGATCTAAGAGTCTCCGAGAAGAAAATCTTTGATCCT 300
|| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 241 GTGACAAGAGCTGTTTTCCCTGAAGATCTAAGAGTATCTGAGAAGAAAATCTTTGATCCT 300
Query 301 CAAGACAAAACACTTTTATTATGGAACAGAATGTTTGTTATCTCTTGCATTCTTGCTGTC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CAAGACAAAACACTTTTATTATGGAACAGAATGTTTGTTATCTCTTGCATTCTTGCGGTC 360
Query 361 TCTGTTGATCCTCTGTTCTTCTATCTCCCTATTGTCGATAACTCAAAGAACTGCATTGGG 420
||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 361 TCTGTTGATCCTCTGTTTTTCTATCTACCGATTGTCGATAACTCAAAGAACTGCATTGGA 420
Query 421 ATTGACTCTAAATTAGCTGTGACAACTACTACTCTAAGAACGATCATCGATGTTTTTTAT 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATCGACTCTAAATTAGCTGTGACAACTACTACTCTAAGAACGATCATCGATGTTTTTTAT 480
Query 481 CTTACACGAATGGCTCTTCAGTTCCGTACCGCTTACATTGCTCCTTCTTCTCGTGTGTTT 540
||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 481 CTTACGCGAATGGCTCTTCAGTTTCGTACAGCTTATATTGCTCCTTCTTCTCGTGTGTTT 540
Query 541 GGAAGAGGTGAGCTTGTGATCGACCCTGCAAAGATCGCTGAACGGTATTTGACTCGTTAT 600
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 541 GGAAGAGGTGAGCTTGTGATCGACCCTGCAAAGATTGCTGAACGGTATTTGACTCGCTAT 600
Query 601 TTCATTGTCGATTTCCTCGCGGTTCTTCCTTTACCTCAGATTGCTGTGTGGAAGTTTCTT 660
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 601 TTCATTGTCGATTTCCTCGCGGTTCTTCCCTTACCTCAGATTGCGGTGTGGAAGTTTCTT 660
Query 661 CACGGATCTAAAGGAACAGATGTATTACCAACAAAACAGGCGCTATTACACATTGTCATC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CACGGATCTAAAGGAACAGATGTATTACCAACAAAACAGGCGCTATTACACATTGTCATC 720
Query 721 ACACAGTACATACCAAGATTCGTTAGGTTTATTCCATTAACTTCAGAGCTCAAGAAAACA 780
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 721 ACACAGTACATACCAAGATTCGTTAGGTTTATTCCATTAACATCGGAGCTCAAGAAAACA 780
Query 781 GCAGGAGCTTTCGCTGAAGGTGCTTGGGCTGGTGCTGCTTATTACCTCCTCTGGTATATG 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCAGGAGCTTTCGCTGAAGGTGCTTGGGCTGGTGCTGCTTATTACCTCCTCTGGTATATG 840
Query 841 CTTGCAAGTCACATAACTGGAGCGTTCTGGTACATGTTGTCAGTGGAACGTAACGATACA 900
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 CTTGCAAGCCACATTACTGGAGCGTTCTGGTACATGTTGTCAGTGGAACGTAACGATACA 900
Query 901 TGCTTGAGATCCGCTTGTAAAGTCCAGCCTGATCCCAAGGTCTGTGTTCAGATTCTTTAT 960
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 901 TGCTTGAGATCCGCTTGTAAAGTCCAGCCTGATCCCAAGGTTTGTGTTCAGATTCTGTAT 960
Query 961 TGTGGCAGCAAATTAATGAGCAGTCGCGAAACCGACTGGATCAAATCAGTCCCTGATCTT 1020
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 TGTGGCAGCAAATTAATGAGCAGTCGCGACACCGACTGGATCAAATCAGTCCCTGATCTT 1020
