BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19790.1
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472205 jgi|Araly1|472205|fgenesh2_kg.1__2159__AT1G19790.1 2388 0.0
> Ahg472205 jgi|Araly1|472205|fgenesh2_kg.1__2159__AT1G19790.1
Length=1688
Score = 2388 bits (1293), Expect = 0.0
Identities = 1582/1711 (92%), Gaps = 61/1711 (4%)
Strand=Plus/Plus
Query 1 AACTGTAGAGAAAGTGCCCCATAGAAGAAGATCTTCATAGTActctccatctctttactc 60
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 AACTGTAGAGAAAGTGCCCCATAGAAGAAGATCTTCATAGTACTATCCATCTCTTTA--- 57
Query 61 tccttctctttctctctctctatctctctatttctctctctctctctctctcACCCACAG 120
| |||| || |||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 58 --C-TCTC---CT-TCTCTCTATCCCTCTATATCTCTCTCTCTCTCTCTCTCACCCACAT 110
Query 121 AGAAAACCAGCAGTAGTAGCAGTAAATTGCTTGAGTTCTTGATGACAGATCGACAATGTC 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 111 AGAAAACCAGCAGTAGTAGCAGTAAATTGCTTGAGTTCTTGATGACAGA--GACAATATC 168
Query 181 TTAAATGATGAAGAGAAAAGAAG-G-A-A--AGCAATAAACCTTGGCGGCGTTTGCAGCA 235
||||||||||||||||| ||||| | | | |||||||||||||||||||||||||||||
Sbjct 169 TTAAATGATGAAGAGAAGAGAAGAGAAGAGGAGCAATAAACCTTGGCGGCGTTTGCAGCA 228
Query 236 GTTTCTTAAATTTCCTCACCATCATTACTCTCTCATCTGCTCCCAAATCTGCTCCTTTTA 295
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 229 GTTTCTTAAATTTCCCCACCATCATTACTCTCTCATCTGCTCCCAAATCTGCTCCTTCTA 288
Query 296 AATACCAAACACATCTCCAAGCCTAGCTAGAAATTAATGTGATAGAGAG-Caaa-agaaa 353
||||||||||||||||||||| ||||||||||||||||| | ||||||| ||| |||||
Sbjct 289 AATACCAAACACATCTCCAAGTCTAGCTAGAAATTAATGAGCTAGAGAGTAAAACAGAAA 348
Query 354 aagaaaaaaaTGGCTGGATTGTTCTATCTAGGAGGGAGAGATCACAACAAACAAGATCAT 413
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 349 GAGAAAAAAATGGCTGGATTGTTCTATCTTGGAGGGAGAGATCACAACAAACAAGATCAT 408
Query 414 CATCAAGAAAAGGATCATAATGAAGACAAGAGCAACAATTATCTCTATCTATACAAAGAC 473
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 CATCAAGACAAGGATCATAATGAAGACAAGAGCAACAATTATCTCTATCTATACAAAGAC 468
Query 474 GAGATCTACAACAACAACAAGGGTTTTGAGATTTTCCCTCCTCAATATTTTCAACAACAA 533
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 469 GAGATCTACAACAACAACAAGGGTTTTGAGATTTTCCCACCTCAATATTTTCAACAACAA 528
Query 534 CAGCAACAAAATCATGCGGCTGCTCCAACAAATCTCTACTCTTTTGGTATGGTCCCGAGT 593
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 CAACAACAAAATCATGTGGCTGCTCCAACAAATCTCTACTCTTTTGGTATGGTCCCGAGT 588
Query 594 GGTGG---TAACATAAACAATAACCGGAGTACTAATCGGAGTTTGTACTTCAACGTCGTC 650
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 GGTGGTATTAACATTAACAATAACCGGAGTACTAATCGGAGTTTGTACTTCAACGTCGTC 648
Query 651 TCCGATCATGAGCCGGTGAGATCCTCAACGGGAGGGTTTACGGTAACGAGACAAGGGAAC 710
||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||
Sbjct 649 TCCGATCATGAGCCGGTGAGATCCTCAACGGGAGGGTTTACGGTAACTAGGCAAGGAAAC 708
Query 711 ATGAATTGCCAAGACTGTGGGAATCAAGCCAAGAAAGATTGTCCTCATATGAGATGTCGT 770
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 ATGAATTGCCAAGACTGTGGGAATCAAGCCAAGAAAGATTGTCCTCATATGAGATGTCGT 768
Query 771 ACTTGTTGTAAGAGCCGAGGGTTTGATTGCCAAACACACGTGAAGAGCACGTGGGTCTCG 830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 ACTTGTTGTAAGAGCCGAGGGTTTGATTGCCAAACACACGTGAAGAGCACGTGGGTCTCG 828
