BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19800.2
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472206 jgi|Araly1|472206|fgenesh2_kg.1__2160__AT1G19800.1 1884 0.0
> Ahg472206 jgi|Araly1|472206|fgenesh2_kg.1__2160__AT1G19800.1
Length=1325
Score = 1884 bits (1020), Expect = 0.0
Identities = 1147/1208 (95%), Gaps = 10/1208 (1%)
Strand=Plus/Plus
Query 263 CCACAATGATGCAGACTTGTTGTATCCATCAATCGTTTTGTTTCCCTCATAGAGTCTTTC 322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 116 CCACAATGATGCAGACTTGTTGTATCCATCAATCGTTTTGTTTCCCTCATAGAGTCCTTC 175
Query 323 CACGGTTTGATGCTTCGATTGGTATTAAGCCCCCAAAGCTTTGTCAAGTTGGTTTCATTG 382
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 176 CAAGATTTGATGCTTCGATTGGTATTAAGCCCCCAAAGCTTTGTCAAGTTGGTTTCACTG 235
Query 383 GAAAGACTCAATCTTATGGGATTTCAAGTCCGATACGGCAAAGAAGATTATATGTGAATT 442
|||||||||| |||||||||||||||| || |||||| ||||||||||||||| || |
Sbjct 236 GAAAGACTCAGTCTTATGGGATTTCAAATCTTATACGGGGAAGAAGATTATATGTCAACT 295
Query 443 TGAATGCTAATGATGGTCACCCATCCATGTCTATGTTGGAAGAAGAAACCTCTACTGAAA 502
||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 296 TGAATGCTAATGACGGTCACCCGTCCATGTCTATGTTGGCAGAAGAAACCTCTACTGAAA 355
Query 503 ACAACGCACCCAGTCAAGAAGCCGAGCTTCCGTTCAGCAAATGGTCACCTTCTAAGTACA 562
|| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TCAGCGAACCGAGTCAAGAAGCCGAGCTTCCGTTCAGCAAATGGTCACCTTCTAAGTACA 415
Query 563 TATGGAGAGGTTTATCAGTTCCTATTATAGCAGGACAAGTCGTTCTCCGGATTTTAAAGG 622
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 416 TTTGGAGAGGTTTATCAGTTCCGATTATAGCAGGACAAGTCGTTCTCCGGATTTTAAAGG 475
Query 623 GTAAGATTCACTGGAGAAACACTCTTCAACAGCTGGAGAGAACCGGACCGAAATCTCTAG 682
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 476 GTAAGATCCACTGGAGAAACACTCTTCAACAGCTGGAGAGAACCGGACCGAAATCTCTTG 535
Query 683 GAGTTTGTCTTCTGACTTCTACATTTGTTGGTATGGCTTTCACAATCCAGTTCGTTAGAG 742
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 GAGTTTGTCTTCTGACTTCTACATTTGTTGGTATGGCTTTCACAATCCAGTTCGTTAGAG 595
Query 743 AATTCACTAGACTAGGTCTAAACAGATCCATTGGAGGTGTCTTGGCTTTAGCCTTCTCTA 802
||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||
Sbjct 596 AATTCACTAGACTAGGTCTTAACAGATCCATAGGAGGCGTCTTGGCTTTAGCCTTCTCTA 655
Query 803 GAGAGCTAAGTCCAGTCATCACATCGATTGTTGTTGCTGGACGAATGGGAAGTGCATTTG 862
||||||| |||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 656 GAGAGCTTAGTCCAGTTATCACGTCGATTGTTGTTGCTGGACGAATGGGAAGCGCATTTG 715
Query 863 CAGCTGAACTAGGGACAATGCAAGTCTCAGAGCAAACTGATACACTCCGTGTTTTAGGAG 922
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 CAGCTGAACTAGGGACAATGCAAGTCTCAGAGCAAACTGATACACTCCGTGTTTTAGGAG 775
Query 923 CTGACCCAATTGATTATCTAATCACTCCAAGAGTCATCGCCTCGTGTTTGGC-TCTACCG 981
| || || ||||||||||||||||| ||||||||||||||||||||| |||| | |||||
Sbjct 776 CAGATCCGATTGATTATCTAATCACACCAAGAGTCATCGCCTCGTGTCTGGCAT-TACCG 834
Query 982 TTTCTGACACTCATGTGTTTCACTGTTGGTATGGCTTCAAGCGCTCTGCTCTCTGATGCA 1041
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTTCTGACACTCATGTGTTTCACTGTTGGTATGGCTTCAAGCGCTCTGCTCTCTGATGCA 894
Query 1042 GTTTACGGGATCAGCATTAACATAATCATGGACTCGGCTCACCGAGCACTTAGACCATGG 1101
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 895 GTTTACGGGATCAGCATTAACATTATCATGGACTCGGCTCACCGAGCACTTAGACCATGG 954
Query 1102 GACATTGTGAGTGCCATGATTAAATCTCAAGTCTTTGGAGCTATAATATCGGTAATTAGT 1161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 GACATTGTGAGTGCCATGATTAAATCTCAAGTCTTTGGAGCTATAATATCGGTAATTAGT 1014
Query 1162 TGTTCTTGGGGAGTAACCACTACTGGAGGTGCTAAAGGTGTTGGAGAATCTACAACTTCT 1221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 TGTTCTTGGGGAGTAACCACTACTGGAGGTGCTAAAGGTGTTGGAGAATCTACAACTTCT 1074
Query 1222 GCTGTCGTCATGTCTCTTGTCGGAATCTTCATCGCGGACTTTGTGCTTTCTTCCTTCTTC 1281
|| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1075 GCAGTTGTCATGTCTCTTGTCGGAATCTTTATCGCGGATTTTGTGCTTTCTTCCTTCTTC 1134
Query 1282 TTTCAAGGTGCTGGAGATTCTTTGAAGAACTGTGTTTGACATATTATT-TTCT--GTCTT 1338
||||| |||||||||||||||||||||||||||||||||||||||||| || | |||||
Sbjct 1135 TTTCAGGGTGCTGGAGATTCTTTGAAGAACTGTGTTTGACATATTATTATTTTTTGTCTT 1194
Query 1339 CTTTTGTTGTGGTTTAGATGGGTTTATGTAAATCAGTTGTCTTAAATTG---AGAAA-GT 1394
||| |||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 1195 CTTATGTTGTGGTTTAGATGGGTTTATGTAAATCAGTTGTCTTAAATTTTTTAAAAAAGG 1254
Query 1395 AACATCATTTTAGAAAGAACAGAAAGATTGCTATATTTCTATTCCAATAATGATACACAT 1454
||||||||||| ||||||||| ||||||||||||||||||||||| ||| |||||||| |
Sbjct 1255 AACATCATTTTGGAAAGAACATAAAGATTGCTATATTTCTATTCCGATA-TGATACACGT 1313
Query 1455 TGAATAAT 1462
| ||||||
Sbjct 1314 TTAATAAT 1321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54697591820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5