Query 1021 TTTAAGAACAATTGTTCTGCTAAAAGCGATGAGTCTAAATTCAACTACGGGATCTATAGC 1080
|| ||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct 1021 TTCAAGAACAATTGTTCTGCGAAAAGCGATGAGTCCAAATTCAATTACGGAATCTATAGC 1080
Query 1081 CAGGCTGTGTCTTCCGGTATTGTATCTTCGACAACGTTTTTCTCCAAGTTTTGTTATTGT 1140
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CAGGCTGTGTCTTCTGGAATTGTATCTTCGACAACGTTTTTCTCCAAGTTTTGTTATTGT 1140
Query 1141 CTATGGTGGGGTCTCCAAAATCTCAGCACGTTAGGTCAAGGGCTGCAAACAAGTACATAT 1200
|| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1141 CTTTGGTGGGGTCTCCAAAATCTCAGTACGTTAGGTCAAGGGCTGCAAACAAGTACCTAT 1200
Query 1201 CCAGGAGAAGTTTTGTTTTCAATTGCAATTGCTGTAGCTGGACTTCTTTTGTTTGCTCTT 1260
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1201 CCAGGAGAAGTTTTGTTTTCAATTGCAATTGCTGTAGCCGGACTTCTCTTGTTTGCTCTT 1260
Query 1261 CTCATTGGGAATATGCAAACTTATCTTCAGTCACTTACGGTTCGCTTAGAGGAAATGAGG 1320
||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1261 CTCATCGGGAATATGCAAACTTATCTGCAGTCACTTACGGTTCGTTTAGAGGAAATGAGG 1320
Query 1321 ATTAAAAGACGTGATTCCGAACAGTGGATGCATCACAGGTCACTTCCACAAAACCTGAGG 1380
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 ATTAAAAGACGCGATTCCGAACAGTGGATGCATCACAGGTCACTTCCACAAAACCTGAGG 1380
Query 1381 GAACGAGTCAGACGTTATGATCAATACAAATGGTTGGAAACAAGAGGAGTCGACGAAGAA 1440
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1381 GAACGAGTCAGACGTTATGATCAATACAAATGGTTAGAAACAAGAGGAGTCGACGAAGAA 1440
Query 1441 AACATAGTCCAGAGTTTACCAAAAGATCTTAGAAGAGACATCAAACGCCATCTCTGTCTA 1500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 AACATAGTCCAGAGTTTACCAAAAGATCTTAGAAGAGACATCAAACGCCATCTCTGTCTG 1500
Query 1501 AATTTAGTTCGCAGGGTTCCTCTGTTTGCTAATATGGATGAGAGATTACTAGACGCAATA 1560
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1501 AACTTAGTTCGCAGGGTTCCTCTGTTTGCTAATATGGATGAGAGACTACTAGACGCAATA 1560
Query 1561 TGTGAGAGACTAAAGCCAAGTCTATACACAGAGAGCACTTACATAGTGCGAGAAGGAGAC 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TGTGAGAGACTAAAGCCAAGTCTATACACAGAGAGCACTTACATAGTGCGAGAAGGAGAC 1620
Query 1621 CCGGTTAACGAAATGCTCTTCATAATCCGAGGCCGGTTAGAGAGTGTAACAACAGATGGT 1680
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1621 CCGGTTAACGAAATGCTGTTCATAATCCGAGGCCGGTTAGAGAGTGTAACGACAGATGGT 1680
Query 1681 GGAAGAAGCGGTTTCTTTAACAGAGGTTTATTGAAAGAAGGTGACTTTTGTGGTGAAGAG 1740
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1681 GGAAGAAGTGGTTTCTTTAACAGAGGTTTATTGAAAGAAGGCGACTTTTGTGGTGAAGAG 1740
Query 1741 CTTCTGACTTGGGCACTTGACCCTAAAGCAGGCTCAAACTTACCTTCTTCCACACGAACA 1800
