BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19835.1
Length=3444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg335233 jgi|Araly1|335233|fgenesh1_pg.C_scaffold_1001798 4499 0.0
> Ahg335233 jgi|Araly1|335233|fgenesh1_pg.C_scaffold_1001798
Length=2961
Score = 4499 bits (2436), Expect = 0.0
Identities = 2794/2967 (94%), Gaps = 24/2967 (1%)
Strand=Plus/Plus
Query 236 ATGGATCGTAAGAGTTGGCCATGGAAGAAGAAATCCTCTGAGAAAACAGCTACTGTCACA 295
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1 ATGGATCGTAAGAGTTGGCCATGGAAGAAGAAATCCTCTGAGAAAGCAGCTACTGTGACA 60
Query 296 GAAGTTGTTGATCAGGAAAATGGGAAGAAGCCGAGTTATATCCAGATCTCATTTGATCAA 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGTTGTTGATCAGGAAAATGGGAAGAAGCCGAGTTATATCCAGATCTCATTTGATCAA 120
Query 356 TACACGAATCTAAATGGTTTAAAAGATGAAGTCAAGAGCTACGAAGAAAAAGTTACAAAG 415
|||||||||||||||||||||||||||||||| |||| ||| |||||||||||| ||||
Sbjct 121 TACACGAATCTAAATGGTTTAAAAGATGAAGTTAAGAACTATGAAGAAAAAGTTGTAAAG 180
Query 416 CTTGAGGATCAGATCAAAGATTTGGATTTGAAGCTATCAACAGCTAATGCAGATATTGTA 475
||||| ||||||||||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 181 CTTGAAGATCAGATCAAGGATTTGGATTTGAAGCTATCTACAGCAAATGCAGATATTGTA 240
Query 476 GC-AAAGGAGGTTTTAGTCAAACAACACTCCAAAGTTGCTGAAGAAGCTGTCACAGGTTG 534
|| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 GCCAAAG-AGGTTTTAGTCAAACAACATTCCAAAGTTGCTGAAGAAGCTGTCACAGGTTG 299
Query 535 GGAAAAAGCTGAAGCAGAAGCATCAGCTTTGAAAACACATCTCGAAACCATTACTCTCGC 594
|||||||||||||||||| ||||| ||||||||||||||||| |||||| |||| |||||
Sbjct 300 GGAAAAAGCTGAAGCAGAGGCATCGGCTTTGAAAACACATCTTGAAACCGTTACACTCGC 359
Query 595 AAAGCTCACTGTCGAAGATCGAGCAGCGCATTTAGATGGAGCGTTAAAGGAGTGTATGAG 654
||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 360 GAAGCTCACTGTTGAAGATCGAGCAGCGCATTTAGATGGCGCGCTAAAGGAGTGTATGAG 419
Query 655 ACAAATAAGGAGTTTAAAGGAAGAGAATGAACAGAAGCTGCATGATGTTATCGCTACTAA 714
|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 420 GCAGATAAGGAGTTTAAAGGAAGAGAATGAACAAAAGCTGCATGATGTTATTGCTACTAA 479
Query 715 AACCAACCAAATGGACAATCTTAGAGCTGAGTTTGAGTCTAGGATTGGGGAATACGAGGA 774
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 480 AACCAACCAAATGGATAATCTTAGAGCTGAGTTTGAGTCTAGGATTGGCGAATACGAGGA 539
Query 775 AGAACTGCTTCGGTGTGGTGCTGAGAATGACGCGCTTTCGAGATCGTTGCAAGAGAGGTC 834
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 540 AGAACTTCTTCGGTGTGGAGCTGAGAATGACGCGCTTTCGAGATCGTTGCAAGAGCGGTC 599
Query 835 TAACATGCTAATGAGGATAAGTGAGGAGAAGTCTCAAGCAGAGTCTGAGATTGAGCATCT 894
|||||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 600 AAACATGCTTATGAGAATAAGTGAAGAGAAATCTCAAGCAGAGTCTGAGATTGAGCATCT 659
Query 895 TAAGAACAATATAGAGTCTTGTGAAAGGGAGATAAATACTCTCAAGTATGAAACTCATGT 954
