BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G19840.1
Length=462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920937 jgi|Araly1|920937|scaffold_102218.1 743 0.0
Ahg926945 jgi|Araly1|926945|scaffold_202506.1 412 8e-115
> Ahg920937 jgi|Araly1|920937|scaffold_102218.1
Length=506
Score = 743 bits (402), Expect = 0.0
Identities = 442/462 (96%), Gaps = 0/462 (0%)
Strand=Plus/Plus
Query 1 ATGGCCGGAAGTCTTGTAAAATGCAGCAAGATCCGTCACATTGTGAGACTCAGACAAATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 22 ATGGCCGGAAGTCTTGTAAAATGCAGCAAGATCCGTCACATTGTGAGACTCAGACAAATG 81
Query 61 CTCCGGCGATGGCGTAACAAAGCGCGGTTATCTTCGGTCAGCCGTTGTGTACCGTCGGAT 120
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 82 CTCCGGCGATGGCGTAACAAAGCTCGGTTATCTTCGGTCAGCCGCTGTGTACCGTCGGAT 141
Query 121 GTTCCATCTGGACACGTGGCAGTTTGTGTGGGTAGCGGTTGCAGGAGATTTGTGGTGCGT 180
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 142 GTTCCATCTGGACACGTGGCAGTCTGTGTGGGCAGCGGTTGCAGGAGATTTGTGGTGCGT 201
Query 181 GCGTCGTACCTGAACCATCCTATCATAAGCAATCTTCTGGTTCAAGCTGAGGAAGAGTTT 240
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 202 GCGTCGTACCTGAACCATCCGATCATAAGCAATCTTCTGGTTCAAGCTGAAGAAGAGTTC 261
Query 241 GGTTTTGCTAACCAAGGACCGTTGGTTATTCCTTGCGAAGAATCGGTTTTCGAAGAAGCG 300
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 262 GGTTTCGCTAACCAAGGACCGTTGGTTATTCCTTGTGAAGAATCGGTTTTCGAAGAAGCG 321
Query 301 ATCCGGTTTATATCCCGGTCTGATTCTTCTCGGTCTAGCCGGTTTACTTGTCCTGATGAT 360
|| |||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 322 ATTCGGTTTATTTCTCGGTCTGATTCGTCTCGGTCAAGCCGGTTTACTTGTCCTGATGAT 381
Query 361 CTTCAGAAATGTAACGGAGGGATCAAAATCAAAAGCAAGCTAGATCTGATGATTGAATCT 420
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 382 CTTCAGAAATGTAACGGAGGAATCAAAATCAAAAGCAAGCTAGATCTGTTGATTGAATCT 441
Query 421 CGACCGTTGCTTCATGGCGTCGCTGAGAAAGCTATCTGGTGA 462
|| ||||||||||| |||||||| |||||||| |||||||||
Sbjct 442 CGGCCGTTGCTTCACGGCGTCGCCGAGAAAGCCATCTGGTGA 483
> Ahg926945 jgi|Araly1|926945|scaffold_202506.1
Length=506
Score = 412 bits (223), Expect = 8e-115
Identities = 392/472 (83%), Gaps = 17/472 (4%)
Strand=Plus/Plus
Query 1 ATGGCCGGAAGTCTTGTAAAATGCAGCAAGATCCGTCACATTGTGAGACTCAGACAAATG 60
||||| ||| |||| | |||||||||||||||||||||||||||||| || ||||| |||
Sbjct 21 ATGGCTGGAGGTCTCGGAAAATGCAGCAAGATCCGTCACATTGTGAGGCTGAGACAGATG 80
Query 61 CTCCGGCGATGGCG-TAACAAAGCGCGG-T-T-ATCTTCGGTCAGCCGTTGTGTACCGTC 116
|| || || ||||| | | ||||| || | | ||||| |||||||| ||||||||||
Sbjct 81 CTTCGACGGTGGCGCGATC-AAGCGAGGATGTCTTCTTCTTTCAGCCGTCGTGTACCGTC 139
Query 117 GGATGTTCCATCTGGACACGTGGCAG-TTTGTGTGGGTAGCGGTTGCAGGAGATTTGTGG 175
|||||| || || ||||||||||| | | | || || ||| ||||||||||||||||||
Sbjct 140 GGATGTGCCGTCAGGACACGTGGC-GATCTACGTAGGAAGCAGTTGCAGGAGATTTGTGG 198
Query 176 TGCGTGCGTCGTACCTGAACCATCCTATCATAAGCAATCT-TCTGGTTCAAGCTGAGGAA 234
|||| ||| |||| ||||||||||| ||| || | ||||| | |||||||||||||||||
Sbjct 199 TGCGCGCGACGTATCTGAACCATCCAATCCTACGGAATCTGT-TGGTTCAAGCTGAGGAA 257
Query 235 GAGTTTGGTTTTGCTAACCAAGGACCGTTGGTTATTCCTTGCGAAGAATCGGTTTTCGAA 294
||||| ||||| | ||||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 258 GAGTTCGGTTTCGTTAACCAAGGTCCGTTGGTTATCCCTTGTGAAGAATCGGTTTTCGAG 317
Query 295 GAAGCGATCCGGTTTATATCCCGGTCTGATTCTTCTCGGTCTAGCCGGTTTACTTGTCCT 354
||| |||| |||||||| |||||||||||||| ||||||| || ||||||||||||||
Sbjct 318 GAATCGATTCGGTTTATCTCCCGGTCTGATTCGACTCGGTCAAGACGGTTTACTTGTCCC 377
Query 355 GATGATCTTCAGAAATGTAACGG--AGG-GATCAAAATCAAAAGCAAGCTAGATCTGATG 411
|||||| ||||||| | ||| | ||| | | ||||| ||||||| ||||||| |||
Sbjct 378 GATGATTTTCAGAA--G-AACCGCCAGGTGGTGGGAATCAGAAGCAAGATAGATCT-ATG 433
Query 412 -ATTGAATCTCGACCGTTGCTTCATGGCGTCGCTGAGAAAGCTATCTGGTGA 462
|| |||||||||||||| ||||| |||||| |||| ||||| ||||||||
Sbjct 434 GATCGAATCTCGACCGTTACTTCACGGCGTCACTGAAAAAGCCGTCTGGTGA 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 16712147982
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5