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 1741 CTTCTGACTTGGGCACTTGACCCTAAAGCAGGCTCAAACTTGCCTTCTTCCACAAGAACA 1800
Query 1801 GTGAAGGCTCTAACTGAAGTAGAGGCTTTCGCTTTAGAAGCGGAAGAGCTCAAGTTTGTG 1860
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1801 GTGAAGGCTCTAACTGAAGTAGAGGCTTTCGCTTTAGAAGCTGAAGAGCTCAAATTTGTG 1860
Query 1861 GCTAGTCAGTTCAGGCGTCTTCACAGTCGTCAGGTTCAACAAACTTTCAGGTTTTACTCT 1920
|||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||
Sbjct 1861 GCTAGTCAGTTCAGGCGTCTTCACAGTCGTCAAGTCCAACAAACGTTCAGGTTTTACTCT 1920
Query 1921 CAACAATGGAGGACTTGGGCTGCTTGTTTCATCCAAGCCGCTTGGCGTAGACATTTAAGA 1980
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1921 CAACAATGGAGGACTTGGGCTGCTTGTTTTATCCAAGCCGCTTGGCGTAGACACTTAAGA 1980
Query 1981 AGGAAAATCGCAGAGCTTAGACGTAaagaagaagaagaagaagaaATGGATTATGAAGAT 2040
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 1981 AGGAAAATCGCAGAGCTTAGACGTAAAGAAGAAGAAGAAGAA-A--TGGATTATGAAGAT 2037
Query 2041 GATGAATATTATGATGATAATATGGGTGGTATGGTTACAAGGAGTGATAGTTCTGTTGGA 2100
||| | | ||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 2038 GATTACGAGTATGATGATAATATGGGTGGTGTGGTTACAAGGAGTGATAGTTCTGCTGGA 2097
Query 2101 TCAAGTTCTACATTACGTTCCACGGTATTTGCATCAAGATTTGCTGCTAACGCGCTTAAG 2160
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2098 TCAAGTTCTAGATTACGTTCCACGGTATTTGCATCAAGATTTGCTGCTAACGCGCTTAAG 2157
Query 2161 GGTCATAAACTAAGGGTCACCGAGAGTTCAAAGAGTTTAATGAATTTAACAAAGCCATCA 2220
|||||||| ||||||||| ||||||||||||||||||| ||||| ||| ||||||||||
Sbjct 2158 GGTCATAAGCTAAGGGTCTCCGAGAGTTCAAAGAGTTTGGTGAATCTAAGAAAGCCATCA 2217
Query 2221 GAACCTGACTTT-GAGGCTCTTGATACAGATGACTTG 2256
|||||||| ||| ||||||||||||||||| || |||
Sbjct 2218 GAACCTGA-TTTCGAGGCTCTTGATACAGAGGATTTG 2253
> Ahg911407 jgi|Araly1|911407|Al_scaffold_0001_1661
Length=2217
Score = 2085 bits (1129), Expect = 0.0
Identities = 1915/2280 (84%), Gaps = 111/2280 (5%)
Strand=Plus/Plus
Query 1 ATGTACAAATCTCAATATATAAGTGGCCATAGAGAAAAATTCGTAAGATTAGATGATACA 60
||||||||||| ||||| || || ||||| |||||||||||||| || |||||||||| |
Sbjct 1 ATGTACAAATCCCAATACATTAGCGGCCAGAGAGAAAAATTCGTTAGGTTAGATGATATA 60
Query 61 GATTCGAGGGTTTCAATGTCATCTAATGCTACGGGAATGA--A-GAAGCG-ATCATGTTT 116
||||| | | ||| | || || ||| || ||||||| | | |||| | | |||||
Sbjct 61 GATTC-A-AG-TTC--T-TC-TC--CTGCGACTGGAATGATGATGCAGCGAAAC-TGTTT 110
Query 117 TGGATTGTTTAACGTAACTAGTCGTGGAGGAGGAAAGACAAAGAACA-CATCAAAATCAT 175
||| |||||| ||| | || ||||| |||| | ||||| | |||| ||||| |
Sbjct 111 CGGA---TTTAACCTAAAGAACCGAGGAGG-TGAAA-A-GAAGAA-AGCATCCAAATC-T 162