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 660 TAAGAACAATATAGAGTCTTGTGAAAGGGAGATTAATACTCTCAAGTATGAAACTCATGT 719
Query 955 GATTACCAAAGAGTTGGAGATCCGTAACGAGGAAAAGAATATGAGTATGAGATCTGCGGA 1014
|||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||
Sbjct 720 GATTACCAAAGAGTTGGAAATCCGTAACGAGGAAAAGAATATGAGCATGAGATCCGCGGA 779
Query 1015 AGCGGCGAATAAGCAGCATTTGGAAGGTGTCAAGAAGATTGCAAAGTTGGAAGCTGAGTG 1074
||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGCCGCAAACAAGCAGCATTTGGAAGGTGTCAAGAAGATTGCAAAGTTGGAAGCTGAGTG 839
Query 1075 TCAAAGATTACGAACTCTTGTGAGAAAGAAACTTCCTGGTCCTGCAGCACTTGCACAGAT 1134
|||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||
Sbjct 840 TCAAAGATTACGTACTCTGGTGAGAAAGAAACTTCCGGGTCCTGCAGCACTTGCACAGAT 899
Query 1135 GAAAATGGAGGTTGAGAGTTTAGGATTTGGAGATCATCGTCAAGATCATCGACAAAGAAG 1194
|||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 900 GAAAATGGAGGTTGAGAGTTTAGGATATGGAGATCATCGACAAGATCATCGACAAAGGAG 959
Query 1195 GTCACCGGTTAGACCATCTAGTCCTCTTATGTCTCCAATGTCACACATGTCTCAGGTTTC 1254
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GTCACCGGTCAGACCATCTAGTCCTCTTATGTCTCCAATGTCACACATGTCTCAGGTTTC 1019
Query 1255 TGAGTTCTCACTTGACAATATGCAAAAGTTCCATAAAGAAAACGATTTGCTTACTGAGAG 1314
||||| || |||||||||||||| ||||||||||||||||| ||||||||||| ||| |
Sbjct 1020 CGAGTTTTCGCTTGACAATATGCAGAAGTTCCATAAAGAAAATGATTTGCTTACAGAGCG 1079
Query 1315 GCTACTTG-CTATGGAAGAAGAAACAAAGATGCTTAAAGAAGCTTTGGCTAAGCGTAACA 1373
| |||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 1080 GTTACT-GACTATGGAAGAAGAAACAAAGATGCTGAAAGAAGCTTTGGCGAAGCGTAACA 1138
Query 1374 GCGAGCTTCAAGTGTCGAGAAATCTCTGTGCTAAGACAGCTAATAGGCTACAAACCTTGG 1433
|||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct 1139 GCGAGCTTCAAGTGTCGAGAAACCTCTGTGCTAAGACAGCTAACAGGCTTCAAACCTTGG 1198
Query 1434 AAGCTCAAATGATGAGTAAAAGTCCAACCAAGA-GAGGTTTTGAAATGCCAGCTGAAATC 1492
||||||||||||||| |||||||||||| || | | || |||||||||||||||||||||
Sbjct 1199 AAGCTCAAATGATGAATAAAAGTCCAACGAA-ACGCGGCTTTGAAATGCCAGCTGAAATC 1257
Query 1493 TTTTCTCGTCAAAATGCTAGTAATCCTCCTAGTATGGCTTCAATGTCTGAGGATGGAAAC 1552
|| ||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1258 TTCTCTCGTCAAAATGGTAGTAATTCTCCTAGTATGGCTTCAATGTCTGAGGACGGAAAC 1317
Query 1553 GAAGATGCTAGAAGCGTTGCTGGCTCTTTGATGTCTGAACTCTCTCAATCTAACAAGGAT 1612
||||||||||||||||| || ||||||||||||||||||||||||||||| |||||||||
Sbjct 1318 GAAGATGCTAGAAGCGTCGCAGGCTCTTTGATGTCTGAACTCTCTCAATCCAACAAGGAT 1377
Query 1613 AAAGCCAACGCGAAGATCAAGAAGACCGAGAGTGCTAACCAGTTGGAGCTGATGGATGAT 1672
||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1378 AAAAACAATGCGAAGATCAAGAAGACCGAGAGTGCTAACCAGTTGGAGCTTATGGATGAC 1437
Query 1673 TTTCTTGAAATGGAAAAGCTAGCTTGTCTACCAAATGGCTCAAACGCAAATGGTTCGACG 1732
