BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19810.1
Length=1607
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920931 jgi|Araly1|920931|scaffold_102212.1 307 1e-82
Ahg906882 jgi|Araly1|906882|Al_scaffold_0003_4010 272 5e-72
> Ahg920931 jgi|Araly1|920931|scaffold_102212.1
Length=280
Score = 307 bits (166), Expect = 1e-82
Identities = 214/236 (91%), Gaps = 8/236 (3%)
Strand=Plus/Plus
Query 1250 CAAAACGTGGGTCAGGAGAAGGTGCTTGGGTTGTTGAA-AGACCATTGACTCAGTTGCTC 1308
|||||||||| || ||||||||||||||| |||||| || |||||| ||||||||||
Sbjct 43 CAAAACGTGGATC---AGAAGGTGCTTGGGTAGTTGAACGGA-CATTGATTCAGTTGCTC 98
Query 1309 AATG-AA--ATGAGCGGTGGAAAAGAACGAGATGGAGTGTTTGTGATTGGTGCAACGAAT 1365
|||| || ||||||||||||||| ||||| |||| ||||||||||||||||||||||||
Sbjct 99 AATGAAATGATGAGCGGTGGAAAAAAACGAAATGGTGTGTTTGTGATTGGTGCAACGAAT 158
Query 1366 AGACCGGAGATGATGGATCCTGCGATTACAAGACCAGGGAGGTTTGGGAAACATATCTAT 1425
|||||||| | |||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 159 AGACCGGACACGATGTATCCTGCGATTACAAGACCAGGGAGGTTTGGGAAACATCTCTAT 218
Query 1426 ATACCTCTTCCAAACTCTGTTCAACGAGGTTTGATTCTGAAATCTCTTGCGAGGAA 1481
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 219 GTACCTCTTCCAAACTCTGTTCAACGAGGTTTGATTCTGTAATATCTTGCGAGGAA 274
> Ahg906882 jgi|Araly1|906882|Al_scaffold_0003_4010
Length=2157
Score = 272 bits (147), Expect = 5e-72
Identities = 266/321 (83%), Gaps = 17/321 (5%)
Strand=Plus/Plus
Query 129 GAAGCCAATTTCTGGGATTTTACTTCATGGTCCACCTGGTTGTGGCAAGTCTACATTGGC 188
||| || ||||||||| |||||||||||||||||||||||||||||||||||||| | ||
Sbjct 534 GAAACCTATTTCTGGGTTTTTACTTCATGGTCCACCTGGTTGTGGCAAGTCTACACTAGC 593
Query 189 TCGTGCATGCCATTGCTAATGAAACTGGTGTTCC-TTTTCATATGATCTCTGCTTCTGAG 247
| || |||||| || || |||||||| || || |||| ||||||| || ||| ||||
Sbjct 594 T--TG--TGCCATCGCCAACGAAACTGGCGTGCCCTTTT-ATATGATTTCCGCTGCTGAA 648
Query 248 GTTG-TTTCTGGTGTTTCGGGTGAATCTGAAGAGAATATAAGAAAACTCTTCTCTAAAGC 306
||| ||||||||||||| |||||||||||||||||||| || ||||||||| ||||||
Sbjct 649 -TTGGTTTCTGGTGTTTCCGGTGAATCTGAAGAGAATATCAGGGAACTCTTCTTTAAAGC 707
Query 307 GTATAGAACTGCTCCTTCGATTATCTTTATCGATGAGATTGAGGCGATTGCGTCAAAGAG 366
||||| ||||| || || ||||| ||||| ||||||||||| || ||||| ||||||||
Sbjct 708 TTATAGGACTGCACCCTCCATTATATTTATTGATGAGATTGACGCAATTGCATCAAAGAG 767
Query 367 GGATAATCATCAGCAAAAGGGTATGGAGACTCGTATTGTT-ACACAGTTGA-TGAATTGT 424
||| ||||| ||| ||| || |||||| || ||||| || || ||||| | ||| ||||
Sbjct 768 GGAGAATCAGCAG-AAA-GG-TATGGATACACGTATC-TTGACTCAGTT-ACTGAGTTGT 822
Query 425 ATGGACCAAGA-GTATATGCT 444
||||| | || |||||||||
Sbjct 823 ATGGATGA-GAAGTATATGCT 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60220677345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5