Query 176 TTC-GAGAAGGTGT---TAAAATCGGATCAGAGGGTCTAAAAACGATCGGAAAATCATTC 231
||| | ||||| || |||||| ||||||| ||||||| ||| ||||| | |
Sbjct 163 TTCAGGGAAGGAGTCAAAAAAATCAGATCAGAAGGTCTAATAACCATCGG----T-A--- 214
Query 232 ACATCAGGTGTAACAAGAGCTGTTTTCCCTGAAGATCTAAGAGTCTCCGAGAAGAAAATC 291
| ||| | ||||||||||| ||||| || |||||| ||||| | ||||||||||||||
Sbjct 215 A-ATC--G-GTAACAAGAGCAGTTTTTCCAGAAGATTTAAGAATAACCGAGAAGAAAATC 270
Query 292 TTTGATCCTCAAGACAAAACACTT-TTATTATGGAACAGAATGTTTGTTATCTCTTGCAT 350
|||||||||||||||||||||||| | | ||||||||||| |||| || || || || ||
Sbjct 271 TTTGATCCTCAAGACAAAACACTTCTCA-TATGGAACAGATTGTTCGTCATTTCGTGTAT 329
Query 351 TCTT-GCTGTCTCTGTTGATCC-TCTGTTCTTCTATC-TCCCTATTGTCGATAACT-C-A 405
| || |||||||| |||||||| | |||||||||||| |||| ||||||||||| | |
Sbjct 330 T-TTAGCTGTCTCAGTTGATCCAT-TGTTCTTCTATCTTCCC-ATTGTCGATAATTCCGG 386
Query 406 AAG-AACTGCATTGGGATTGACTCTAAATTAGCTGTGACAACTACTACTCTAAGAACGAT 464
||| | ||| || ||||||||| | ||| ||||||| ||||| || || || ||||| ||
Sbjct 387 AAGCAGCTGTATAGGGATTGACACGAAACTAGCTGTTACAACGACGACCCTTAGAACCAT 446
Query 465 CATCGATGTTTTTTATCTT-AC-ACGAATGGCTCTTCAGTTCCGTACCGCTTACATTGCT 522
| | ||||| ||||| ||| || | ||||||||||||||||||| || ||||| || |||
Sbjct 447 CGTTGATGTCTTTTA-CTTAACTA-GAATGGCTCTTCAGTTCCGAACAGCTTATATAGCT 504
Query 523 CCTTCTTCTCGTGTGTTTGGAAGAGGTGAGCTTGTGATCGACCCTGCAAAGATCGCTGAA 582
||||| |||||||||||||| | |||||||||||||| || |||||||||||||| |||
Sbjct 505 CCTTCCTCTCGTGTGTTTGGTCGTGGTGAGCTTGTGATTGATCCTGCAAAGATCGCGGAA 564
Query 583 CGGTATTTGACTCGTTATTTCATTGTCGATTTCCTCGCGGTTCTTCCTTTACCTCAGATT 642
|||||||| || ||||||||||| ||||||||||| || || ||||||||||| ||||||
Sbjct 565 CGGTATTTAACCCGTTATTTCATCGTCGATTTCCTAGCAGTGCTTCCTTTACCGCAGATT 624
Query 643 GCTGTGTGGAAGTTTCTTCACGGATCTAAAGGAACAGATGTATTACCAAC-AAAACAGGC 701
|| || ||||||||||||||||| ||||||||| ||||||| |||| || ||||| |||
Sbjct 625 GCGGTATGGAAGTTTCTTCACGGGTCTAAAGGATCAGATGTGCTACCGACGAAAAC-GGC 683
Query 702 GCTATTACACATTGTCATCACACAGTACATACCAAGATTCGTTAGGTTTATTCCATTAAC 761
| || ||||||| ||| ||||| || || |||||| | ||||||||||| |||||
Sbjct 684 ATTGTTGTACATTGTAATCGTGCAGTATATTCCGAGATTCATGAGGTTTATTCCGTTAAC 743
Query 762 TTCAGAGCTCAAGAAAACAGCAGGAGCTTTCGCTGAAGGTGCTTGGGCTGGTGCTGCTTA 821
||||| || |||||||| || |||||||| |||||||| || |||||||||||||||||
Sbjct 744 ATCAGAACTGAAGAAAACTGCTGGAGCTTTTGCTGAAGGAGCGTGGGCTGGTGCTGCTTA 803
Query 822 TTACCTCCTCTGGTATATGCTTGCAAGTCACATAACTGGAGCGTTCTGGTACATGTTGTC 881
||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 804 TTATCTCCTCTGGTATATGCTTGCAAGCCACATAACTGGAGCGTTTTGGTACATGTTGTC 863
Query 882 AGTGGAACGTAACGATACATGCTT-GAGATCCGCTTGTAAAGTCCAGCCTGATCC-CAAG 939