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
Sbjct 1438 TTTCTTGAAATGGAAAAGCTAGCTTGTCTACCAAATGGCTCAAATGCAAATGGTACGAAG 1497
Query 1733 GATCACTCAAGTGCTGATTCCGATGCTGAGATTCCACCAGCGACTCAACTGAAGAAAAGA 1792
|||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||
Sbjct 1498 AATCACTCAAGTGCTGATTCCGATGGTGAGATTCTACCAGCGACGCAACTGAAGAAAAGA 1557
Query 1793 ATCTCCAATGTGCTTCAGTCTCTCCCTAAAGATGCTGCATTTGAGAAGATTTTGGCAGAG 1852
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1558 ATCTCCAATGTGCTTCAGTCTCTCCCCAAAGATGCTGCATTTGAGAAGATTTTGGCAGAG 1617
Query 1853 ATACAATGTGCAGTTAAAGATGCAGGTGTTAAGCTGCCTTCTAAGAGTCATGGAGCTAAT 1912
||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||
Sbjct 1618 ATACAATGTGCAGTTAAAGATGCAGGTGTTAAGCTACCTTCCAAGTGTCATGGAGCTAAT 1677
Query 1913 TTGAACGGTCTTACAGAAGAAAAGGTGATAGCCATGTCAAATGAGACTACAGAGGAAAAA 1972
||||||||| ||||||||||||||| |||||| |||||||||||||| ||||||||||||
Sbjct 1678 TTGAACGGTGTTACAGAAGAAAAGGAGATAGCAATGTCAAATGAGACCACAGAGGAAAAA 1737
Query 1973 GTTACCATTGTCGAGGTAATAACACAAGAATTGTCTGATGCTCTTTCTCAGATATACCAG 2032
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||
Sbjct 1738 GTTACCATTGTCGAGGTAATAACCCAAGAATTGGCTGATGCTCTTTCTCAGATATATCAG 1797
Query 2033 TTTGTTACCTATCTTTCAAAGGAAGCAACGGCGTGT---------T---CTGAGAACAGA 2080
|||||| ||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 1798 TTTGTTTCCTATCTTTCAAAGGAAGCAACGGCGTGTCAGGACACGTTTTCTGAAAACAGA 1857
Query 2081 ACTTTCTCCCAAAAAGTTCAAGAATTCTCTACCACATTCGAGGGAGTCTTGGGCAAGGAA 2140
||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||
Sbjct 1858 ACTTTCTCCCAAAAAGTTCAAGAATTCTCCGTCACATTCGAGAGAGTCTTGGCCAAGGAG 1917
Query 2141 AAGACATTGGTCGATTTTCTGTTTGATCTTTCGCGAGTTTTAGTCGAAGCTAGTGAGCTA 2200
||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1918 AAGACTTTGGTGGATTTTCTGTTTGATCTTTCGCGAGTTTTAGCCGAAGCTAGTGAACTA 1977
Query 2201 AAGATCGATGTGCTAGGG-T-TCCACACATCCACAGTAGAGATTCACAGCCCGGATTGCA 2258
|||||||||||| | ||| | || ||||||||||| | |||||||||||||| |||||||
Sbjct 1978 AAGATCGATGTGGT-GGGATATC-ACACATCCACATTGGAGATTCACAGCCCAGATTGCA 2035
Query 2259 TTGATAAAGTCGCTCTACCGGAAAACAAAGCACTTCAGAAAGATTCATCAGGTGAACATT 2318
| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 2036 TCGATAAAGTCGCTCTGCCAGAAAACAAAGCACTTCAGAAAGATTCATCAGGTGAACATT 2095
Query 2319 ACCAGAATGGTTGTTCTCAGAGCTCAGATTCTGAGATTCCGGATGATTGCAACGGAACAT 2378
| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 2096 ATCAGAATGGTTGTTCTCAGAGCTCAGATTCCGAGATTCCAGATGATTGCAACGGAACAT 2155
Query 2379 CTGGCTATGAACCAAAGCTTGCAACTTGTAAATTTACAACAGAGGAGTTTGAAGGTTTGA 2438
||||||||||||| ||||||||| || |||| ||| || |||| ||||||||||| ||||
Sbjct 2156 CTGGCTATGAACCCAAGCTTGCAGCTAGTAATTTTTCATCAGAAGAGTTTGAAGGATTGA 2215
