BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19830.1
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg472207 jgi|Araly1|472207|fgenesh2_kg.1__2161__AT1G19830.1 774 0.0
> Ahg472207 jgi|Araly1|472207|fgenesh2_kg.1__2161__AT1G19830.1
Length=688
Score = 774 bits (419), Expect = 0.0
Identities = 521/566 (92%), Gaps = 23/566 (4%)
Strand=Plus/Plus
Query 5 TCTCCTCACTCCTCTAGCAAACCACAACAAAAACATAGAAGATAACAAAGAAAACCCCAT 64
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 3 TCTCCTCACTCCTATAGCAAACCACAACAAAAACATAAAAGATAACAAAGAAAACCCCAT 62
Query 65 TT--C-C-CAAGGGAATGGCGATTATAAACCGGAGCAAGCTGACACAAACGACTATGATA 120
|| | | ||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 63 TTCACTCTCAAAGGAATGGCGATTATAAACCGGAGCAAGCTGACCCAAACGACTATGATA 122
Query 121 AAGCAAATCTTGAAGAGGTGTTCAAGTTTGGGAAAGAAACAGAGCAGTGAGTATAACGAT 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 123 AAGCAAATCTTGAAGAGGTGTTCAAGTTTGGGAAAGAAACAGAGCAGTGAGTATAACGAC 182
Query 181 -ACACATGAACATGATGGAGACTCTCTTCCTCTGGATGTTCCCAAAGGTCACTTCGTGGT 239
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GA-ACATGAACATGCTGGAGACTCTCTTCCTCTGGATGTTCCCAAAGGTCACTTCGTGGT 241
Query 240 CTACGTAGGAGGGAATCGGGTCAGGTACGTCTTACCCATTTCGTTTTTGACCCGACCCGA 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 242 CTACGTAGGAGGGAATCGGGTCAGGTACGTCTTACCCATTTCGTTTTTGACCCGACCCGA 301
Query 300 GTTTCAGCTTCTTCTACAACAAGCTGAGGAAGAGTTTGGCTTCGATCACAACATGGGTCT 359
||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 302 GTTTCAGCTTCTTTTACAACAAGCTGAGGAAGAGTTTGGCTTCGAGCACAACATGGGTCT 361
Query 360 CACTATCCCTTGTGAGGAAGTAGCTTTCAAATCTCTCATCACCTCTATGCTTCAG-CCAA 418
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 362 CACTATCCCTTGTGAGGAAGTAGCTTTCAAATCTCTCATCACCTCTATGCTTCAATCCA- 420
Query 419 CATATATTTAGT--G--TTTT-ATTCTTGAG---G-ATAAAGATCTGTTTT-AGGTAGCC 468
|||||||||| | | |||| ||| || | | ||||||||||||||| | ||||
Sbjct 421 CATATATTTAATTAGGGTTTTTATTTTTAATTAAGCATAAAGATCTGTTTTTAATTAGCT 480
Query 469 TT-TAAAA-TTTTAGGTGATTTTGGGGTACAATGGGGGTAAGTGTTTCTA-TTAGAACGA 525
|| ||||| |||| ||||||||||||||||||| ||| ||| |||||||| |||||||||
Sbjct 481 TTCTAAAAATTTT-GGTGATTTTGGGGTACAATAGGG-TAAATGTTTCTAATTAGAACGA 538
Query 526 GACTAACTCTAGAGATGCCTCTAAGA 551
||| |||| ||||||| |||| ||||
Sbjct 539 GACCAACTTTAGAGATACCTCCAAGA 564
Score = 207 bits (112), Expect = 7e-53
Identities = 122/127 (96%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 590 AGATTTGTAGGGAGGAAAATAAGCAAATACTCTGATAATTTTTCTCGTTGTGGTGGTGTG 649
|||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 562 AGATTTGTAGGGGGGAAAATAAGCAGATACTCTGATAATTTTTCTCGTTGTGGTAGTGTG 621
Query 650 ATTATCTGTACAACCCATTGAGGGACTATTATATAATATCAGTGATGAATGCTATTTTTC 709
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 622 ATTATCTGTACAACCCAGTGATGGACTATTATATAATATCAGTGATGAATGCTATTTTTC 681
Query 710 TTCTTAT 716
|||||||
Sbjct 682 TTCTTAT 688
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26419181481
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5