|||||||||||||||||| || || ||||| |||||||| |||||||| ||||| | |
Sbjct 864 AGTGGAACGTAACGATACTTG-TTGGAGATTTGCTTGTAAGGTCCAGCCAGATCCGCGA- 921
Query 940 GTCTGTGTTCAGATTCTT-TATTGTGGCAGCAAATTAATGAGCAGTCGCGAAACCGACTG 998
|||||||||||||| || |||||||| || ||||| |||||| ||||||||| || ||
Sbjct 922 CTCTGTGTTCAGATT-TTGTATTGTGGGAGTAAATTTGTGAGCAATCGCGAAACTGAATG 980
Query 999 GATCAAATCAGTCCCTGATCTTTTTAAGAACAATTGTTCTGCTAAAAGC-GATGAGTCTA 1057
||||||| |||||||||| ||| | |||| ||||||||| ||| ||||| ||||| || |
Sbjct 981 GATCAAAACAGTCCCTGAGCTTCTCAAGAGCAATTGTTCCGCT-AAAGCAGATGATTC-A 1038
Query 1058 AA-TTCAACTACGGGATCTATAGCCAGGCTGTGTCTTCCGGTATTGTATCTTCGACAACG 1116
|| || ||||| ||||| ||| | ||||| | ||||| || |||||||| || |||||
Sbjct 1039 AAGTTTAACTATGGGATATATGGTCAGGCAATATCTTCAGGCATTGTATCATCAACAACA 1098
Query 1117 TTTTTCTCCAAGTTTTGTTATTGTCTATGGTGGGGTCTCCAAAATCTCAGCACGTTAGGT 1176
||||||||||| || ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1099 TTTTTCTCCAAATTCTGTTATTGTCTATGGTGGGGTCTTCAGAATCTCAGCACGTTAGGT 1158
Query 1177 CAAGGGCTGCAAACAAGTACATATCCAGGAGAAGTTTTGTTTTCAATTGCAATTGCTGTA 1236
||||| |||||||||||||||| ||||||||| ||||||||||| ||||| |||||| ||
Sbjct 1159 CAAGGACTGCAAACAAGTACATTTCCAGGAGAGGTTTTGTTTTCCATTGCGATTGCTATA 1218
Query 1237 GCTGGACTTCTT-TTGTTTGCTCTTCTCATTGGGAATATGCAAACTTATCTTCAGTCACT 1295
||||| |||||| || || || ||||| |||||||||||||| |||||||||||||||||
Sbjct 1219 GCTGGTCTTCTTCTT-TTCGCGCTTCTTATTGGGAATATGCAGACTTATCTTCAGTCACT 1277
Query 1296 TACGGTTCGCT-TAGAGGAAATGAGGATTAAAAGACGTGATTCCGAACAGTGGATGCATC 1354
||| ||||| | | ||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 1278 TACTGTTCG-TCTCGAGGAAATGAGGATTAAAAGACGCGACTCGGAACAGTGGATGCATC 1336
Query 1355 ACAGGTCACTTCCACAAAACCTGAGGGAACGAGTCAGACGTTATGATCAATACAAATGGT 1414
||||||| ||||||||||| |||||||| |||||||||| |||||||||||||||||||
Sbjct 1337 ACAGGTCCCTTCCACAAAATTTGAGGGAAAGAGTCAGACGCTATGATCAATACAAATGGT 1396
Query 1415 TGGAAACAAGAGGAGTCGACGAAGAAAACATAGTCCAGAGTTTACCAAAAGATCTTAGAA 1474
| || |||||||| || ||||||||||||||||| ||||||||||| || ||||| || |
Sbjct 1397 TAGAGACAAGAGGTGTAGACGAAGAAAACATAGTTCAGAGTTTACCTAAGGATCTCAGGA 1456
Query 1475 GAGACATCAAACGCCATCTCTGTCTAAATTTAGTTCGCAGGGTTCCTCTGTTTGCTAATA 1534
||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||
Sbjct 1457 GAGACATCAAACGCCATCTCTGTCTCAATTTAGTTAGGAGGGTTCCTCTGTTTGCTAATA 1516
Query 1535 TGGATGAGAGATTACTAGACGCAATATGTGAGAGACTAAAGCCAAGTCTATACACAGAGA 1594
||||||| |||||||| ||||| || ||||||||| ||||||| ||||| ||||| || |
Sbjct 1517 TGGATGAAAGATTACTTGACGCGATCTGTGAGAGATTAAAGCCGAGTCTTTACACGGAAA 1576