Query 831 GCTGCTAAACGCCGTGAGAGACAGGCTCAGTTAGCTGTTTTGCCAGCTAAGCGTATAAGA 890
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 829 GCTGCTAAACGCCGTGAGAGACAGGCTCAGTTAGCTGTTTTGCCAGCTAAGCGGATAAGA 888
Query 891 GACGCTAACTCAAGGGGTGGTGGGGATGACGATGATGATGACAAAGAGGACGAGAAAAAT 950
|||||||||||||| |||||||| |||||||||||||| || ||||||||||| ||||
Sbjct 889 GACGCTAACTCAAGCGGTGGTGGCGATGACGATGATGA---CAGAGAGGACGAGAGAAAT 945
Query 951 G-------A--C-A--GTTGTGGTGGTGGCTCGGCTCTTGCTTGCACCCGTGTGGTTAAT 998
| | | | ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 946 GGCGGTGGAGACGACAGTTGTGGGGGTGGCTCGGCTCTTGCTTGCACCCGTGTGGTTAAT 1005
Query 999 GCTAGTTCTTCAGGGTTAGAGACTAGTCACTTACCACCGGAGATAAGTTCCCCGGCTGTT 1058
| || ||||||||||||||||| |||||||||||| |||||||||||||| ||||| |||
Sbjct 1006 GTTAATTCTTCAGGGTTAGAGAGTAGTCACTTACCGCCGGAGATAAGTTCGCCGGCGGTT 1065
Query 1059 TTCCGGTGTATGAGAGTCAGCTCAATCGACGATGAAGACGAAGAGTATGCTTATCAAACG 1118
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1066 TTCCGGTGTATGAGAGTCAGCTCAATCGACGATGAAGAAGAAGAGTATGCTTATCAAACG 1125
Query 1119 GCTGTTAGCATTGGAGGACACGTGTTCAAAGGCATTCTCTACGACCAAGGTCCATCGTCA 1178
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1126 GCTGTGAGCATTGGAGGACACGTGTTCAAAGGCATTCTCTACGACCAAGGTCCATC---A 1182
Query 1179 GATCACCACCGTTACAGCTCAAGCCTCAATGGCGAAACCTCTCATCAACACCATCTTAAC 1238
||||||||||| |||||||||||| |||| | |||||||||||| | ||||||||||||
Sbjct 1183 GATCACCACCGATACAGCTCAAGCGTCAACGCCGAAACCTCTCA--A-CACCATCTTAAC 1239
Query 1239 CTCATGGACTCAACT-CCTTCAGCCGCAACTACAAACGCCGTGACCGCCGTTAACACTAA 1297
|||||||| ||||| ||| |||||| ||||||| |||||||||||||||||| | |||
Sbjct 1240 CTCATGGATTCAACCGCCT-CAGCCGTTACTACAACCGCCGTGACCGCCGTTAATAGTAA 1298
Query 1298 CAACGGATCTATTGACCCTTCTTCCCTTTACACTGCGGTGGCAACTCCGTTCAACGCCTT 1357
||||||||| |||||||||||||| |||||||||||||||| ||||||| |||||||
Sbjct 1299 CAACGGATCGATTGACCCTTCTTCAATTTACACTGCGGTGGCGGCTCCGTTTAACGCCTA 1358
Query 1358 TGTCGCCGGTGGTACGC-CTTTCTTTGCATCTTCTAGGTGTTGAGATTA-AAACATCTGA 1415
|||| ||| ||||| | ||||||||||| || |||||| |||| ||| |||||| |||
Sbjct 1359 TGTCACCGCCGGTAC-CTCTTTCTTTGCACCTCCTAGGTCTTGATATTTTAAACATTTGA 1417
Query 1416 AGATGTTAAA-TCTTTTAAATTACGTTTGTGATTAATTATAACTACTCTTATAACTACCA 1474
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 AGATGTTAAAATCTTTAAAATTACGTTTGTGATTAATTATAACTACTCTTATAACTACCA 1477
Query 1475 GAGATC--T--A---TCTACGAGTACGAGAGATAATTTATTTGAGTATTTTTATTGTTGT 1527
|||||| | | |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1478 GAGATCGATCTACCGTCTACGAGTACGAGAGATTATTTATTTGAGTATTTTTATTGTTGT 1537
Query 1528 CGGACAATATGGTGACTGTTC-GT----ACCTAGCTAGGGTTTGTGTACTGATTAACATG 1582
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1538 CGGACAATATGGTGACTGTTCTGTTCGTACCTAGCTAGGGTTTGTGTACTGATTAACATG 1597
Query 1583 CACATCGTACGTTTTAGAGATAAATGAGATATTATCATTAAGttttttttGGGGATAAAC 1642
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1598 CACATCGTACGTTTTAGAGATAAATGAGATATTATGACTAAGTTTTTTTTGGGGATAAAC 1657
Query 1643 GAGATATTAAATTAATGTCAGAGTTTCAAAT 1673
||| |||||||||||||||||||||||||||
Sbjct 1658 GAGCTATTAAATTAATGTCAGAGTTTCAAAT 1688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5