Query 2439 AACTCGAGAAAGAAAAAGCAGAGAGCAACCTTGCAAGCTGTGAAGCAGATCTTGAAGCAA 2498
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2216 AACTCGAGAAAGAAAAAGCAGAGACCAACCTTGCAAGCTGTGAAGCAGATCTTGAAGTAA 2275
Query 2499 CTAAGACCAAACTACAAGAAACAGAGAAACTTCTTGCTGAAGTCAAATCAGACTTGGAAT 2558
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 2276 CTAAGACCAAACTACAAGAAACAGAGCAACTTCTTGCTGAAGTAAAATCAGACTTGGAAT 2335
Query 2559 CTGCTCAGAAGTCTAATGGCATGGGC-GAGACTCAACTCAAATGCATGGTGGAATCATAT 2617
|||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 2336 CTGCTCAGAAGTCTAATGGCATGG-CTGAGACTCAGCTCAAATGCATGGTGGAATCATAT 2394
Query 2618 AGATCTCTTGAAACTAGATCATCGGAGCTGGAAATCGAGTTGACTTCTCTTAAAGGCAAG 2677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2395 AGATCTCTTGAAACTAGATCATCGGAGCTGGAAATCGAGTTGACTTCTCTTAAAGGCAAG 2454
Query 2678 ATCGAAAACTTAGAAGATGAGCTTCACGACGAGAAGGAAAATCATCGAGAAGCTTTAGCC 2737
||||||||||||||||| |||||||||| |||||||||||| || |||||| ||||||||
Sbjct 2455 ATCGAAAACTTAGAAGACGAGCTTCACGGCGAGAAGGAAAACCACCGAGAAACTTTAGCC 2514
Query 2738 AAATGCCAAGAACTCGAGGAGCAATTACAAAGGAACAACCAAAACTGCCCGAATTGTTCA 2797
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2515 AAATGCCAAGAACTCGAGGAACAATTACAAAGGAACAACCAAAACTGCCCGAATTGCTCA 2574
Query 2798 GTAATCGAAGATGATCCTAAAAGCAAACAGGACAATGAACTAGCGGCTGCTGCAGAGAAG 2857
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2575 GTAACCGAAGCTGATCCTAAAAGCAAACAGGACAATGAACTAGCGGCTGCTGCAGAGAAG 2634
Query 2858 CTAGCAGAGTGTCAAGAGACTATATTACTTCTCGGGAAGCAACTCAAATCCATGTGTCCT 2917
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2635 CTAGCAGAGTGTCAAGAGACTATATTACTTCTCGGGAAGCAACTCAAATCCATGTGTCCT 2694
Query 2918 CAAACAGAACAGGTTGCTTCTTCTCCAAGCCAAGAACAACAAGCCCTAAACCCTGAAGAA 2977
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 2695 CAAACAGAACAGGTTGCTTCTTCTCCAAGCCAAGAGCAACAAGCCCTAAACACTGAAGAA 2754
Query 2978 GAGGAATACGCAACTTCCACAAATCCTCAAGACAGCAAATTGAGTTCGCCTTCAGACAAG 3037
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2755 GACGAATACGCAACTTCCACAAATCCTCAAGACAACAAATTGAGTTCGCCTTCAGACAAG 2814
Query 3038 GATACACCATCGATGAATACAATGAAATCTCCGGTCGCGTCGAAACATAGACACACGAAG 3097
|||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 2815 GATACACCATCGATGACTACAATGAAATCTCCGGTAGCTTCGAAACATAGACACACGAAG 2874
Query 3098 TCGAACTCGTCATCGTCCTCATCAGGACTTACTCCTGAGAAACACTCTAGAGGATTCAGC 3157
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2875 TCAAACTCGTCATCGTCCTCATCAGGACTTACCCCTGAGAAACACTCTAGAGGATTCAGC 2934
Query 3158 AGGTTCTTCTCCACtaaagcaaagtaa 3184
|||||||||||||||||||||||||||
Sbjct 2935 AGGTTCTTCTCCACTAAAGCAAAGTAA 2961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130042726941
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5