Query 1595 GCACTTACATAGTGCGAGAAGGAGACCCGGTTAACGAAATGCTCTTCATAATCCGAGGCC 1654
|||||||||| ||||| |||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1577 GCACTTACATTGTGCGTGAAGGAGACCCGGTTAACGAAATGATGTTCATAATCCGAGGCC 1636
Query 1655 GGTTAGAGAGTGTAACAACAGATGGTGGAAGAAGCGGTTTCTTTAACAGAGGTTTATTGA 1714
||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||||
Sbjct 1637 GGTTAGAGAGTGTAACAACAGATGGAGGACGAAGCGGTTTCTTCAACAGAGGGTTATTGA 1696
Query 1715 AAGAAGGTGACTTTTGTGGTGAAGAGCTTCTGACTTGGGCACTTGACCCTAAAGCAGGCT 1774
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1697 AAGAAGGAGACTTTTGTGGTGAAGAGCTTCTGACATGGGCACTTGACCCTAAAGCAGGCT 1756
Query 1775 CAAACTTACCTTCTTCCACACGAACAGTGAAGGCTCTAACTGAAGTAGAGGCTTTCGCT- 1833
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1757 CAAACTTACCTTCTTCCACAAGAACAGTGAAGGCTCTAACTGAAGTAGAGGCTTTCGCTC 1816
Query 1834 TTAGAAGCGGAAGAGCTCAAGTTTGTGGCTAGTCAGTTCAGGCGTCTTCACAGTCGTCAG 1893
|| ||||| |||||||| |||||||| || |||||||| ||| | ||||| ||||| |||
Sbjct 1817 TT-GAAGCTGAAGAGCTGAAGTTTGTAGCAAGTCAGTTTAGGAGACTTCATAGTCGACAG 1875
Query 1894 GTTCAACAAAC-TTTCAGGTTTTACTCTCAACAATGGAGGACTTGGGCTGCTTGTTTCAT 1952
||||||||||| ||| |||||||||||||| |||||||| ||||||||| |||| |||||
Sbjct 1876 GTTCAACAAACATTT-AGGTTTTACTCTCAGCAATGGAGAACTTGGGCTTCTTGCTTCAT 1934
Query 1953 CCAAGCCGCTTGGCGTAGAC-ATTTAAGAAGGAAAATCGCAGAGCTTAGACGTAaagaag 2011
|||||| ||||||||| | | ||| ||||||||||| ||| || || || || | |||||
Sbjct 1935 CCAAGCTGCTTGGCGTCG-CTATTCAAGAAGGAAAAACGCTGAACTGAGGCGGATAGAAG 1993
Query 2012 aagaagaagaagaaATGGATTATGAAGATGATGAATATTATGATGATAA-T-ATGGGTGG 2069
|||||||||||||||||| ||||||| |||| | ||| |||| || || | | | ||
Sbjct 1994 AAGAAGAAGAAGAAATGGGTTATGAATATGA-G--TATGATGAAGA-AAGTGACAAGAGG 2049
Query 2070 --TATGGTTA-CA-AGGAG-TGATAGTTCTGTTGGATCAAGTTCTACATTACGTTCCACG 2124
|||||||| || | || ||| || || | | ||||| | | ||||| |||
Sbjct 2050 CCTATGGTTATCACAAGAACTGA--GT-CT-T-----C---TTCTAGACTGCGTTCAACG 2097
Query 2125 GTATTTGCATCAAGATTTGCTGCTAACGCGCTT-AA-GGGTCATAAACTAAGG-G-TCAC 2180
||||||||||||||||||||||||| || || || ||| || | ||||||| | |||
Sbjct 2098 ATATTTGCATCAAGATTTGCTGCTAATGCA-TTGAAAGGG-CACAGACTAAGGAGCTCA- 2154
Query 2181 CGAGAGTTCAAAGAGTTTAATGAATTTAACAAA-GCCATCAG-AACCTGACTTTGAGGCT 2238
|||||||||||||| || |||||| | |||| ||| || | ||||||| ||||| |||
Sbjct 2155 -GAGAGTTCAAAGAGCTTGATGAATCTG-CAAAAGCC-TCCGGAACCTGATTTTGATGCT 2211
> Ahg895426 jgi|Araly1|895426|Al_scaffold_0006_3422
Length=930
Score = 595 bits (322), Expect = 4e-169
Identities = 560/671 (83%), Gaps = 31/671 (5%)
Strand=Plus/Plus
Query 1142 TATGGTGGGGTCTCCAAAATCTCAGCACGTTAGGTCAAGGGCTGCAAACAAGTACATATC 1201
||| ||||| ||| |||||||||||| | |||| ||||||||||||||||||||||| ||
Sbjct 276 TATTGTGGGATCTTCAAAATCTCAGCGCCTTAGTTCAAGGGCTGCAAACAAGTACATTTC 335
Query 1202 CAGGAGAAGTTTTGTTTTCAATTGCAATT-GCTGTAGCTGGACTTCTTTTGTTTGCTCTT 1260
||||||| ||||||||||| | || || | | || || ||||| | || || |||
Sbjct 336 CAGGAGAGGTTTTGTTTTCCAGCGC-GTTAGGTCAAG--GG-TTTCTTCT-TTCGCGCTT 390
Query 1261 CTCA-TTGGGAATATGCAAAC--TT-ATCTTCAGTCACTTACGGTTCGCT-TAGAGGAAA 1315
|| | | |||||||||| || || |||||| | |||||| ||||| | | |||||||
Sbjct 391 CT-ACTCGGGAATATGCTTACTGTTCGTCTTCATTTACTTACTGTTCG-TCTCGAGGAAA 448
Query 1316 TGAGGATTAAAAGACGTGATTCCGAACAGTGGATGCATCACAGGTCACTTCCACAAAACC 1375
||||||| |||||| |||| || ||||| | | ||||||||||||||||||||||
Sbjct 449 TGAGGATCAAAAGATGTGACTCGGAACA---G-T--ATCACAGGTCACTTCCACAAAATT 502
Query 1376 TGAGGGAACGAGTCAGACGTTATGATCAATACAAATGGTTGGAAACAAGAGGAGTCGACG 1435
|||||||| |||||||||| |||||||||||||||||||| || || ||||| || | |
Sbjct 503 TGAGGGAAAGAGTCAGACGCTATGATCAATACAAATGGTTAGAGACCAGAGGTGTTAAGG 562
Query 1436 AAGAAAACATAGTCCAGAGTTTACCAAAAGATCTTAGAAGAGACATCAAACGCCATCTCT 1495
||||||| |||| ||||||||| | | ||||| ||||||||||||||||| ||||| |
Sbjct 563 AAGAAAATTTAGTTCAGAGTTTAGCTACGGATCTCAGAAGAGACATCAAACGTCATCTTT 622
Query 1496 GTCTAAATTTAGTTCGCAGGGTTCCTCTGTTTGCTAATATGGATGAGAGATTACTAGACG 1555
| || | ||||||| | |||||||||||||||||||||||| |||| |||||||| ||
Sbjct 623 GCCTGAGTTTAGTTAGGAGGGTTCCTCTGTTTGCTAATATGAATGAAAGATTACTCGA-- 680
Query 1556 CAATATGTGAGAGACTAAAGCCAAGTCTATACACA-GAGAGCACTTACATAGTGCGAGAA 1614
||| ||||||||| ||||||| ||||| |||| | || ||||||| ||| ||||| |||
Sbjct 681 CAA-CTGTGAGAGATTAAAGCCGAGTCTTTACA-AGGAAAGCACTTTCATTGTGCGTGAA 738
Query 1615 GGAGACCCGGTTAACGAAATGCTCTTCATAATCCGAGGCCGGTTAGAGAGTGTAACAAC- 1673
||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 739 GGAAACCCGGTTAATGAAATGATGTTCATAATCCGAGGCCGGTTAGAGAGTGTAACA-CT 797
Query 1674 AGATGGTGGAAGAAGCGGTTTCTTTAACAGAGG-TT--TATTGAAAGAAGGTGACTTTTG 1730
|||||| ||||||||| |||||||||||||||| || ||||||||||||| ||||||||
Sbjct 798 AGATGGAGGAAGAAGCTGTTTCTTTAACAGAGGGTTAATATTGAAAGAAGGAGACTTTTG 857
Query 1731 TGGTGA-AGAGCTTCTGACTTGGGCACTTGACCCTAAAGCAGGCTCAAACTTACCTTCTT 1789
|||||| | |||||||||| ||||| ||||||| |||||||||||||| |||||||||||
Sbjct 858 TGGTGATA-AGCTTCTGACATGGGCTCTTGACCTTAAAGCAGGCTCAATCTTACCTTCTT 916
Query 1790 CCACACGAACA 1800
||||| |||||
Sbjct 917 CCACAAGAACA 927
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85169787820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5